Research Output

2020

Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy

Misra, C., Bangru, S., Lin, F., Lam, K., Koenig, S. N., Lubbers, E. R., Hedhli, J., Murphy, N. P., Parker, D. J., Dobrucki, L. W., Cooper, T. A., Tajkhorshid, E., Mohler, P. J. & Kalsotra, A., Feb 1 2020, (Accepted/In press) In : Developmental cell.

Research output: Contribution to journalArticle

A Computer Conquers Tactical Combinations

Blair, D. J. & Burke, M. D., Jan 9 2020, In : Chem. 6, 1, p. 12-13 2 p.

Research output: Contribution to journalArticle

Acute PFOA exposure promotes epigenomic alterations in mouse kidney tissues

Rashid, F., Ramakrishnan, A., Fields, C. & Irudayaraj, J., 2020, In : Toxicology Reports. 7, p. 125-132 8 p.

Research output: Contribution to journalArticle

Open Access

Adiposity is related to neuroelectric indices of motor response preparation in preadolescent children

Walk, A. M., Raine, L. B., Kramer, A. F., Cohen, N. J., Hillman, C. H. & Khan, N. A., Jan 2020, In : International Journal of Psychophysiology. 147, p. 176-183 8 p.

Research output: Contribution to journalArticle

A genetic toolbox for metabolic engineering of Issatchenkia orientalis

Cao, M., Fatma, Z., Song, X., Hsieh, P. H., Tran, V. G., Lyon, W. L., Sayadi, M., Shao, Z., Yoshikuni, Y. & Zhao, H., May 2020, In : Metabolic Engineering. 59, p. 87-97 11 p.

Research output: Contribution to journalArticle

Alcohol sensitivity in women after undergoing bariatric surgery: a cross-sectional study

Acevedo, M. B., Teran-garcia, M., Bucholz, K. K., Eagon, J. C., Bartholow, B. D., Burd, N. A., Khan, N., Rowitz, B. & Pepino, M. Y., Jan 1 2020, (Accepted/In press) In : Surgery for Obesity and Related Diseases.

Research output: Contribution to journalArticle

All-digital histopathology by infrared-optical hybrid microscopy

Schnell, M., Mittal, S., Falahkheirkhah, K., Mittal, A., Yeh, K., Kenkel, S., Kajdacsy-Balla, A., Carney, P. S. & Bhargava, R., Feb 18 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 7, p. 3388-3396 9 p., 201912400.

Research output: Contribution to journalArticle

An Activity-Based Sensing Approach for the Detection of Cyclooxygenase-2 in Live Cells

Yadav, A. K., Reinhardt, C. J., Arango, A. S., Huff, H. C., Dong, L., Malkowski, M. G., Das, A., Tajkhorshid, E. & Chan, J., Feb 17 2020, In : Angewandte Chemie - International Edition. 59, 8, p. 3307-3314 8 p.

Research output: Contribution to journalArticle

An in-silico human cell model reveals the influence of spatial organization on RNA splicing

Ghaemi, Z., Peterson, J. R., Gruebele, M. & Luthey-schulten, Z., Mar 25 2020, In : PLoS computational biology. 16, 3, p. e1007717

Research output: Contribution to journalArticle

Open Access

An in vitro mimic of in-cell solvation for protein folding studies

Davis, C. M., Deutsch, J. & Gruebele, M., Jan 1 2020, (Accepted/In press) In : Protein Science.

Research output: Contribution to journalArticle

Anticoagulation and Spine Surgery

Porto, G. B. F., Jeffrey Wessell, D. O., Alvarado, A., Arnold, P. M. & Buchholz, A. L., Jan 1 2020, In : Global Spine Journal. 10, 1_suppl, p. 53S-64S

Research output: Contribution to journalArticle

Open Access

Approximation algorithms for scheduling C-benevolent jobs on weighted machines

Yu, G. & Jacobson, S. H., Apr 2 2020, In : IISE Transactions. 52, 4, p. 432-443 12 p.

