Research Output

2020

2-D moving mesh modeling of lithium dryout in open surface liquid metal flow applications

Szott, M. & Ruzic, D. N., May 2020, In : Fusion Engineering and Design. 154, 111512.

Research output: Contribution to journalArticle

Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy

Misra, C., Bangru, S., Lin, F., Lam, K., Koenig, S. N., Lubbers, E. R., Hedhli, J., Murphy, N. P., Parker, D. J., Dobrucki, L. W., Cooper, T. A., Tajkhorshid, E., Mohler, P. J. & Kalsotra, A., Mar 23 2020, In : Developmental cell. 52, 6, p. 748-763.e6

Research output: Contribution to journalArticle

A Comparison of Intradialytic versus Out-of-Clinic Exercise Training Programs for Hemodialysis Patients

Fang, H. Y., Burrows, B. T., King, A. C. & Wilund, K. R., Feb 1 2020, In : Blood Purification. 49, 1-2, p. 151-157 7 p.

Research output: Contribution to journalArticle

A Computer Conquers Tactical Combinations

Blair, D. J. & Burke, M. D., Jan 9 2020, In : Chem. 6, 1, p. 12-13 2 p.

Research output: Contribution to journalArticle

A consensus-based transparency checklist

Aczel, B., Szaszi, B., Sarafoglou, A., Kekecs, Z., Kucharský, Š., Benjamin, D., Chambers, C. D., Fisher, A., Gelman, A., Gernsbacher, M. A., Ioannidis, J. P., Johnson, E., Jonas, K., Kousta, S., Lilienfeld, S. O., Lindsay, D. S., Morey, C. C., Munafò, M., Newell, B. R., Pashler, H. & 47 others, Shanks, D. R., Simons, D. J., Wicherts, J. M., Albarracin, D., Anderson, N. D., Antonakis, J., Arkes, H. R., Back, M. D., Banks, G. C., Beevers, C., Bennett, A. A., Bleidorn, W., Boyer, T. W., Cacciari, C., Carter, A. S., Cesario, J., Clifton, C., Conroy, R. M., Cortese, M., Cosci, F., Cowan, N., Crawford, J., Crone, E. A., Curtin, J., Engle, R., Farrell, S., Fearon, P., Fichman, M., Frankenhuis, W., Freund, A. M., Gaskell, M. G., Giner-Sorolla, R., Green, D. P., Greene, R. L., Harlow, L. L., de la Guardia, F. H., Isaacowitz, D., Kolodner, J., Lieberman, D., Logan, G. D., Mendes, W. B., Moersdorf, L., Nyhan, B., Pollack, J., Sullivan, C., Vazire, S. & Wagenmakers, E. J., Jan 1 2020, In : Nature human behaviour. 4, 1, p. 4-6 3 p.

Research output: Contribution to journalComment/debate

Open Access

A Critical Review of Exercise Training in Hemodialysis Patients: Personalized Activity Prescriptions Are Needed

Wilund, K. R., Viana, J. L. & Perez, L. M., Jan 1 2020, In : Exercise and Sport Sciences Reviews. 48, 1, p. 28-39 12 p.

Research output: Contribution to journalArticle

Acute PFOA exposure promotes epigenomic alterations in mouse kidney tissues

Rashid, F., Ramakrishnan, A., Fields, C. & Irudayaraj, J., 2020, In : Toxicology Reports. 7, p. 125-132 8 p.

Research output: Contribution to journalArticle

Open Access

Additional salt bridges improve the thermostability of 1,4-α-glucan branching enzyme

Ban, X., Wu, J., Kaustubh, B., Lahiri, P., Dhoble, A. S., Gu, Z., Li, C., Cheng, L., Hong, Y., Tong, Y. & Li, Z., Jun 30 2020, In : Food chemistry. 316, 126348.

Research output: Contribution to journalArticle

A different interpretation of dental development stages in Xujiayao 1 Middle to Late Pleistocene Homo

Šešelj, M. & Konigsberg, L. W., Jan 1 2020, (Accepted/In press) In : Journal of Human Evolution. 102745.

