Research Output 1960 2018

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Review article
2018

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & DeLucia, E. H. Jan 15 2018 In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journalReview article

alley cropping
species diversity
crop
crops
fodder

Applications of power ultrasound in oriented modification and degradation of pectin: A review

Wang, W., Chen, W., Zou, M., Lv, R., Wang, D., Hou, F., Feng, H., Ma, X., Zhong, J., Ding, T., Ye, X. & Liu, D. Oct 1 2018 In : Journal of Food Engineering. 234, p. 98-107 10 p.

Research output: Contribution to journalReview article

pectins
Ultrasonics
Environmental technology
Degradation
degradation

Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates

Sun, H., Zhang, H., Ang, E. L. & Zhao, H. Apr 1 2018 In : Bioorganic and Medicinal Chemistry. 26, 7, p. 1275-1284 10 p.

Research output: Contribution to journalReview article

Biocatalysis
Enzymes
Pharmaceutical Preparations
Oxidoreductases
Protein Engineering

Bioengineered Liver Models for Drug Testing and Cell Differentiation Studies

Underhill, G. H. & Khetani, S. R. Mar 1 2018 In : CMGH. 5, 3, p. 426-439.e1

Research output: Contribution to journalReview article

Bioprinting
Microfluidics
Cell Differentiation
Hepatocytes
Liver

Circadian redox rhythms in the regulation of neuronal excitability

Bothwell, M. Y. & Gillette, M. U. May 1 2018 In : Free Radical Biology and Medicine. 119, p. 45-55 11 p.

Research output: Contribution to journalReview article

Circadian Rhythm
Oxidation-Reduction
Suprachiasmatic Nucleus
Membranes
Ion Channels

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C. J., Cerri, C. E. P., Ceulemans, R., Davies, C. A., DeLucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P. Mar 1 2018 In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

energy crops
bioenergy
Land use
Crops
Greenhouse gases

Correlates and Consequences of Worker Polymorphism in Ants

Wills, B. D., Powell, S., Rivera, M. D. & Suarez, A. V. Jan 7 2018 In : Annual Review of Entomology. 63, p. 575-598 24 p.

Research output: Contribution to journalReview article

eusociality
labor division
life history trait
polymorphism
ant

CryoEM-based hybrid modeling approaches for structure determination

Cassidy, C. K., Himes, B. A., Luthey-Schulten, Z. & Zhang, P. Jun 1 2018 In : Current Opinion in Microbiology. 43, p. 14-23 10 p.

Research output: Contribution to journalReview article

Cryoelectron Microscopy

Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L. & Cunningham, B. T. Jun 1 2018 In : Chemosensors. 6, 2, 13

Research output: Contribution to journalReview article

Photoionization
optical resonators
counting
Cracks
nanoparticles

Earth BioGenome Project: Sequencing life for the future of life

Lewin, H. A. , Robinson, G. E. , Kress, W. J. , Baker, W. J. , Coddington, J. , Crandall, K. A. , Durbin, R. , Edwards, S. V. , Forest, F. , Gilbert, M. T. P. , Goldstein, M. M. , Grigoriev, I. V. , Hackett, K. J. , Haussler, D. , Jarvis, E. D. , Johnson, W. E. , Patrinos, A. , Richards, S. , Castilla-Rubio, J. C. , Van Sluys, M. A. & 4 others Soltis, P. S., Xu, X., Yang, H. & Zhang, G. Apr 24 2018 In : Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. 4325-4333 9 p.

Research output: Contribution to journalReview article

biodiversity
resource
endangered species
repository
ecosystem service

Engineering Polymersomes for Diagnostics and Therapy

Leong, J., Teo, J. Y., Aakalu, V. K., Yang, Y. Y. & Kong, H. Apr 25 2018 In : Advanced Healthcare Materials. 7, 8, 1701276

Research output: Contribution to journalReview article

Slip forming
Drug delivery
Self assembly
Reheat cycle
Imaging techniques

Engineering the Surface of Therapeutic "living" Cells

Park, J., Andrade, B., Seo, Y., Kim, M. J., Zimmerman, S. C. & Kong, H. Feb 28 2018 In : Chemical reviews. 118, 4, p. 1664-1690 27 p.

Research output: Contribution to journalReview article

Cell engineering
Drug Carriers
Adhesion
Tissue
Nanoparticles
Biocatalysis
Cracks
Enzymes
Synthetic Biology
Metabolic Engineering

Fatigue behavior of high-entropy alloys: A review

Chen, P. Y., Lee, C., Wang, S. Y., Seifi, M., Lewandowski, J. J., Dahmen, K. A., Jia, H. L., Xie, X., Chen, B. L., Yeh, J. W., Tsai, C. W., Yuan, T. & Liaw, P. K. Feb 1 2018 In : Science China Technological Sciences. 61, 2, p. 168-178 11 p.

