Research Output 1969 2020

2019

A Computationally Efficient Model for Predicting Successful Memory Encoding Using Machine-Learning-based EEG Channel Selection

Saboo, K. V., Varatharajah, Y., Berry, B. M., Sperling, M. R., Gorniak, R., Davis, K. A., Jobst, B. C., Gross, R. E., Lega, B., Sheth, S. A., Kahana, M. J., Kucewicz, M. T., Worrell, G. A. & Iyer, R. K., May 16 2019, 9th International IEEE EMBS Conference on Neural Engineering, NER 2019. IEEE Computer Society, p. 323-327 5 p. 8717057. (International IEEE/EMBS Conference on Neural Engineering, NER; vol. 2019-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electroencephalography
Learning systems
Data storage equipment
Electrodes
Set theory

A connected cytoskeleton network generates axonal tension in embryonic: Drosophila

Fan, A., Joy, M. S. H. & Saif, T., Jan 1 2019, In : Lab on a chip. 19, 18, p. 3133-3139 7 p.

Research output: Contribution to journalArticle

Cytoskeleton
Drosophila
Axons
Neurons
Stiffness

A continuing career in biocatalysis: Frances H. Arnold

Fasan, R., Jennifer Kan, S. B. & Zhao, H., Nov 1 2019, In : ACS Catalysis. 9, 11, p. 9775-9788 14 p.

Research output: Contribution to journalArticle

Enzymes
Biocatalysts
Catalysis
Biocatalysis
Ministry of State Security (GDR)
experiment
Running
Walking
Vaccines

Activate capture and digital counting (AC + DC) assay for protein biomarker detection integrated with a self-powered microfluidic cartridge

Che, C., Li, N., Long, K. D., Aguirre, M. Á., Canady, T. D., Huang, Q., Demirci, U. & Cunningham, B. T., Jan 1 2019, In : Lab on a chip. 19, 23, p. 3943-3953 11 p.

Research output: Contribution to journalArticle

Microfluidics
Biomarkers
Antibodies
Assays
Gold

Activation of silent biosynthetic gene clusters using transcription factor decoys

Wang, B., Guo, F., Dong, S. H. & Zhao, H., Feb 1 2019, In : Nature chemical biology. 15, 2, p. 111-114 4 p.

Research output: Contribution to journalArticle

Multigene Family
Transcription Factors
Oxazoles
Peptide Synthases
Polyketide Synthases

Acute aerobic exercise effects on cognitive function in breast cancer survivors: A randomized crossover trial

Salerno, E. A., Rowland, K. M., Kramer, A. F. & McAuley, E., Apr 23 2019, In : BMC Cancer. 19, 1, 371.

Research output: Contribution to journalArticle

Open Access
Cross-Over Studies
Cognition
Survivors
Exercise
Breast Neoplasms

Addressing myths about exercise in hemodialysis patients

Wilund, K. R., Jeong, J. H. & Greenwood, S. A., Jul 1 2019, In : Seminars in Dialysis. 32, 4, p. 297-302 6 p.

Research output: Contribution to journalArticle

Renal Dialysis
Exercise
Dialysis
Resistance Training
Research

Advances in Pulsed Doppler Methods for Peripheral Perfusion Imaging

Insana, M. F., Zhu, Y., Kim, M. W. & Dobrucki, L. W., Oct 2019, 2019 IEEE International Ultrasonics Symposium, IUS 2019. IEEE Computer Society, p. 1164-1168 5 p. 8925694. (IEEE International Ultrasonics Symposium, IUS; vol. 2019-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

echoes
arteries
blood
ischemia
skeletal muscle

Advancing the Fields of Measurement Science with Partnerships and Awards

Sweedler, J. V., Apr 2 2019, In : Analytical chemistry. 91, 7, 1 p.

Research output: Contribution to journalEditorial

A gene cluster for taurine sulfur assimilation in an anaerobic human gut bacterium

Xing, M., Wei, Y., Hua, G., Li, M., Nanjaraj Urs, A. N., Wang, F., Hu, Y., Zhai, W., Liu, Y., Ang, E. L., Zhao, H. & Zhang, Y., Aug 15 2019, In : Biochemical Journal. 476, 15, p. 2271-2279 9 p.