Research output: Contribution to journalComment/debate

Adiposity is related to neuroelectric indices of motor response preparation in preadolescent children

Walk, A. M., Raine, L. B., Kramer, A. F., Cohen, N. J., Hillman, C. H. & Khan, N. A., Jan 2020, In : International Journal of Psychophysiology. 147, p. 176-183 8 p.

Research output: Contribution to journalArticle

A Discourse on the Incorporation of Organizational Factors into Probabilistic Risk Assessment: Key Questions and Categorical Review

Pence, J. & Mohaghegh, Z., Jun 1 2020, In : Risk Analysis. 40, 6, p. 1183-1211 29 p.

Research output: Contribution to journalArticle

A genetic toolbox for metabolic engineering of Issatchenkia orientalis

Cao, M., Fatma, Z., Song, X., Hsieh, P. H., Tran, V. G., Lyon, W. L., Sayadi, M., Shao, Z., Yoshikuni, Y. & Zhao, H., May 2020, In : Metabolic Engineering. 59, p. 87-97 11 p.

Research output: Contribution to journalArticle

A golden time for nanotechnology

Chang, H. H., Gole, M. T. & Murphy, C. J., May 1 2020, In : MRS Bulletin. 45, 5, p. 387-393 7 p.

Research output: Contribution to journalArticle

Air Jet Impingement Cooling of Electronic Devices Using Additively Manufactured Nozzles

Kwon, B., Foulkes, T., Yang, T., Miljkovic, N. & King, W. P., Feb 2020, In : IEEE Transactions on Components, Packaging and Manufacturing Technology. 10, 2, p. 220-229 10 p., 8809671.

Research output: Contribution to journalArticle

Alcohol sensitivity in women after undergoing bariatric surgery: a cross-sectional study

Acevedo, M. B., Teran-Garcia, M., Bucholz, K. K., Eagon, J. C., Bartholow, B. D., Burd, N. A., Khan, N., Rowitz, B. & Pepino, M. Y., Apr 2020, In : Surgery for Obesity and Related Diseases. 16, 4, p. 536-544 9 p.

Research output: Contribution to journalArticle

All-digital histopathology by infrared-optical hybrid microscopy

Schnell, M., Mittal, S., Falahkheirkhah, K., Mittal, A., Yeh, K., Kenkel, S., Kajdacsy-Balla, A., Carney, P. S. & Bhargava, R., Feb 18 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 7, p. 3388-3396 9 p., 201912400.

Research output: Contribution to journalArticle

A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids

Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J. V. & Zhao, H., Jul 1 2020, In : Biotechnology and bioengineering. 117, 7, p. 2131-2138 8 p.

Research output: Contribution to journalArticle

An Activity-Based Sensing Approach for the Detection of Cyclooxygenase-2 in Live Cells

Yadav, A. K., Reinhardt, C. J., Arango, A. S., Huff, H. C., Dong, L., Malkowski, M. G., Das, A., Tajkhorshid, E. & Chan, J., Feb 17 2020, In : Angewandte Chemie - International Edition. 59, 8, p. 3307-3314 8 p.

Research output: Contribution to journalArticle

Anchor box optimization for object detection

Zhong, Y., Wang, J., Peng, J. & Zhang, L., Mar 2020, Proceedings - 2020 IEEE Winter Conference on Applications of Computer Vision, WACV 2020. Institute of Electrical and Electronics Engineers Inc., p. 1275-1283 9 p. 9093498. (Proceedings - 2020 IEEE Winter Conference on Applications of Computer Vision, WACV 2020).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator

Sun, H., Zhao, H. & Ang, E. L., Apr 17 2020, In : ACS synthetic biology. 9, 4, p. 698-705 8 p.

Research output: Contribution to journalArticle

An in-silico human cell model reveals the influence of spatial organization on RNA splicing

Ghaemi, Z., Peterson, J. R., Gruebele, M. & Luthey-Schulten, Z., Mar 25 2020, In : PLoS computational biology. 16, 3, e1007717.

Research output: Contribution to journalArticle

Open Access

An interview with Dr. Francesca E. Duncan

Flaws, J. A., Feb 14 2020, In : Biology of reproduction. 102, 2, p. 261-264 4 p.