Research output: Contribution to journalArticle

Asymptotic analysis for multi-objective sequential stochastic assignment problems

Yu, G., Jacobson, S. H. & Kiyavash, N., Feb 17 2020, In : Stochastics. 92, 2, p. 223-264 42 p.

Research output: Contribution to journalArticle

Bacteroidetes can be a rich source of novel lanthipeptides: The case study of Pedobacter lusitanus

Caetano, T., van der Donk, W. & Mendo, S., May 2020, In : Microbiological Research. 235, 126441.

Research output: Contribution to journalArticle

Band Alignments of Ternary Wurtzite and Zincblende III-Nitrides Investigated by Hybrid Density Functional Theory

Tsai, Y. C. & Bayram, C., Jan 1 2020, (Accepted/In press) In : ACS Omega.

Research output: Contribution to journalArticle

Open Access

Biomedical Imaging and Analysis in the Age of Big Data and Deep Learning

Duncan, J. S., Insana, M. F. & Ayache, N., Jan 2020, In : Proceedings of the IEEE. 108, 1, p. 3-10 8 p., 8944337.

Research output: Contribution to journalArticle

Biosynthetic engineering of the antifungal, anti-MRSA auroramycin

Yeo, W. L., Heng, E., Tan, L. L., Lim, Y. W., Ching, K. C., Tsai, D. J., Jhang, Y. W., Lauderdale, T. L., Shia, K. S., Zhao, H., Ang, E. L., Zhang, M. M., Lim, Y. H. & Wong, F. T., Jan 6 2020, In : Microbial cell factories. 19, 1, 3.

Research output: Contribution to journalArticle

Open Access

Biosystems design by directed evolution

Wang, Y., Yu, X. & Zhao, H., Mar 1 2020, In : AIChE Journal. 66, 3, e16716.

Research output: Contribution to journalReview article

Catalytic Microgelators for Decoupled Control of Gelation Rate and Rigidity of the Biological Gels

Hong, Y. T., Bregante, D. T., Lee, J. C. W., Seo, Y., Kim, D. H., Lee, Y. J., Schook, L. B., Jeon, H., Sung, H. J., Flaherty, D. W., Rogers, S. A. & Kong, H., Jan 10 2020, In : Journal of Controlled Release. 317, p. 166-180 15 p.

Research output: Contribution to journalArticle

Open Access

Changes in anterior and posterior hippocampus differentially predict item-space, item-time, and item-item memory improvement

Lee, J. K., Fandakova, Y., Johnson, E. G., Cohen, N. J., Bunge, S. A. & Ghetti, S., Feb 2020, In : Developmental Cognitive Neuroscience. 41, 100741.

Research output: Contribution to journalArticle

Open Access

Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae

Huo, L., Zhao, X., Acedo, J. Z., Estrada, P., Nair, S. K. & van der Donk, W. A., Jan 15 2020, In : ChemBioChem. 21, 1-2, p. 190-199 10 p.

Research output: Contribution to journalArticle

Characterization of the GH16 and GH17 laminarinases from Vibrio breoganii 1C10

Badur, A. H., Ammar, E. M., Yalamanchili, G., Hehemann, J. H. & Rao, C. V., Jan 1 2020, In : Applied Microbiology and Biotechnology. 104, 1, p. 161-171 11 p.

Research output: Contribution to journalArticle

Chemoselective Tertiary C−H Hydroxylation for Late-Stage Functionalization with Mn(PDP)/Chloroacetic Acid Catalysis

Chambers, R. K., Zhao, J., Delaney, C. P. & White, M. C., Jan 23 2020, In : Advanced Synthesis and Catalysis. 362, 2, p. 417-423 7 p.

Research output: Contribution to journalArticle

Common and specific dimensions of internalizing disorders are characterized by unique patterns of brain activity on a task of emotional cognitive control

Banich, M. T., Smith, L. L., Smolker, H. R., Hankin, B. L., Silton, R. L., Heller, W. & Snyder, H. R., May 2020, In : International Journal of Psychophysiology. 151, p. 80-93 14 p.