Research output: Contribution to journalArticle

Taurine
Multigene Family
Sulfur
Bacteria
Genes

Aging and Central Auditory Disinhibition: Is It a Reflection of Homeostatic Downregulation or Metabolic Vulnerability?

Ibrahim, B. A. & Llano, D. A., Dec 1 2019, In : Brain Sciences. 9, 12, 351.

Research output: Contribution to journalArticle

Open Access
Down-Regulation
Neurons
Speech Perception
Tinnitus
Brain
Exercise
Kidney

A ground-up approach to estimate the likelihood of business interruption

Nocera, F. & Gardoni, P., Dec 2019, In : International Journal of Disaster Risk Reduction. 41, 101314.

Research output: Contribution to journalArticle

infrastructure
social system
Industry
functionality
Critical infrastructures

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A., Bunikis, I., Pettersson, O. V., Mosbech, M. B., Childers, A. K., Evans, J. D., Mikheyev, A. S., Robertson, H. M., Robinson, G. E. & Webster, M. T., Apr 8 2019, In : BMC genomics. 20, 1, 275.

Research output: Contribution to journalArticle

Open Access
Bees
Chromosomes
Chromosome Mapping
Genome
Genomic Structural Variation

AirwayVR: Virtual reality trainer for endotracheal intubation-design considerations and challenges

Rajeswaran, P., Kesavadas, T., Jani, P. & Kumar, P., Mar 2019, 26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1130-1131 2 p. 8798249. (26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Virtual reality
Availability
Students
Artificial Respiration

AirwayVR: Virtual reality trainer for endotracheal intubation

Rajeswarari, P., Varqhese, J., Kesavadas, T., Kumar, P. & Vozenilek, J., Mar 2019, 26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1345-1346 2 p. 8797998. (26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Virtual reality
Availability
Students
Artificial Respiration

Allosteric Interactions in Human Cytochrome P450 CYP3A4: The Role of Phenylalanine 213

Denisov, I. G., Grinkova, Y. V., Nandigrami, P., Shekhar, M., Tajkhorshid, E. & Sligar, S. G., Mar 12 2019, In : Biochemistry. 58, 10, p. 1411-1422 12 p.

Research output: Contribution to journalArticle

Cytochrome P-450 CYP3A
Phenylalanine
Cytochrome P-450 Enzyme System
Progesterone
Carbamazepine

A load-transfer function for the side resistance of drilled shafts in soft rock

Asem, P. & Gardoni, P., Jan 1 2019, In : Soils and Foundations.

Research output: Contribution to journalArticle

soft rock
transfer function
shaft
Transfer functions
Rocks
Tomography
Bone
Thickness measurement
MATLAB
Seed

Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador

Zurita, M. F., Cárdenas, P. A., Sandoval, M. E., Peña, M. C., Fornasini, M., Flores, N., Monaco, M. H., Berding, K., Donovan, S. M., Kuntz, T., Gilbert, J. A. & Baldeón, M. E., Jan 1 2019, (Accepted/In press) In : Gut Microbes.

Research output: Contribution to journalArticle

Ecuador
Nutritional Status
Case-Control Studies
Ruminococcus
Bacteroides

Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer

Woodburn, E. V., Long, K. D. & Cunningham, B. T., Jan 15 2019, In : IEEE Sensors Journal. 19, 2, p. 508-514 7 p., 8494768.

Research output: Contribution to journalArticle

Smartphones
Spectrometers
Assays
strip
Cameras

An application of the theory of normative social behavior to bystander intervention for sexual assault

Reynolds-Tylus, T., Lukacena, K. M. & Quick, B. L., Aug 18 2019, In : Journal of American College Health. 67, 6, p. 551-559 9 p.