Research output: Contribution to journalComment/debate

Open Access

An in vitro mimic of in-cell solvation for protein folding studies

Davis, C. M., Deutsch, J. & Gruebele, M., Jan 1 2020, (Accepted/In press) In : Protein Science.

Research output: Contribution to journalArticle

Anticoagulation and Spine Surgery

Porto, G. B. F., Jeffrey Wessell, D. O., Alvarado, A., Arnold, P. M. & Buchholz, A. L., Jan 1 2020, In : Global Spine Journal. 10, 1_suppl, p. 53S-64S

Research output: Contribution to journalArticle

Open Access

A partial-dithering strategy for edge-illumination X-ray phase-contrast tomography enabled by a joint reconstruction method

Chen, Y., Hagen, C. K., Olivo, A. & Anastasio, M. A., May 21 2020, In : Physics in medicine and biology. 65, 10, 105007.

Research output: Contribution to journalArticle

A Pathway for Degradation of Uracil to Acetyl Coenzyme A in Bacillus megaterium

Zhu, D., Wei, Y., Yin, J., Liu, D., Ang, E. L., Zhao, H. & Zhang, Y., Mar 18 2020, In : Applied and environmental microbiology. 86, 7

Research output: Contribution to journalArticle

Approximation algorithms for scheduling C-benevolent jobs on weighted machines

Yu, G. & Jacobson, S. H., Apr 2 2020, In : IISE Transactions. 52, 4, p. 432-443 12 p.

Research output: Contribution to journalArticle

A preclinical small animal imaging platform combining multi-angle photoacoustic and fluorescence projections into co-registered 3D maps

Thompson, W., Yu, A., Dumani, D. S., Cook, J., Anastasio, M. A., Emelianov, S. Y. & Ermilov, S. A., Jan 1 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 112400L. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Assessing the severity of psoriasis through multivariate analysis of optical images from non-lesional skin

Žurauskas, M., Barkalifa, R., Alex, A., Marjanovic, M., Spillman, D. R., Mukherjee, P., Neitzel, C. D., Lee, W., Medler, J., Arp, Z., Cleveland, M., Hood, S. & Boppart, S. A., Dec 1 2020, In : Scientific reports. 10, 1, 9154.

Research output: Contribution to journalArticle

Open Access

Assessment of hepatic steatosis in nonalcoholic fatty liver disease by using quantitative US

Han, A., Zhang, Y. N., Boehringer, A. S., Montes, V., Andre, M. P., Erdman, J. W., Loomba, R., Valasek, M. A., Sirlin, C. B. & O’Brien, W. D., Jan 1 2020, In : Radiology. 295, 1, p. 106-113 8 p.

Research output: Contribution to journalArticle

Assessment of peritoneal microbial features and tumor marker levels as potential diagnostic tools for ovarian cancer

Miao, R., Badger, T. C., Groesch, K., Diaz-Sylvester, P. L., Wilson, T., Ghareeb, A., Martin, J. A., Cregger, M., Welge, M., Bushell, C., Auvil, L., Zhu, R., Brard, L. & Braundmeier-Fleming, A., Jan 1 2020, In : PloS one. 15, 1, e0227707.

Research output: Contribution to journalArticle

Open Access

Asymptotic analysis for multi-objective sequential stochastic assignment problems

Yu, G., Jacobson, S. H. & Kiyavash, N., Feb 17 2020, In : Stochastics. 92, 2, p. 223-264 42 p.

Research output: Contribution to journalArticle

Atmospheric pressure microwave plasma for aluminum surface cleaning

Bónová, L., Zhu, W., Patel, D. K., Krogstad, D. V. & Ruzic, D. N., Mar 1 2020, In : Journal of Vacuum Science and Technology A: Vacuum, Surfaces and Films. 38, 2, 5132912.

Research output: Contribution to journalArticle

Bacterial 1,4-α-glucan branching enzymes: characteristics, preparation and commercial applications

Ban, X., Dhoble, A. S., Li, C., Gu, Z., Hong, Y., Cheng, L., Holler, T. P., Kaustubh, B. & Li, Z., Apr 2 2020, In : Critical Reviews in Biotechnology. 40, 3, p. 380-396 17 p.

