Research Output 1973 2020

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Review article
2020

Emerging molecular biology tools and strategies for engineering natural product biosynthesis

Xu, W., Klumbys, E., Ang, E. L. & Zhao, H., Jun 2020, In : Metabolic Engineering Communications. 10, e00108.

Research output: Contribution to journalReview article

Open Access
Molecular biology
Biosynthesis
Biological Products
Molecular Biology
Enzymes
2019

Advancing point-of-care diagnostics of metabolites through engineering semisynthetic proteins

Zhang, J. J. & Lu, Y., Apr 2019, In : Clinical Chemistry. 65, 4, p. 507-509 3 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Protein Engineering
Metabolites
Proteins

Antimicrobial effects on swine gastrointestinal microbiota and their accompanying antibiotic resistome

Zeineldin, M., Aldridge, B. M. & Lowe, J. F., Jan 1 2019, In : Frontiers in Microbiology. 10, MAY, 1035.

Research output: Contribution to journalReview article

Open Access
Swine
Anti-Bacterial Agents
Microbiota
Industry
Health

Bioapplications of DNA nanotechnology at the solid-liquid interface

Wang, W., Yu, S., Huang, S., Bi, S., Han, H., Zhang, J. R., Lu, Y. & Zhu, J. J., Sep 21 2019, In : Chemical Society Reviews. 48, 18, p. 4892-4920 29 p.

Research output: Contribution to journalReview article

Nanotechnology
DNA
Liquids
Cell membranes
Nanoparticles

Carbon assimilation in crops at high temperatures

Slattery, R. A. & Ort, D. R., Oct 1 2019, In : Plant Cell and Environment. 42, 10, p. 2750-2758 9 p.

Research output: Contribution to journalReview article

Open Access
Carbon
Temperature
Photosynthesis
crops
temperature

Contribution of the Mucosal Microbiota to Bovine Respiratory Health

Zeineldin, M., Lowe, J. F. & Aldridge, B. M., Sep 2019, In : Trends in Microbiology. 27, 9, p. 753-770 18 p.

Research output: Contribution to journalReview article

Microbiota
Cattle Diseases
Health
Ecosystem
Dysbiosis

Crosstalk between Estrogen Signaling and Breast Cancer Metabolism

Kulkoyluoglu-Cotul, E., Arca, A. & Madak-Erdogan, Z., Jan 2019, In : Trends in Endocrinology and Metabolism. 30, 1, p. 25-38 14 p.

Research output: Contribution to journalReview article

Estrogens
Breast Neoplasms
Estrogen Receptors
Drug Resistance
Clone Cells

Darwinian bee-keeping: lessons from the wild

Robinson, G., Jul 1 2019, In : Nature. 571, 7763, p. 34-35

Research output: Contribution to journalReview article

Discovery of and Insights into DNA “Codes” for Tunable Morphologies of Metal Nanoparticles

Satyavolu, N. S. R., Loh, K. Y., Tan, L. H. & Lu, Y., Jun 26 2019, In : Small. 15, 26, 1900975.

Research output: Contribution to journalReview article

Metal Nanoparticles
Metal nanoparticles
DNA
Nanoparticles
Nanostructures

Drinking Water Microbiome Project: Is it Time?

Hull, N. M., Ling, F., Pinto, A. J., Albertsen, M., Jang, H. G., Hong, P. Y., Konstantinidis, K. T., LeChevallier, M., Colwell, R. R. & Liu, W-T., Aug 2019, In : Trends in Microbiology. 27, 8, p. 670-677 8 p.

Research output: Contribution to journalReview article

Microbiota
Drinking Water
Practice Guidelines
Public Health
Learning

Economics of plant oil recovery: A review

Cheng, M. H., Dien, B. S. & Singh, V., Mar 2019, In : Biocatalysis and Agricultural Biotechnology. 18, 101056.

Research output: Contribution to journalReview article

plant fats and oils
Plant Oils
pressing
Economics
Costs and Cost Analysis

Effectiveness of Workplace Lactation Interventions on Breastfeeding Outcomes in the United States: An Updated Systematic Review

Kim, J. H., Shin, J. C. & Donovan, S. M., Feb 1 2019, In : Journal of Human Lactation. 35, 1, p. 100-113 14 p.