Research output: Contribution to journalArticle

Social Behavior
Students
Lenses

Androgen Mediation—and Antiandrogens Mitigation—of the Epidermal Growth Factor Receptor (EGFR) Inhibitor–Induced Rash: Results From a Pilot Randomized Trial and Small Translational Case Series

Le-Rademacher, J. G., Rowland, K. M., Atherton, P. J., Dakhil, C., Sun, Z., Tan, A., Schmidt, L., Nguyen, P. L., Radecki Breitkopf, C., Pittelkow, M., Tindall, D., Menon, S. & Jatoi, A., Jun 1 2019, In : American Journal of Hospice and Palliative Medicine. 36, 6, p. 519-525 7 p.

Research output: Contribution to journalArticle

Androgen Antagonists
Exanthema
Epidermal Growth Factor Receptor
Androgens
Spironolactone

An efficient gene knock-in strategy using 5′-modified double-stranded DNA donors with short homology arms

Yu, Y., Guo, Y., Tian, Q., Lan, Y., Yeh, H., Zhang, M., Tasan, I., Jain, S. & Zhao, H., Dec 23 2019, (Accepted/In press) In : Nature chemical biology.

Research output: Contribution to journalArticle

Gene Knock-In Techniques
Ribonucleoproteins
Neoplastic Stem Cells
HEK293 Cells
DNA

A network of phosphatidylinositol 4,5-bisphosphate binding sites regulates gating of the Ca2+-activated Cl channel ANO1 (TMEM16A)

Yu, K., Jiang, T., Cui, Y. Y., Tajkhorshid, E. & Criss Hartzell, H., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 40, p. 19952-19962 11 p.

Research output: Contribution to journalArticle

Open Access
Molecular Dynamics Simulation
Phosphatidylinositols
Binding Sites
Mutagenesis
Fluids and Secretions

A new implementation for online calculation of manipulator Jacobian

Chembrammel, P. & Kesavadas, T., Feb 2019, In : PloS one. 14, 2, e0212018.

Research output: Contribution to journalArticle

Open Access
robots
Manipulators
Robots
Differentiation (calculus)
Derivatives
Multiresolution analysis
ground motion
wavelet
earthquakes
Earthquakes

An Exploratory Look at the Role of Childcare Providers as a Support and Resource for Breastfeeding Mothers

Lundquist, A., McBride, B. A., Donovan, S. M. & Kieffer, A., Jun 2019, In : Breastfeeding Medicine. 14, 5, p. 313-319 7 p.

Research output: Contribution to journalArticle

Breast Feeding
Mothers
Education
Foster Home Care
Mental Competency

An extended bacterial reductive pyrimidine degradation pathway that enables nitrogen release from β-alanine

Yin, J., Wei, Y., Liu, D., Hu, Y., Lu, Q., Lui Ang, E., Zhao, H. & Zhang, Y., Jan 1 2019, In : Journal of Biological Chemistry. 294, 43, p. 15662-15671 10 p.

Research output: Contribution to journalArticle

Alanine
Nitrogen
Degradation
Bacteria
Uracil

An Internal Replication Examining the Role of Issue Involvement, Relevance, and Additional Requirements to Maintain an Established Freedom among Older Adults

Al-Ghaithi, S. H., Reynolds-Tylus, T. R., Quick, B. L., Gonzalez, A. M. & Nead, K. E., Oct 1 2019, In : Human Communication Research. 45, 4, p. 450-473 24 p.

Research output: Contribution to journalArticle

Health insurance
reactance
Psychological Theory
Costs
threat

An introduction to Exercise and Physical Activity in Dialysis Patients: Preventing the unacceptable journey to physical dysfunction

Bennett, P. N., Thompson, S. & Wilund, K., Jul 1 2019, In : Seminars in Dialysis. 32, 4, p. 281-282 2 p.

