Research Output 1975 2020

2020

Adiposity is related to neuroelectric indices of motor response preparation in preadolescent children

Walk, A. M., Raine, L. B., Kramer, A. F., Cohen, N. J., Hillman, C. H. & Khan, N. A., Jan 2020, In : International Journal of Psychophysiology. 147, p. 176-183 8 p.

Research output: Contribution to journalArticle

Adiposity
Contingent Negative Variation
Evoked Potentials
Cognition
Brain

Catalytic Microgelators for Decoupled Control of Gelation Rate and Rigidity of the Biological Gels

Hong, Y. T., Bregante, D. T., Lee, J. C. W., Seo, Y., Kim, D. H., Lee, Y. J., Schook, L. B., Jeon, H., Sung, H. J., Flaherty, D. W., Rogers, S. A. & Kong, H., Jan 10 2020, In : Journal of Controlled Release. 317, p. 166-180 15 p.

Research output: Contribution to journalArticle

Open Access
Thrombin
Gels
Thrombosis
Fibrin
Fibrinogen

Changes in anterior and posterior hippocampus differentially predict item-space, item-time, and item-item memory improvement

Lee, J. K., Fandakova, Y., Johnson, E. G., Cohen, N. J., Bunge, S. A. & Ghetti, S., Feb 2020, In : Developmental Cognitive Neuroscience. 41, 100741.

Research output: Contribution to journalArticle

Open Access
Hippocampus
Head
Child Development
Growth
Research

Characterization of the GH16 and GH17 laminarinases from Vibrio breoganii 1C10

Badur, A. H., Ammar, E. M., Yalamanchili, G., Hehemann, J. H. & Rao, C. V., Jan 1 2020, In : Applied Microbiology and Biotechnology. 104, 1, p. 161-171 11 p.

Research output: Contribution to journalArticle

Cellulases
Vibrio
Bacteria
Microalgae
Weights and Measures

Compact quantum dots for quantitative cytology

Le, P., Chitoor, S., Tu, C., Lim, S. J. & Smith, A. M., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 147-158 12 p. (Methods in Molecular Biology; vol. 2064).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantum Dots
Nanoparticles
Cell Biology
Click Chemistry
Fluorescent Dyes

Computed tomography-guided additive manufacturing of Personalized Absorbable Gastrointestinal Stents for intestinal fistulae and perforations

Fathi, P., Capron, G., Tripathi, I., Misra, S., Ostadhossein, F., Selmic, L., Rowitz, B. & Pan, D., Jan 2020, In : Biomaterials. 228, 119542.

Research output: Contribution to journalArticle

3D printers
Intestinal Perforation
Intestinal Fistula
Stents
Tomography

Emerging molecular biology tools and strategies for engineering natural product biosynthesis

Xu, W., Klumbys, E., Ang, E. L. & Zhao, H., Jun 2020, In : Metabolic Engineering Communications. 10, e00108.

Research output: Contribution to journalReview article

Open Access
Molecular biology
Biosynthesis
Biological Products
Molecular Biology
Enzymes

Extreme-groups designs in studies of dimensional phenomena: Advantages, caveats, and recommendations

Fisher, J. E., Guha, A., Heller, W. & Miller, G. A., Jan 2020, In : Journal of abnormal psychology. 129, 1, p. 14-20 7 p.

Research output: Contribution to journalArticle

National Institute of Mental Health (U.S.)
Economic Inflation
Psychopathology
Research
Patient Selection

Guide to transcranial imaging of sound-evoked activity in the auditory cortex of GCAMP6s mice in vivo

Yudintsev, G., Lee, C. M., Asilador, A. R. & Llano, D. A., Jan 1 2020, Neuromethods. Humana Press Inc., p. 45-68 24 p. (Neuromethods; vol. 152).