Research output: Contribution to journalReview article

Breast Feeding
Lactation
Workplace
Breast
Parental Leave

Emergence of Hierarchical Modularity in Evolving Networks Uncovered by Phylogenomic Analysis

Caetano-Anollés, G., Aziz, M. F., Mughal, F., Gräter, F., Koç, I., Caetano-Anollés, K. & Caetano-Anollés, D., Jan 1 2019, In : Evolutionary Bioinformatics. 15

Research output: Contribution to journalReview article

Open Access
Metabolomics
Metabolic Networks and Pathways
Transcriptome
Proteins
protein
Methanosarcina
Hydrogenase
Archaea
Methane
formic acid

Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures

Neumann, E. K., Do, T. D., Comi, T. J. & Sweedler, J. V., Jul 8 2019, In : Angewandte Chemie - International Edition. 58, 28, p. 9348-9364 17 p.

Research output: Contribution to journalReview article

Chemical analysis
Throughput
Imaging techniques
Data storage equipment

Genetic strategies for improving crop yields

Bailey-Serres, J., Parker, J. E., Ainsworth, E. A., Oldroyd, G. E. D. & Schroeder, J. I., Nov 7 2019, In : Nature. 575, 7781, p. 109-118 10 p.

Research output: Contribution to journalReview article

Open Access
Infrared Rays
Weather
Agriculture
Climate
Population

Genome organization around nuclear speckles

Chen, Y. & Belmont, A. S., Apr 2019, In : Current Opinion in Genetics and Development. 55, p. 91-99 9 p.

Research output: Contribution to journalReview article

Microscopy
Genome
Chromosome Mapping
Eukaryotic Cells
Cell Nucleus

Health benefits of yogurt among infants and toddlers aged 4 to 24 months: A systematic review

Donovan, S. M. & Rao, G., Jan 1 2019, In : Nutrition reviews. 77, 7, p. 478-486 9 p.

Research output: Contribution to journalReview article

Yogurt
Insurance Benefits
Cohort Studies
Cultured Milk Products
Information Storage and Retrieval

Impact factor impacts on early-career scientist careers

Berenbaum, M. R., Aug 20 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 34, p. 16659-16662 4 p.

Research output: Contribution to journalReview article

Open Access

Individual variation and the challenge hypothesis

Bell, A. M., Jan 1 2019, In : Hormones and Behavior. 104549.

Research output: Contribution to journalReview article

Social Environment
Aggression
Personality
Hormones
Biological Phenomena
Computer Simulation
Computing Methodologies
DNA Shuffling
Genome
Technology

Integration of machine learning and pharmacogenomic biomarkers for predicting response to antidepressant treatment: Can computational intelligence be used to augment clinical assessments?

Athreya, A. P., Iyer, R., Wang, L., Weinshilboum, R. M. & Bobo, W. V., Jan 1 2019, In : Pharmacogenomics. 20, 14, p. 983-988 6 p.

Research output: Contribution to journalReview article

Open Access
Artificial Intelligence
Pharmacogenetics
Antidepressive Agents
Biomarkers
Machine Learning

Investigating brain d-serine: Advocacy for good practices

Mothet, J. P., Billard, J. M., Pollegioni, L., Coyle, J. T. & Sweedler, J. V., May 2019, In : Acta Physiologica. 226, 1, e13257.

Research output: Contribution to journalReview article

Serine
Amino Acids
Brain
Molecular Models
Practice Guidelines

Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors

Hwang, K., Mou, Q., Lake, R. J., Xiong, M., Holland, B. & Lu, Y., Oct 21 2019, In : Inorganic Chemistry. 58, 20, p. 13696-13708 13 p.

Research output: Contribution to journalReview article

Catalytic DNA
Energy transfer
Metal ions
metal ions
Metals

Modulating anxiety and activity

Rudolph, U. & Moss, S. J., Oct 11 2019, In : Science. 366, 6462, p. 185-186 2 p.

Research output: Contribution to journalReview article

GABA-A Receptors
Anxiety Disorders
Benzodiazepines
Anxiety

Molecular Engineering of Functional Nucleic Acid Nanomaterials toward In Vivo Applications

Zhang, J. J., Lan, T. & Lu, Y., Mar 21 2019, In : Advanced Healthcare Materials. 8, 6, 1801158.