Research output: Contribution to journalEditorial

Dialysis
Exercise

A Novel Framework for 3D-2D Vertebra Matching

Yu, H., Fu, Y., Yu, H., Wei, Y., Wang, X., Jiao, J., Bramlet, M., Kesavadas, T., Shi, H., Wang, Z., Wen, B. & Huang, T., Apr 22 2019, Proceedings - 2nd International Conference on Multimedia Information Processing and Retrieval, MIPR 2019. Institute of Electrical and Electronics Engineers Inc., p. 121-126 6 p. 8695312. (Proceedings - 2nd International Conference on Multimedia Information Processing and Retrieval, MIPR 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image matching
Surgery
X rays
Radiotherapy
Detectors

A novel technique for in situ uniaxial tests of self-assembled soft biomaterials

Elhebeary, M., Emon, M. A. B., Aydin, O. & Saif, M. T. A., Jan 1 2019, In : Lab on a chip. 19, 7, p. 1153-1161 9 p.

Research output: Contribution to journalArticle

Biocompatible Materials
Biomaterials
Tissue
Collagen
Electric Stimulation

A pathway for isethionate dissimilation in Bacillus krulwichiae

Tong, Y., Wei, Y., Hu, Y., Ang, E. L., Zhao, H. & Zhang, Y., Jan 1 2019, In : Applied and environmental microbiology. 85, 15, e00793-19.

Research output: Contribution to journalArticle

Bacillus (bacteria)
Bacillus
Bacteria
bacterium
bacteria

A Qualitative Examination of African Americans’ Organ Donation-Related Medical Mistrust Beliefs

Williamson, L. D., Bigman, C. A. & Quick, B. L., Oct 20 2019, In : Howard Journal of Communications. 30, 5, p. 430-445 16 p.

Research output: Contribution to journalArticle

organ donation
examination
Transplants
organ transplant
Health

Architecture-Controlled Ring-Opening Polymerization for Dynamic Covalent Poly(disulfide)s

Liu, Y., Jia, Y., Wu, Q. & Moore, J. S., Jan 1 2019, In : Journal of the American Chemical Society. 141, 43, p. 17075-17080 6 p.

Research output: Contribution to journalArticle

Ring opening polymerization
polymerization
Polymerization
Disulfides
Polymers

A rotifer-derived paralytic compound prevents transmission of schistosomiasis to a mammalian host

Gao, J., Yang, N., Lewis, F. A., Yau, P., Collins, J. J., Sweedler, J. V. & Newmark, P. A., Oct 17 2019, In : PLoS biology. 17, 10, e3000485.

Research output: Contribution to journalArticle

Open Access
schistosomiasis
Schistosoma
Schistosomiasis
Rotifera
Cercaria

ASAP: Accelerated Short-Read Alignment on Programmable Hardware

Banerjee, S. S., El-Hadedy, M., Lim, J. B., Kalbarczyk, Z. T., Chen, D., Lumetta, S. S. & Iyer, R. K., Mar 1 2019, In : IEEE Transactions on Computers. 68, 3, p. 331-346 16 p., 8490591.

Research output: Contribution to journalArticle

Alignment
Edit Distance
Hardware
kernel
Field Programmable Gate Array

A small-molecule competitive inhibitor of phosphatidic acid binding by the AAA+ protein NSF/Sec18 blocks the SNARE-priming stage of vacuole fusion

Sparks, R. P., Arango, A. S., Starr, M. L., Aboff, Z. L., Hurst, L. R., Rivera-Kohr, D. A., Zhang, C., Harnden, K. A., Jenkins, J. L., Guida, W. C., Tajkhorshid, E. & Fratti, R. A., Jan 1 2019, In : Journal of Biological Chemistry. 294, 46, p. 17168-17185 18 p.

Research output: Contribution to journalReview article

Open Access
N-Ethylmaleimide-Sensitive Proteins
SNARE Proteins
Phosphatidic Acids
Vacuoles
Carrier Proteins

A speculative feminist approach to design project management

Radzikowska, M., Roberts-Smith, J., Zhou, X. & Ruecker, S., Jan 1 2019, In : Strategic Design Research Journal. 12, 1, p. 94-113 20 p.