Research output: Chapter in Book/Report/Conference proceedingChapter

Auditory Cortex
Acoustic waves
Imaging techniques
Transgenic Mice
Neurological Models

Injection of adeno-associated virus containing optogenetic and chemogenetic probes into the neonatal mouse brain

Huynh, N. C., Ibrahim, B. A., Lee, C. M., Key, M. N. & Llano, D. A., Jan 1 2020, Neuromethods. Humana Press Inc., p. 19-43 25 p. (Neuromethods; vol. 152).

Research output: Chapter in Book/Report/Conference proceedingChapter

Optogenetics
Dependovirus
Viruses
Brain
Injections

Probing cholesterol binding and translocation in P-glycoprotein

Thangapandian, S., Kapoor, K. & Tajkhorshid, E., Jan 1 2020, In : Biochimica et Biophysica Acta - Biomembranes. 1862, 1, 183090.

Research output: Contribution to journalArticle

P-Glycoprotein
Cholesterol
Amino Acids
Binding Sites
Molecular Dynamics Simulation

Should the Environment Be a Human Factor?

Ruecker, S., Grisales, C., Capozzo, J. A., De La Rosa, J. A., Derksen, G., Ferronato, P. B., Sehn, T. C. & Shin, S. S., Jan 1 2020, Advances in Interdisciplinary Practice in Industrial Design - Proceedings of the AHFE International Conference on Interdisciplinary Practice in Industrial Design, 2019. Shin, C. S. (ed.). Springer-Verlag, p. 233-239 7 p. (Advances in Intelligent Systems and Computing; vol. 968).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Human engineering
Physiology
Planets

Spatial relational memory in individuals with traumatic brain injury

Rigon, A., Schwarb, H., Klooster, N., Cohen, N. J. & Duff, M. C., Jan 2 2020, In : Journal of Clinical and Experimental Neuropsychology. 42, 1, p. 14-27 14 p.

Research output: Contribution to journalArticle

Verbal Learning
Aptitude
Memory Disorders
Spatial Memory
Traumatic Brain Injury
Strain energy
Bone
Minerals
Tomography
Trajectories

The generation of enlarged eroded pores upon existing intracortical canals is a major contributor to endocortical trabecularization

Andreasen, C. M., Bakalova, L. P., Brüel, A., Hauge, E. M., Kiil, B. J., Delaisse, J. M., Kersh, M. E., Thomsen, J. S. & Andersen, T. L., Jan 2020, In : Bone. 130, 115127.

Research output: Contribution to journalArticle

Porosity
Bone and Bones
Osteogenesis
Cortical Bone
2019

13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study

Jeon, S., Li, Q., Rubakhin, S. S., Sweedler, J. V., Smith, J. W., Neuringer, M., Kuchan, M. & Erdman, J. W., Jan 2019, In : Nutrition Research. 61, p. 102-108 7 p.

Research output: Contribution to journalArticle

Lutein
Macaca mulatta
Oral Administration
Tissue Distribution
Haplorhini

A 27-band snapshot hyperspectral imaging system for label-free tumor detection during image-guided surgery

Blair, S., Garcia, M., Konopka, C., Dobrucki, W. & Gruev, V., Jan 1 2019, Label-Free Biomedical Imaging and Sensing, LBIS 2019. Hayden, O. & Shaked, N. T. (eds.). SPIE, 108900G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10890).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer-Assisted Surgery
surgery
Imaging systems
Surgery
Labels

A bi-criteria multiple-choice secretary problem

Yu, G., Jacobson, S. H. & Kiyavash, N., Jun 3 2019, In : IISE Transactions. 51, 6, p. 577-588 12 p.

Research output: Contribution to journalArticle

Planning

Accelerating nonconvex learning via replica exchange Langevin diffusion

Chen, Y., Chen, J., Dong, J., Peng, J. & Wang, Z., Jan 1 2019.

Research output: Contribution to conferencePaper

learning
Temperature
divergence
exploitation
regime

A Chalcogen-Bonding Cascade Switch for Planarizable Push–Pull Probes

Macchione, M., Goujon, A., Strakova, K., Humeniuk, H. V., Licari, G., Tajkhorshid, E., Sakai, N. & Matile, S., Oct 28 2019, In : Angewandte Chemie - International Edition. 58, 44, p. 15752-15756 5 p.