Research output: Contribution to journalReview article

Nanostructures
Nucleic acids
Nanostructured materials
Nucleic Acids
Point-of-Care Systems

Molecular evolution of the major arthropod chemoreceptor gene families

Robertson, H. M., Jan 7 2019, In : Annual Review of Entomology. 64, p. 227-242 16 p.

Research output: Contribution to journalReview article

chemoreceptors
arthropod
arthropods
ligand
receptors

Nuclear receptors, cholesterol homeostasis and the immune system

Shahoei, S. H. & Nelson, E. R., Jul 2019, In : Journal of Steroid Biochemistry and Molecular Biology. 191, 105364.

Research output: Contribution to journalReview article

Immune system
Cytoplasmic and Nuclear Receptors
Immune System
Homeostasis
Cholesterol

Ovulation: Parallels with inflammatory processes

Duffy, D. M., Ko, C., Jo, M., Brannstrom, M. & Curry, T. E., Jan 1 2019, In : Endocrine reviews. 40, 2, p. 369-416 48 p.

Research output: Contribution to journalReview article

Ovulation
Oocytes
Granulosa Cells
Theca Cells
Inflammation

Oxysterols and nuclear receptors

Ma, L. & Nelson, E., Mar 15 2019, In : Molecular and Cellular Endocrinology. 484, p. 42-51 10 p.

Research output: Contribution to journalReview article

Cytoplasmic and Nuclear Receptors
T-cells
Liver
Cholesterol
Ligands

Perspective: Understanding the Intersection of Climate/Environmental Change, Health, Agriculture, and Improved Nutrition - A Case Study: Type 2 Diabetes

Finley, J., Jaacks, L. M., Peters, C. J., Ort, D. R., Aimone, A. M., Conrad, Z. & Raiten, D. J., Sep 1 2019, In : Advances in Nutrition. 10, 5, p. 731-738 8 p.

Research output: Contribution to journalReview article

Open Access
Environmental Health
Climate Change
Agriculture
noninsulin-dependent diabetes mellitus
Type 2 Diabetes Mellitus

Plant Networks as Traits and Hypotheses: Moving Beyond Description

Marshall-Colon, A. & Kliebenstein, D. J., Sep 2019, In : Trends in Plant Science. 24, 9, p. 840-852 13 p.

Research output: Contribution to journalReview article

Biological Sciences
organisms
phenotype
gene interaction
linkage (genetics)

Preface

Donovan, S. M., German, J. B., Lönnerdal, B. & Lucas, A., Jan 1 2019, In : Nestle Nutrition Institute Workshop Series. 90, p. VII-IX

Research output: Contribution to journalReview article

Open Access

Production of biofuels and chemicals from xylose using native and engineered yeast strains

Kwak, S., Jo, J. H., Yun, E. J., Jin, Y-S. & Seo, J. H., Mar 1 2019, In : Biotechnology Advances. 37, 2, p. 271-283 13 p.

Research output: Contribution to journalReview article

Xylose
Biofuels
Yeast
Yeasts
Coenzymes

Provocative questions in osteosarcoma basic and translational biology: A report from the Children's Oncology Group

Roberts, R. D., Lizardo, M. M., Reed, D. R., Hingorani, P., Glover, J., Allen-Rhoades, W., Fan, T., Khanna, C., Sweet-Cordero, E. A., Cash, T., Bishop, M. W., Hegde, M., Sertil, A. R., Koelsche, C., Mirabello, L., Malkin, D., Sorensen, P. H., Meltzer, P. S., Janeway, K. A., Gorlick, R. & 1 others, Crompton, B. D., Oct 15 2019, In : Cancer. 125, 20, p. 3514-3525 12 p.

Research output: Contribution to journalReview article

Osteosarcoma
Poisons
Research
Epigenomics
Lung Diseases

Quantifying the contribution of microbial immigration in engineered water systems

Mei, R. & Liu, W. T., Nov 6 2019, In : Microbiome. 7, 1, 144.

Research output: Contribution to journalReview article

Open Access
Emigration and Immigration
Water
High-Throughput Nucleotide Sequencing
Population
Ecosystem

Reactive oxygen species-responsive drug delivery systems for the treatment of neurodegenerative diseases

Ballance, W. C., Qin, E. C., Chung, H. J., Gillette, M. L. & Kong, H. J., Oct 2019, In : Biomaterials. 217, 119292.