Research output: Contribution to journalArticle

Open Access
Project Management
Project management
Human computer interaction
Software Design
Software design
Open Access
management
interview
best practice
research project
planning data

Assessing the Flexibility of the Prochlorosin 2.8 Scaffold for Bioengineering Applications

Hegemann, J. D., Bobeica, S. C., Walker, M. C., Bothwell, I. R. & van der Donk, W. A., May 17 2019, In : ACS synthetic biology. 8, 5, p. 1204-1214 11 p.

Research output: Contribution to journalArticle

Bioengineering
Scaffolds
Peptides
Epitopes
Cyclization

Association of neurologic deficits with surgical outcomes and health-related quality of life after treatment for metastatic epidural spinal cord compression

for the AOSpine Knowledge Forum Tumor, Dec 1 2019, In : Cancer. 125, 23, p. 4224-4231 8 p.

Research output: Contribution to journalArticle

Spinal Injuries
Spinal Cord Compression
Neurologic Manifestations
Quality of Life
Therapeutics

A subtype of oral, laryngeal, esophageal, and lung, squamous cell carcinoma with high levels of TrkB-T1 neurotrophin receptor mRNA

Zhou, Y., Sinha, S., Schwartz, J. L. & Adami, G. R., Jun 20 2019, In : BMC Cancer. 19, 1, 607.

Research output: Contribution to journalArticle

Open Access
Nerve Growth Factor Receptors
Squamous Cell Carcinoma
Lung
Messenger RNA
Neoplasms

Asymptotic analysis for multi-objective sequential stochastic assignment problems

Yu, G., Jacobson, S. H. & Kiyavash, N., Jan 1 2019, In : Stochastics.

Research output: Contribution to journalArticle

Asymptotic analysis
Assignment Problem
Reward
Asymptotic Analysis
n-dimensional

A tetrahedral molecular cage with a responsive vertex

Pattillo, C. C. & Moore, J. S., Jan 1 2019, In : Chemical Science. 10, 29, p. 7043-7048 6 p.

Research output: Contribution to journalArticle

Open Access
Imines
Alkynes
Self assembly

Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism

Singharoy, A., Maffeo, C., Delgado-Magnero, K. H., Swainsbury, D. J. K., Sener, M., Kleinekathöfer, U., Vant, J. W., Nguyen, J., Hitchcock, A., Isralewitz, B., Teo, I., Chandler, D. E., Stone, J. E., Phillips, J. C., Pogorelov, T. V., Mallus, M. I., Chipot, C., Luthey-Schulten, Z., Tieleman, D. P., Hunter, C. N. & 3 others, Tajkhorshid, E., Aksimentiev, A. & Schulten, K., Nov 14 2019, In : Cell. 179, 5, p. 1098-1111.e23

Research output: Contribution to journalArticle

Chromatophores
Energy conversion
Energy Metabolism
Phenotype
Atoms

A traction force threshold signifies metastatic phenotypic change in multicellular epithelia

Zhang, Y., Shi, X., Zhao, T., Huang, C., Wei, Q., Tang, X., Santy, L. C., Saif, M. T. A. & Zhang, S., Jan 1 2019, In : Soft Matter. 15, 36, p. 7203-7210 8 p.

Research output: Contribution to journalArticle

epithelium
traction
Stiffness
Phase diagrams
thresholds

Author Correction: Building a global alliance of biofoundries (Nature Communications, (2019), 10, 1, (2040), 10.1038/s41467-019-10079-2)

Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., Bell, D. J., Feuvre, R. L., Friedman, D. C., Fu, X., Gold, N. D., Herrgård, M. J., Holowko, M. B., Johnson, J. R., Johnson, R. A., Keasling, J. D., Kitney, R. I., Kondo, A., Liu, C., Martin, V. J. J. & 16 others, Menolascina, F., Ogino, C., Patron, N. J., Pavan, M., Poh, C. L., Pretorius, I. S., Rosser, S. J., Scrutton, N. S., Storch, M., Tekotte, H., Travnik, E., Vickers, C. E., Yew, W. S., Yuan, Y., Zhao, H. & Freemont, P. S., Dec 1 2019, In : Nature communications. 10, 1, 3132.

Research output: Contribution to journalComment/debate

Open Access
foundries
Queensland
Foundries
communication
Genome