Research output: Contribution to journalReview article

Entropy
Fatigue of materials
Fatigue crack propagation
Bending (deformation)
Solid solutions

Genomic Approaches to Posttraumatic Stress Disorder: The Psychiatric Genomic Consortium Initiative

Nievergelt, C. M., Ashley-Koch, A. E., Dalvie, S., Hauser, M. A., Morey, R. A., Smith, A. K. & Uddin, M. May 15 2018 In : Biological Psychiatry. 83, 10, p. 831-839 9 p.

Research output: Contribution to journalReview article

Post-Traumatic Stress Disorders
Psychiatry
Genome-Wide Association Study
Genomics
Physiological Sexual Dysfunctions

Genomic tools for behavioural ecologists to understand repeatable individual differences in behaviour

Bengston, S. E., Dahan, R. A., Donaldson, Z., Phelps, S. M., Van Oers, K., Sih, A. & Bell, A. M. Jun 1 2018 In : Nature Ecology and Evolution. 2, 6, p. 944-955 12 p.

Research output: Contribution to journalReview article

ecologists
genomics
animal
animals
individual variation

How many human proteoforms are there?

Aebersold, R. , Agar, J. N. , Amster, I. J. , Baker, M. S. , Bertozzi, C. R. , Boja, E. S. , Costello, C. E. , Cravatt, B. F. , Fenselau, C. , Garcia, B. A. , Ge, Y. , Gunawardena, J. , Hendrickson, R. C. , Hergenrother, P. J. , Huber, C. G. , Ivanov, A. R. , Jensen, O. N. , Jewett, M. C. , Kelleher, N. L. , Kiessling, L. L. & 30 others Krogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., Maccoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T. & Wysocki, V. H. Feb 14 2018 In : Nature chemical biology. 14, 3, p. 206-214 9 p.

Research output: Contribution to journalReview article

Post Translational Protein Processing
Proteins
Proteome
Proteomics
Amino Acid Sequence

Microbiome-mediated effects of the Mediterranean diet on inflammation

Bailey, M. A. & Holscher, H. D. May 1 2018 In : Advances in Nutrition. 9, 3, p. 93-206 114 p.

Research output: Contribution to journalReview article

Mediterranean Diet
endotoxemia
Mediterranean diet
Endotoxemia
Microbiota

Nanodiscs: A Controlled Bilayer Surface for the Study of Membrane Proteins

McLean, M. A., Gregory, M. C. & Sligar, S. G. May 20 2018 In : Annual Review of Biophysics. 47, p. 107-124 18 p.

Research output: Contribution to journalReview article

Photosensitizers
Water recycling
Membrane Proteins
Proteins
Membranes

Phloem function: a key to understanding and manipulating plant responses to rising atmospheric [CO2]?

Ainsworth, E. A. & Lemonnier, P. Jun 1 2018 In : Current Opinion in Plant Biology. 43, p. 50-56 7 p.

Research output: Contribution to journalReview article

phloem loading
phloem
plant response
sucrose
blood vessels

Recent developments in the application of P450 based biocatalysts

Wei, Y., Ang, E. L. & Zhao, H. Apr 1 2018 In : Current Opinion in Chemical Biology. 43, p. 1-7 7 p.

Research output: Contribution to journalReview article

Mixed Function Oxygenases
Enzymes
Biosynthesis
Biological Products
Cytochrome P-450 Enzyme System

RiPP antibiotics: biosynthesis and engineering potential

Hudson, G. A. & Mitchell, D. A. Oct 1 2018 In : Current Opinion in Microbiology. 45, p. 61-69 9 p.

Research output: Contribution to journalReview article

Anti-Bacterial Agents
Biosynthetic Pathways
Biological Products
Peptide Synthases
Synthetic Biology

Simulating biological processes: Stochastic physics from whole cells to colonies

Earnest, T. M., Cole, J. A. & Luthey-Schulten, Z. Apr 5 2018 In : Reports on Progress in Physics. 81, 5, 052601

Research output: Contribution to journalReview article

stochastic processes
physics
cells
biological evolution
ribosomes

Single Cell Neurometabolomics

Qi, M., Philip, M. C., Yang, N. & Sweedler, J. V. Jan 17 2018 In : ACS Chemical Neuroscience. 9, 1, p. 40-50 11 p.

Research output: Contribution to journalReview article

Slip forming
Neurochemistry
Metabolomics
Capillary Electrophoresis
Oligodendroglia

The Molecular Industrial Revolution: Automated Synthesis of Small Molecules

Trobe, M. & Burke, M. D. Apr 9 2018 In : Angewandte Chemie - International Edition. 57, 16, p. 4192-4214 23 p.