Research output: Contribution to journalArticle

Chalcogens
Switches
Supramolecular chemistry
Chemical stability
Molecular dynamics

AcMC 2: Accelerated Markov Chain Monte Carlo for Probabilistic Models

Banerjee, S. S., Kalbarczyk, Z. T. & Iyer, R. K., Apr 4 2019, ASPLOS 2019 - 24th International Conference on Architectural Support for Programming Languages and Operating Systems. Association for Computing Machinery, p. 515-528 14 p. (International Conference on Architectural Support for Programming Languages and Operating Systems - ASPLOS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
Markov processes
Particle accelerators
Program processors
Field programmable gate arrays (FPGA)
Application specific integrated circuits

A Community-Based Participatory Assessment of the Health Status and Obesity Risks in Children From Rural Farmworker Families in the Midwest

Muzaffar, H., Raffaelli, M., Teran-Garcia, M., Wiley, A., Gonzalez, M. & Hannon, B. A., Dec 1 2019, In : Hispanic Health Care International. 17, 4, p. 149-155 7 p.

Research output: Contribution to journalArticle

Health Status
Obesity
Hispanic Americans
Exercise
Needs Assessment

A comparison of glenohumeral joint kinematics and muscle activation during standard and geared manual wheelchair mobility

Slavens, B. A., Jahanian, O., Schnorenberg, A. J. & Hsiao-Wecksler, E. T., Aug 2019, In : Medical Engineering and Physics. 70, p. 1-8 8 p.

Research output: Contribution to journalArticle

Shoulder Joint
Wheelchairs
Biomechanical Phenomena
Muscle
Kinematics

A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data

Dinh, H. V., Suthers, P. F., Chan, S. H. J., Shen, Y., Xiao, T., Deewan, A., Jagtap, S. S., Zhao, H., Rao, C. V., Rabinowitz, J. D. & Maranas, C. D., Dec 2019, In : Metabolic Engineering Communications. 9, e00101.

Research output: Contribution to journalArticle

Open Access
Genomics
Genes
Yeasts
Genome
Basidiomycota

A Computationally Efficient Model for Predicting Successful Memory Encoding Using Machine-Learning-based EEG Channel Selection

Saboo, K. V., Varatharajah, Y., Berry, B. M., Sperling, M. R., Gorniak, R., Davis, K. A., Jobst, B. C., Gross, R. E., Lega, B., Sheth, S. A., Kahana, M. J., Kucewicz, M. T., Worrell, G. A. & Iyer, R. K., May 16 2019, 9th International IEEE EMBS Conference on Neural Engineering, NER 2019. IEEE Computer Society, p. 323-327 5 p. 8717057. (International IEEE/EMBS Conference on Neural Engineering, NER; vol. 2019-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electroencephalography
Learning systems
Data storage equipment
Electrodes
Set theory

A connected cytoskeleton network generates axonal tension in embryonic: Drosophila

Fan, A., Joy, M. S. H. & Saif, T., Jan 1 2019, In : Lab on a chip. 19, 18, p. 3133-3139 7 p.

Research output: Contribution to journalArticle

Cytoskeleton
Drosophila
Axons
Neurons
Stiffness

A continuing career in biocatalysis: Frances H. Arnold

Fasan, R., Jennifer Kan, S. B. & Zhao, H., Nov 1 2019, In : ACS Catalysis. 9, 11, p. 9775-9788 14 p.

Research output: Contribution to journalArticle

Enzymes
Biocatalysts
Catalysis
Biocatalysis
Ministry of State Security (GDR)
experiment
Running
Walking
Vaccines

Activate capture and digital counting (AC + DC) assay for protein biomarker detection integrated with a self-powered microfluidic cartridge

Che, C., Li, N., Long, K. D., Aguirre, M. Á., Canady, T. D., Huang, Q., Demirci, U. & Cunningham, B. T., Jan 1 2019, In : Lab on a chip. 19, 23, p. 3943-3953 11 p.