Research output: Contribution to journalArticle

Compact quantum dots for quantitative cytology

Le, P., Chitoor, S., Tu, C., Lim, S. J. & Smith, A. M., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 147-158 12 p. (Methods in Molecular Biology; vol. 2064).

Research output: Chapter in Book/Report/Conference proceedingChapter

Comparative effects of N-cadherin protein and peptide fragments on mesenchymal stem cell mechanotransduction and paracrine function

Qin, E. C., Ahmed, S. T., Sehgal, P., Vu, V. H., Kong, H. & Leckband, D. E., May 2020, In : Biomaterials. 239, 119846.

Research output: Contribution to journalArticle

Computational Tools for Discovering and Engineering Natural Product Biosynthetic Pathways

Ren, H., Shi, C. & Zhao, H., Jan 24 2020, In : iScience. 23, 1, 100795.

Research output: Contribution to journalReview article

Open Access

Computed tomography-guided additive manufacturing of Personalized Absorbable Gastrointestinal Stents for intestinal fistulae and perforations

Fathi, P., Capron, G., Tripathi, I., Misra, S., Ostadhossein, F., Selmic, L., Rowitz, B. & Pan, D., Jan 2020, In : Biomaterials. 228, 119542.

Research output: Contribution to journalArticle

Constructing dynamic treatment regimes with shared parameters for censored data

Zhao Ruoqing, Y. Q., Zhu, R., Chen, G. & Zheng, Y., Jan 1 2020, (Accepted/In press) In : Statistics in Medicine.

Research output: Contribution to journalArticle

Cryo-EM structures of a lipid-sensitive pentameric ligand-gated ion channel embedded in a phosphatidylcholine-only bilayer

Kumar, P., Wang, Y., Zhang, Z., Zhao, Z., Cymes, G. D., Tajkhorshid, E. & Grosman, C., Jan 21 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 3, p. 1788-1798 11 p.

Research output: Contribution to journalArticle

Depixelation and enhancement of fiber bundle images by bundle rotation

Renteria, C., Suárez, J., Licudine, A. & Boppart, S. A., Jan 10 2020, In : Applied Optics. 59, 2, p. 536-544 9 p.

Research output: Contribution to journalArticle

Deriving high-spatiotemporal-resolution leaf area index for agroecosystems in the U.S. Corn Belt using Planet Labs CubeSat and STAIR fusion data

Kimm, H., Guan, K., Jiang, C., Peng, B., Gentry, L. F., Wilkin, S. C., Wang, S., Cai, Y., Bernacchi, C. J., Peng, J. & Luo, Y., Mar 15 2020, In : Remote Sensing of Environment. 239, 111615.

Research output: Contribution to journalArticle

Open Access

Differential development of relational memory and pattern separation

Hassevoort, K. M., Khan, N. A., Hillman, C. H. & Cohen, N. J., Mar 1 2020, In : Hippocampus. 30, 3, p. 210-219 10 p.

Research output: Contribution to journalArticle

Differential post-translational amino acid isomerization found among neuropeptides in aplysia californica

Mast, D. H., Checco, J. W. & Sweedler, J. V., Jan 17 2020, In : ACS chemical biology. 15, 1, p. 272-281 10 p.

Research output: Contribution to journalArticle

Duality in balance optimization subset selection

Kwon, H. Y., Sauppe, J. J. & Jacobson, S. H., Jan 1 2020, (Accepted/In press) In : Annals of Operations Research.

Research output: Contribution to journalArticle

Duplication of leucyl-tRNA synthetase in an archaeal extremophile may play a role in adaptation to variable environmental conditions

Weitzel, C. S., Li, L., Zhang, C., Eilts, K. K., Bretz, N. M., Gatten, A. L., Whitaker, R. J. & Martinis, S. A., Feb 26 2020, (Accepted/In press) In : Journal of Biological Chemistry. jbc.RA118.006481.