Research output: Contribution to journalReview article

3D printers
Automation
Molecules
Innovation
Direction compound

The significance of cholesterol and its metabolite, 27-hydroxycholesterol in breast cancer

Nelson, E. R. May 5 2018 In : Molecular and Cellular Endocrinology. 466, p. 73-80 8 p.

Research output: Contribution to journalReview article

Metabolites
Cholesterol
Breast Neoplasms
Life Style
Selective Estrogen Receptor Modulators

Towards the generalized iterative synthesis of small molecules

Lehmann, J. W., Blair, D. J. & Burke, M. D. Jan 1 2018 In : Nature Reviews Chemistry. 2, 2, 0115

Research output: Contribution to journalReview article

Slip forming
Molecules
Tall buildings
Macromolecules
Drug products

Transmission, evolution, and endogenization: Lessons learned from recent retroviral invasions

Greenwood, A. D., O'Brien, S. P., Roca, A. L. & Eiden, M. V. Mar 1 2018 In : Microbiology and Molecular Biology Reviews. 82, 1, e00044-17

Research output: Contribution to journalReview article

Endogenous Retroviruses
Retroviridae
Computational Biology
Phascolarctidae
Germ Cells

Urban Neighborhood and Residential Factors Associated with Breast Cancer in African American Women: a Systematic Review

Smith, B. P. & Madak-Erdogan, Z. Apr 1 2018 In : Hormones and Cancer. 9, 2, p. 71-81 11 p.

Research output: Contribution to journalReview article

African Americans
Breast Neoplasms
Delayed Diagnosis
Mammography
Social Class
2017

27-Hydroxycholesterol, an endogenous selective estrogen receptor modulator

He, S. & Nelson, E. R. Oct 1 2017 In : Maturitas. 104, p. 29-35 7 p.

Research output: Contribution to journalReview article

Selective Estrogen Receptor Modulators
Estrogen Receptors
Cholesterol
Physiology
Cardiovascular Physiological Phenomena

Adolescence and reward: Making sense of neural and behavioral changes amid the chaos

Walker, D. M., Bell, M. R., Flores, C., Gulley, J. M., Willing, J. & Paul, M. J. Nov 8 2017 In : Journal of Neuroscience. 37, 45, p. 10855-10866 12 p.

Research output: Contribution to journalReview article

Reward
Hormones
Adolescent Development
Social Isolation
Risk-Taking

A New Era of Genome Integration - Simply Cut and Paste!

Liu, Z., Liang, Y., Ang, E. L. & Zhao, H. Apr 21 2017 In : ACS Synthetic Biology. 6, 4, p. 601-609 9 p.

Research output: Contribution to journalReview article

Ointments
Genes
Homologous Recombination
Genome
Synthetic Biology

Bacteriophage removal efficiency as a validation and operational monitoring tool for virus reduction in wastewater reclamation: Review

Amarasiri, M., Kitajima, M., Nguyen, T. H., Okabe, S. & Sano, D. Jan 1 2017 In : Water Research. 121, p. 258-269 12 p.

Research output: Contribution to journalReview article

Wastewater reclamation
Bacteriophages
bacteriophage
Viruses
virus

Bio-nano interface: The impact of biological environment on nanomaterials and their delivery properties

Cai, K., Wang, A. Z., Yin, L. & Cheng, J. Oct 10 2017 In : Journal of Controlled Release. 263, p. 211-222 12 p.

Research output: Contribution to journalReview article

Nanomedicine
Nanostructures
Medicine

Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids

Yu, Y., Cui, C., Wang, J. & Lu, Y. Feb 1 2017 In : Science China Chemistry. 60, 2, p. 188-200 13 p.

Research output: Contribution to journalReview article

Metalloproteins
Amino Acids
Enzymes
Azurin
Ribonucleotide Reductases

Breaking the silence: new strategies for discovering novel natural products

Ren, H., Wang, B. & Zhao, H. Dec 1 2017 In : Current Opinion in Biotechnology. 48, p. 21-27 7 p.

Research output: Contribution to journalReview article

Biological Products
Multigene Family
Genes
Throughput
Pharmaceutical Preparations

Categorizing Cells on the Basis of their Chemical Profiles: Progress in Single-Cell Mass Spectrometry

Comi, T. J., Do, T. D., Rubakhin, S. S. & Sweedler, J. V. Mar 22 2017 In : Journal of the American Chemical Society. 139, 11, p. 3920-3929 10 p.