Research output: Contribution to journalArticle

Microfluidics
Biomarkers
Antibodies
Assays
Gold

Activation of silent biosynthetic gene clusters using transcription factor decoys

Wang, B., Guo, F., Dong, S. H. & Zhao, H., Feb 1 2019, In : Nature chemical biology. 15, 2, p. 111-114 4 p.

Research output: Contribution to journalArticle

Multigene Family
Transcription Factors
Oxazoles
Peptide Synthases
Polyketide Synthases

Acute aerobic exercise effects on cognitive function in breast cancer survivors: A randomized crossover trial

Salerno, E. A., Rowland, K. M., Kramer, A. F. & McAuley, E., Apr 23 2019, In : BMC Cancer. 19, 1, 371.

Research output: Contribution to journalArticle

Open Access
Cross-Over Studies
Cognition
Survivors
Exercise
Breast Neoplasms

Addressing myths about exercise in hemodialysis patients

Wilund, K. R., Jeong, J. H. & Greenwood, S. A., Jul 1 2019, In : Seminars in Dialysis. 32, 4, p. 297-302 6 p.

Research output: Contribution to journalArticle

Renal Dialysis
Exercise
Dialysis
Resistance Training
Research

Advancing the Fields of Measurement Science with Partnerships and Awards

Sweedler, J. V., Apr 2 2019, In : Analytical chemistry. 91, 7, 1 p.

Research output: Contribution to journalEditorial

A gene cluster for taurine sulfur assimilation in an anaerobic human gut bacterium

Xing, M., Wei, Y., Hua, G., Li, M., Nanjaraj Urs, A. N., Wang, F., Hu, Y., Zhai, W., Liu, Y., Ang, E. L., Zhao, H. & Zhang, Y., Aug 15 2019, In : Biochemical Journal. 476, 15, p. 2271-2279 9 p.

Research output: Contribution to journalArticle

Taurine
Multigene Family
Sulfur
Bacteria
Genes

Aging and Central Auditory Disinhibition: Is It a Reflection of Homeostatic Downregulation or Metabolic Vulnerability?

Ibrahim, B. A. & Llano, D. A., Dec 1 2019, In : Brain Sciences. 9, 12, 351.

Research output: Contribution to journalArticle

Open Access
Down-Regulation
Neurons
Speech Perception
Tinnitus
Brain
Exercise
Kidney

A ground-up approach to estimate the likelihood of business interruption

Nocera, F. & Gardoni, P., Dec 2019, In : International Journal of Disaster Risk Reduction. 41, 101314.

Research output: Contribution to journalArticle

infrastructure
social system
Industry
functionality
Critical infrastructures

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A., Bunikis, I., Pettersson, O. V., Mosbech, M. B., Childers, A. K., Evans, J. D., Mikheyev, A. S., Robertson, H. M., Robinson, G. E. & Webster, M. T., Apr 8 2019, In : BMC genomics. 20, 1, 275.

Research output: Contribution to journalArticle

Open Access
Bees
Chromosomes
Chromosome Mapping
Genome
Genomic Structural Variation

AirwayVR: Virtual reality trainer for endotracheal intubation

Rajeswarari, P., Varqhese, J., Kesavadas, T., Kumar, P. & Vozenilek, J., Mar 2019, 26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1345-1346 2 p. 8797998. (26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Virtual reality
Availability
Students
Artificial Respiration

AirwayVR: Virtual reality trainer for endotracheal intubation-design considerations and challenges

Rajeswaran, P., Kesavadas, T., Jani, P. & Kumar, P., Mar 2019, 26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1130-1131 2 p. 8798249. (26th IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Virtual reality
Availability
Students
Artificial Respiration

Allosteric Interactions in Human Cytochrome P450 CYP3A4: The Role of Phenylalanine 213

Denisov, I. G., Grinkova, Y. V., Nandigrami, P., Shekhar, M., Tajkhorshid, E. & Sligar, S. G., Mar 12 2019, In : Biochemistry. 58, 10, p. 1411-1422 12 p.