Research output: Contribution to journalReview article

Neurodegenerative diseases
Drug Delivery Systems
Neurodegenerative Diseases
Reactive Oxygen Species
Oxygen

Recent progress in nanomaterials for nucleic acid delivery in cancer immunotherapy

Mei, Y., Wang, R., Jiang, W., Bo, Y., Zhang, T., Yu, J., Cheng, M., Wu, Y., Cheng, J. & Ma, W., Jul 2019, In : Biomaterials Science. 7, 7, p. 2640-2651 12 p.

Research output: Contribution to journalReview article

Nucleic acids
RNA
Nanostructured materials
Nucleic Acids
Small Interfering RNA

Skeletal Muscle Adaptations and Passive Muscle Stiffness in Cerebral Palsy: A Literature Review and Conceptual Model

Tisha, A. L., Armstrong, A. A., Wagoner Johnson, A. J. & Lopez-Ortiz, C., Feb 2019, In : Journal of Applied Biomechanics. 35, 1, p. 68-79 12 p.

Research output: Contribution to journalReview article

Cerebral Palsy
Skeletal Muscle
Muscles
Physiological Adaptation
Sarcomeres

Speaking of gender bias

Berenbaum, M. R., Apr 23 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 17, p. 8086-8088 3 p.

Research output: Contribution to journalReview article

Open Access

Supramolecular nanotheranostics

Chen, X., Zheng, G., Cheng, J. & Yang, Y. Y., Jan 1 2019, In : Theranostics. 9, 11, p. 3014-3016 3 p.

Research output: Contribution to journalReview article

Open Access
Research

Taming expectations of metformin as a treatment to extend healthspan

Konopka, A. R. & Miller, B. F., Apr 15 2019, In : GeroScience. 41, 2, p. 101-108 8 p.

Research output: Contribution to journalReview article

Metformin
Chronic Disease
Insurance Benefits
Clinical Trials
Pharmaceutical Preparations

Teaching an Old Virus New Tricks: A Review on New Approaches to Study Age-Old Questions in Influenza Biology

Lakdawala, S. S., Lee, N. & Brooke, C. B., Oct 4 2019, In : Journal of Molecular Biology. 431, 21, p. 4247-4258 12 p.

Research output: Contribution to journalReview article

Orthomyxoviridae
Human Influenza
Teaching
Viruses
Virus Assembly

The bare necessities: Uncovering essential and condition-critical genes with transposon sequencing

Shields, R. C. & Jensen, P. A., Apr 2019, In : Molecular Oral Microbiology. 34, 2, p. 39-50 12 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Microbial Interactions
Bacteria
Bacterial Genomes
Biological Phenomena

The challenge of converting gram-positive-only compounds into broad-spectrum antibiotics

Richter, M. F. & Hergenrother, P. J., Jan 1 2019, In : Annals of the New York Academy of Sciences. 1435, 1, p. 18-38 21 p.

Research output: Contribution to journalReview article

Anti-Bacterial Agents
Escherichia coli
Gram-Negative Bacterial Infections
Guidelines
Pathogens

The costs of sugar production from different feedstocks and processing technologies

Cheng, M. H., Huang, H., Dien, B. S. & Singh, V., May 1 2019, In : Biofuels, Bioproducts and Biorefining. 13, 3, p. 723-739 17 p.

Research output: Contribution to journalReview article

Sugars
Feedstocks
Processing
Crops
Costs

The influence of rising tropospheric carbon dioxide and ozone on plant productivity

Ainsworth, E. A., Lemonnier, P. & Wedow, J. M., Jan 1 2019, In : Plant Biology.

Research output: Contribution to journalReview article

Open Access
ozone
carbon dioxide
pollutants
productivity
terrestrial ecosystem

Translating human cancer sequences into personalized porcine cancer models

Xu, C., Wu, S., Schook, L. B. & Schachtschneider, K. M., Jan 1 2019, In : Frontiers in Oncology. 9, FEB, 00105.

Research output: Contribution to journalReview article

Open Access
Swine
Neoplasms
Precision Medicine
Mutation
Technology
Fluorescence microscopy
Fluorescence Microscopy
Epigenomics
Molecules
Gene expression