Research output: Contribution to journalReview article

Metabolites
Mass spectrometry
Amplification
amplification
Mass Spectrometry

Clinical translation of handheld optical coherence tomography: Practical considerations and recent advancements

Monroy, G. L., Won, J., Spillman, D. R., Dsouza, R. & Boppart, S. A. Dec 1 2017 In : Journal of biomedical optics. 22, 12, 121715

Research output: Contribution to journalReview article

Approximation theory
Plasma diagnostics
plasma diagnostics
Optical tomography
medicine

Computational optical coherence tomography [invited]

Liu, Y. Z., South, F. A., Xu, Y., Scott Carney, P. & Boppart, S. A. Mar 1 2017 In : Biomedical Optics Express. 8, 3, p. 1549-1574 26 p.

Research output: Contribution to journalReview article

Optical Coherence Tomography
imaging techniques
tomography
Physics
aberration

Developmental Origins of Hypothalamic Cells Controlling Reproduction

Biehl, M. J. & Raetzman, L. T. Mar 1 2017 In : Seminars in Reproductive Medicine. 35, 2, p. 121-129 9 p.

Research output: Contribution to journalReview article

Hypothalamus
Reproduction
Kisspeptins
Gonadal Hormones
Anterior Hypothalamus

Dietary fiber and prebiotics and the gastrointestinal microbiota

Holscher, H. D. Mar 4 2017 In : Gut Microbes. 8, 2, p. 172-184 13 p.

Research output: Contribution to journalReview article

Prebiotics
Dietary Fiber
Microbiota
Polysaccharides
Gastrointestinal Tract

DNAzyme sensors for detection of metal ions in the environment and imaging them in living cells

McGhee, C. E., Loh, K. Y. & Lu, Y. Jun 1 2017 In : Current Opinion in Biotechnology. 45, p. 191-201 11 p.

Research output: Contribution to journalReview article

Catalytic DNA
Metal ions
Metals
Cells
Ions

Dynamic Thermal management for aerospace technology: Review and outlook

Doty, J., Yerkes, K., Byrd, L., Murthy, J., Alleyne, A., Wolff, M., Heister, S. & Fisher, T. S. Jan 1 2017 In : Journal of Thermophysics and Heat Transfer. 31, 1, p. 86-98 13 p.

Research output: Contribution to journalReview article

electric power
aerospace vehicles
chemical energy
propulsion
thermal energy

Engineering biological systems using automated biofoundries

Chao, R., Mishra, S., Si, T. & Zhao, H. Jul 1 2017 In : Metabolic Engineering. 42, p. 98-108 11 p.

Research output: Contribution to journalReview article

Microbial Genetics
Bioengineering
Foundries
Biological systems
Biotechnology

Escapement mechanisms and the conversion of disequilibria; the engines of creation

Branscomb, E., Biancalani, T., Goldenfeld, N. & Russell, M. Mar 17 2017 In : Physics Reports. 677, p. 1-60 60 p.

Research output: Contribution to journalReview article

engines
cascades
free energy
energy
causes

Fundamental deformation behavior in high-entropy alloys: An overview

Diao, H. Y., Feng, R., Dahmen, K. A. & Liaw, P. K. Oct 1 2017 In : Current Opinion in Solid State and Materials Science. 21, 5, p. 252-266 15 p.

Research output: Contribution to journalReview article

Entropy
Mechanical properties
Transition metals
Refractory metals
Twinning

Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function

Thor, S., Peterson, J. R. & Luthey-Schulten, Z. Jan 1 2017 In : Archaea. 2017, 9763848

Research output: Contribution to journalReview article

genetically engineered microorganisms
Archaea
Metabolic Networks and Pathways
genome
Genome

Glucocorticoids and gut bacteria: “The GALF Hypothesis” in the metagenomic era

Morris, D. J. & Ridlon, J. M. Jan 1 2017 In : Steroids. 125, p. 1-13 13 p.

Research output: Contribution to journalReview article

11-beta-Hydroxysteroid Dehydrogenases
Metagenomics
Glucocorticoids
Bacteria
Acids

Go it alone: four-electron oxidations by mononuclear non-heme iron enzymes

Peck, S. C. & van der Donk, W. A. Apr 1 2017 In : Journal of Biological Inorganic Chemistry. 22, 2-3, p. 381-394 14 p.

Research output: Contribution to journalReview article

Iron
Electrons
Oxidation
Enzymes
Biosynthesis

Human milk oligosaccharides influence neonatal mucosal and systemic immunity

Donovan, S. M. & Comstock, S. S. Jan 1 2017 In : Annals of Nutrition and Metabolism. 69, 2, p. 42-51 10 p.

Research output: Contribution to journalReview article

Mucosal Immunity
Human Milk
Oligosaccharides
Infant Formula
Milk