Research output: Contribution to journalArticle

Cytochrome P-450 CYP3A
Phenylalanine
Cytochrome P-450 Enzyme System
Progesterone
Carbamazepine

A load-transfer function for the side resistance of drilled shafts in soft rock

Asem, P. & Gardoni, P., Jan 1 2019, In : Soils and Foundations.

Research output: Contribution to journalArticle

soft rock
transfer function
shaft
Transfer functions
Rocks
Tomography
Bone
Thickness measurement
MATLAB
Seed

Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador

Zurita, M. F., Cárdenas, P. A., Sandoval, M. E., Peña, M. C., Fornasini, M., Flores, N., Monaco, M. H., Berding, K., Donovan, S. M., Kuntz, T., Gilbert, J. A. & Baldeón, M. E., Jan 1 2019, (Accepted/In press) In : Gut Microbes.

Research output: Contribution to journalArticle

Ecuador
Nutritional Status
Case-Control Studies
Ruminococcus
Bacteroides

Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer

Woodburn, E. V., Long, K. D. & Cunningham, B. T., Jan 15 2019, In : IEEE Sensors Journal. 19, 2, p. 508-514 7 p., 8494768.

Research output: Contribution to journalArticle

Smartphones
Spectrometers
Assays
strip
Cameras

An application of the theory of normative social behavior to bystander intervention for sexual assault

Reynolds-Tylus, T., Lukacena, K. M. & Quick, B. L., Aug 18 2019, In : Journal of American College Health. 67, 6, p. 551-559 9 p.

Research output: Contribution to journalArticle

Social Behavior
Students
Lenses

Androgen Mediation—and Antiandrogens Mitigation—of the Epidermal Growth Factor Receptor (EGFR) Inhibitor–Induced Rash: Results From a Pilot Randomized Trial and Small Translational Case Series

Le-Rademacher, J. G., Rowland, K. M., Atherton, P. J., Dakhil, C., Sun, Z., Tan, A., Schmidt, L., Nguyen, P. L., Radecki Breitkopf, C., Pittelkow, M., Tindall, D., Menon, S. & Jatoi, A., Jun 1 2019, In : American Journal of Hospice and Palliative Medicine. 36, 6, p. 519-525 7 p.

Research output: Contribution to journalArticle

Androgen Antagonists
Exanthema
Epidermal Growth Factor Receptor
Androgens
Spironolactone

An efficient gene knock-in strategy using 5′-modified double-stranded DNA donors with short homology arms

Yu, Y., Guo, Y., Tian, Q., Lan, Y., Yeh, H., Zhang, M., Tasan, I., Jain, S. & Zhao, H., Dec 23 2019, (Accepted/In press) In : Nature chemical biology.

Research output: Contribution to journalArticle

Gene Knock-In Techniques
Ribonucleoproteins
Neoplastic Stem Cells
HEK293 Cells
DNA

A network of phosphatidylinositol 4,5-bisphosphate binding sites regulates gating of the Ca2+-activated Cl channel ANO1 (TMEM16A)

Yu, K., Jiang, T., Cui, Y. Y., Tajkhorshid, E. & Criss Hartzell, H., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 40, p. 19952-19962 11 p.

Research output: Contribution to journalArticle

Open Access
Molecular Dynamics Simulation
Phosphatidylinositols
Binding Sites
Mutagenesis
Fluids and Secretions

A new implementation for online calculation of manipulator Jacobian

Chembrammel, P. & Kesavadas, T., Feb 2019, In : PloS one. 14, 2, e0212018.

Research output: Contribution to journalArticle

Open Access
robots
Manipulators
Robots
Differentiation (calculus)
Derivatives