Research output: Contribution to journalReview article

Bacteroidetes can be a rich source of novel lanthipeptides: The case study of Pedobacter lusitanus

Caetano, T., van der Donk, W. & Mendo, S., May 2020, In : Microbiological Research. 235, 126441.

Research output: Contribution to journalArticle

Band Alignments of Ternary Wurtzite and Zincblende III-Nitrides Investigated by Hybrid Density Functional Theory

Tsai, Y. C. & Bayram, C., Jan 1 2020, (Accepted/In press) In : ACS Omega.

Research output: Contribution to journalArticle

Open Access

Better Together: Co-operation and Antagonism between RNA Polymerases during Transcription In Vivo

Kim, S., Jan 1 2020, In : BioEssays. 42, 1, 1900215.

Research output: Contribution to journalComment/debate

Open Access

Biodiversity of protists and nematodes in the wild nonhuman primate gut

Mann, A. E., Mazel, F., Lemay, M. A., Morien, E., Billy, V., Kowalewski, M., Di Fiore, A., Link, A., Goldberg, T. L., Tecot, S., Baden, A. L., Gomez, A., Sauther, M. L., Cuozzo, F. P., Rice, G. A. O., Dominy, N. J., Stumpf, R., Lewis, R. J., Swedell, L., Amato, K. & 1 others, Wegener Parfrey, L., Feb 1 2020, In : ISME Journal. 14, 2, p. 609-622 14 p.

Research output: Contribution to journalArticle

Biomedical Imaging and Analysis in the Age of Big Data and Deep Learning

Duncan, J. S., Insana, M. F. & Ayache, N., Jan 2020, In : Proceedings of the IEEE. 108, 1, p. 3-10 8 p., 8944337.

Research output: Contribution to journalArticle

Biosynthetic engineering of the antifungal, anti-MRSA auroramycin

Yeo, W. L., Heng, E., Tan, L. L., Lim, Y. W., Ching, K. C., Tsai, D. J., Jhang, Y. W., Lauderdale, T. L., Shia, K. S., Zhao, H., Ang, E. L., Zhang, M. M., Lim, Y. H. & Wong, F. T., Jan 6 2020, In : Microbial cell factories. 19, 1, 3.

Research output: Contribution to journalArticle

Open Access

Biosystems design by directed evolution

Wang, Y., Yu, X. & Zhao, H., Mar 1 2020, In : AIChE Journal. 66, 3, e16716.

Research output: Contribution to journalReview article

Body mass and cardiorespiratory fitness are associated with altered brain metabolism

Larsen, R. J., Raine, L. B., Hillman, C. H., Kramer, A. F., Cohen, N. J. & Barbey, A. K., Apr 29 2020, (Accepted/In press) In : Metabolic Brain Disease.

Research output: Contribution to journalArticle

Catalytic Microgelators for Decoupled Control of Gelation Rate and Rigidity of the Biological Gels

Hong, Y. T., Bregante, D. T., Lee, J. C. W., Seo, Y., Kim, D. H., Lee, Y. J., Schook, L. B., Jeon, H., Sung, H. J., Flaherty, D. W., Rogers, S. A. & Kong, H., Jan 10 2020, In : Journal of Controlled Release. 317, p. 166-180 15 p.

Research output: Contribution to journalArticle

Open Access

Challenges and Opportunities in the Detection of Safety-Critical Cyberphysical Attacks

Lin, H., Alemzadeh, H., Kalbarczyk, Z. & Iyer, R., Mar 2020, Computer, 53, 3, p. 26-37 12 p.

Research output: Contribution to specialist publicationArticle

Changes in anterior and posterior hippocampus differentially predict item-space, item-time, and item-item memory improvement

Lee, J. K., Fandakova, Y., Johnson, E. G., Cohen, N. J., Bunge, S. A. & Ghetti, S., Feb 2020, In : Developmental Cognitive Neuroscience. 41, 100741.

Research output: Contribution to journalArticle

Open Access

Chaperones Hsc70 and Hsp70 Bind to the Protein PGK Differently inside Living Cells

Guin, D. & Gruebele, M., May 7 2020, In : Journal of Physical Chemistry B. 124, 18, p. 3629-3635 7 p.

Research output: Contribution to journalArticle