Research output: Contribution to journalArticle

Dynamic Tracking Algorithm for Time-Varying Neuronal Network Connectivity using Wide-Field Optical Image Video Sequences

Renteria, C., Liu, Y. Z., Chaney, E. J., Barkalifa, R., Sengupta, P. & Boppart, S. A., Dec 1 2020, In : Scientific reports. 10, 1, 2540.

Research output: Contribution to journalArticle

Open Access

Effects of walking speeds and durations on plantar skin blood flow responses

Wu, F. L., Wang, W. T. J., Liao, F., Elliott, J., Jain, S. & Jan, Y. K., Mar 2020, In : Microvascular Research. 128, 103936.

Research output: Contribution to journalArticle

Emerging molecular biology tools and strategies for engineering natural product biosynthesis

Xu, W., Klumbys, E., Ang, E. L. & Zhao, H., Jun 2020, In : Metabolic Engineering Communications. 10, e00108.

Research output: Contribution to journalReview article

Open Access

Endocrine Disruptors in Water and Their Effects on the Reproductive System

Gonsioroski, A., Mourikes, V. E. & Flaws, J. A., Mar 12 2020, In : International journal of molecular sciences. 21, 6, 1929.

Research output: Contribution to journalReview article

Open Access

Epigenetic toxicity of PFOA and GenX in HepG2 cells and their role in lipid metabolism

Wen, Y., Mirji, N. & Irudayaraj, J., Jun 2020, In : Toxicology in Vitro. 65, 104797.

Research output: Contribution to journalArticle

Open Access

Estimation of Backscatter Coefficients Using an in Situ Calibration Source

Nguyen, T. N., Tam, A. J., Do, M. N. & Oelze, M. L., Feb 2020, In : IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control. 67, 2, p. 308-317 10 p., 8851294.

Research output: Contribution to journalArticle

Extreme-groups designs in studies of dimensional phenomena: Advantages, caveats, and recommendations

Fisher, J. E., Guha, A., Heller, W. & Miller, G. A., Jan 2020, In : Journal of abnormal psychology. 129, 1, p. 14-20 7 p.

Research output: Contribution to journalArticle

Force-induced gene up-regulation does not follow the weak power law but depends on H3K9 demethylation

Sun, J., Chen, J., Mohagheghian, E. & Wang, N., Apr 1 2020, In : Science Advances. 6, 14

Research output: Contribution to journalArticle

Open Access

Frontal polymerization of unidirectional carbon-fiber-reinforced composites

Goli, E., Parikh, N. A., Yourdkhani, M., Hibbard, N. G., Moore, J. S., Sottos, N. R. & Geubelle, P. H., Mar 2020, In : Composites Part A: Applied Science and Manufacturing. 130, 105689.

Research output: Contribution to journalArticle

Graphene-based sensing of oxygen transport through pulmonary membranes

Kim, M., Porras-Gomez, M. & Leal, C., Dec 1 2020, In : Nature communications. 11, 1, 1103.

Research output: Contribution to journalArticle

Open Access

Guide to transcranial imaging of sound-evoked activity in the auditory cortex of GCAMP6s mice in vivo

Yudintsev, G., Lee, C. M., Asilador, A. R. & Llano, D. A., Jan 1 2020, Neuromethods. Humana Press Inc., p. 45-68 24 p. (Neuromethods; vol. 152).

Research output: Chapter in Book/Report/Conference proceedingChapter

High-Fidelity Single Molecule Quantification in a Flow Cytometer Using Multiparametric Optical Analysis

Smith, L. D., Liu, Y., Zahid, M. U., Canady, T. D., Wang, L., Kohli, M., Cunningham, B. T. & Smith, A. M., Feb 25 2020, In : ACS Nano. 14, 2, p. 2324-2335 12 p.

Research output: Contribution to journalArticle