Research Output 1960 2018

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Review article
2017

27-Hydroxycholesterol, an endogenous selective estrogen receptor modulator

He, S. & Nelson, E. R. Oct 1 2017 In : Maturitas. 104, p. 29-35 7 p.

Research output: Contribution to journalReview article

Hydroxycholesterols
Selective Estrogen Receptor Modulators
Estrogen Receptors
Cholesterol
Supravalvular Aortic Stenosis

A New Era of Genome Integration - Simply Cut and Paste!

Liu, Z., Liang, Y., Ang, E. L. & Zhao, H. Apr 21 2017 In : ACS Synthetic Biology. 6, 4, p. 601-609 9 p.

Research output: Contribution to journalReview article

Ointments
Genome
Lutheran Blood-Group System
Homologous Recombination
Cyclic AMP Receptor Protein

Bacteriophage removal efficiency as a validation and operational monitoring tool for virus reduction in wastewater reclamation: Review

Amarasiri, M., Kitajima, M., Nguyen, T. H., Okabe, S. & Sano, D. Sep 15 2017 In : Water Research. 121, p. 258-269 12 p.

Research output: Contribution to journalReview article

Bacteriophages
Viruses
virus
bacteriophage
wastewater

Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids

Yu, Y., Cui, C., Wang, J. & Lu, Y. Feb 1 2017 In : Science China Chemistry. 60, 2, p. 188-200 13 p.

Research output: Contribution to journalReview article

Anthralin
Afferent Loop Syndrome
Electrons

Breaking the silence: new strategies for discovering novel natural products

Ren, H., Wang, B. & Zhao, H. Dec 1 2017 In : Current Opinion in Biotechnology. 48, p. 21-27 7 p.

Research output: Contribution to journalReview article

Biological Products
Genes
Multigene Family
Cyclic AMP Receptor Protein
Throughput

Categorizing Cells on the Basis of their Chemical Profiles: Progress in Single-Cell Mass Spectrometry

Comi, T. J., Do, T. D., Rubakhin, S. S. & Sweedler, J. V. Mar 22 2017 In : Journal of the American Chemical Society. 139, 11, p. 3920-3929 10 p.

Research output: Contribution to journalReview article

Exercise Test
mass spectrometry
Mass spectrometry
Mass Spectrometry
Acyclic Acids

Computational optical coherence tomography [invited]

Liu, Y. Z., South, F. A., Xu, Y., Scott Carney, P. & Boppart, S. A. Mar 1 2017 In : Biomedical Optics Express. 8, 3, p. 1549-1574 26 p.

Research output: Contribution to journalReview article

tomography
Optical Coherence Tomography
imaging techniques
Physics
aberration

Developmental Origins of Hypothalamic Cells Controlling Reproduction

Biehl, M. J. & Raetzman, L. T. Mar 1 2017 In : Seminars in Reproductive Medicine. 35, 2, p. 121-129 9 p.

Research output: Contribution to journalReview article

Hypothalamus
Reproduction
Kisspeptins
Anterior Hypothalamus
Puberty

Dietary fiber and prebiotics and the gastrointestinal microbiota

Holscher, H. D. Mar 4 2017 In : Gut Microbes. 8, 2, p. 172-184 13 p.

Research output: Contribution to journalReview article

Prebiotics
Microbiota
Dietary Fiber
Polysaccharides
Gastrointestinal Tract

DNAzyme sensors for detection of metal ions in the environment and imaging them in living cells

McGhee, C. E., Loh, K. Y. & Lu, Y. Jun 1 2017 In : Current Opinion in Biotechnology. 45, p. 191-201 11 p.

Research output: Contribution to journalReview article

Catalytic DNA
Metals
Ions
Kernicterus
Metal ions

Dynamic Thermal management for aerospace technology: Review and outlook

Doty, J., Yerkes, K., Byrd, L., Murthy, J., Alleyne, A., Wolff, M., Heister, S. & Fisher, T. S. 2017 In : Journal of Thermophysics and Heat Transfer. 31, 1, p. 86-98 13 p.

Research output: Contribution to journalReview article

electric power
energy
aerospace vehicles
chemical energy
propulsion

Engineering biological systems using automated biofoundries

Chao, R., Mishra, S., Si, T. & Zhao, H. Jul 1 2017 In : Metabolic Engineering. 42, p. 98-108 11 p.

Research output: Contribution to journalReview article

Catatonia
Microbial Genetics
Bioengineering
Biotechnology
Technology

Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function

Thor, S., Peterson, J. R. & Luthey-Schulten, Z. 2017 In : Archaea. 2017, 9763848

Research output: Contribution to journalReview article

Archaea
Metabolic Networks and Pathways
Genome
modeling
genetically engineered microorganisms

Glucocorticoids and gut bacteria: “The GALF Hypothesis” in the metagenomic era

Morris, D. J. & Ridlon, J. M. Sep 1 2017 In : Steroids. 125, p. 1-13 13 p.

Research output: Contribution to journalReview article

Metagenomics
Glucocorticoids
Hypertension
Bacteria
Acids

Go it alone: four-electron oxidations by mononuclear non-heme iron enzymes

Peck, S. C. & van der Donk, W. A. Apr 1 2017 In : Journal of Biological Inorganic Chemistry. 22, 2-3, p. 381-394 14 p.

Research output: Contribution to journalReview article

Iron
Electrons
Enzymes
Avian Leukosis
Substrates

Human milk oligosaccharides influence neonatal mucosal and systemic immunity

Donovan, S. M. & Comstock, S. S. Jan 1 2017 In : Annals of Nutrition and Metabolism. 69, 2, p. 42-51 10 p.

Research output: Contribution to journalReview article

Mucosal Immunity
Human Milk
Oligosaccharides
Infant Formula
Milk

Innovative techniques for evaluating behavioral nutrition interventions

Scherr, R. E., Laugero, K. D., Graham, D. J., Cunningham, B. T., Jahns, L., Lora, K. R., Reicks, M. & Mobley, A. R. 2017 In : Advances in Nutrition. 8, 1, p. 113-125 13 p.

Research output: Contribution to journalReview article

methodology
nutritional intervention
Cell Phones
Biosensing Techniques
Carotenoids

Intersections of post-transcriptional gene regulatory mechanisms with intermediary metabolism

Arif, W., Datar, G. & Kalsotra, A. Mar 1 2017 In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1860, 3, p. 349-362 14 p.

Research output: Contribution to journalReview article

Regulator Genes
Enzymes
Metabolism
Cerebellar Ataxia
Blood Flow Velocity

Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression

van Steensel, B. & Belmont, A. S. May 18 2017 In : Cell. 169, 5, p. 780-791 12 p.

Research output: Contribution to journalReview article

Nuclear Lamina
Heterochromatin
Chromosomes
Genes
Cyclic AMP Receptor Protein

Limb development: A paradigm of gene regulation

Petit, F., Sears, K. E. & Ahituv, N. Apr 1 2017 In : Nature Reviews Genetics. 18, 4, p. 245-258 14 p.

Research output: Contribution to journalReview article

Extremities
Genes
Developmental Biology
Systems Biology
Forelimb

Long-term evolution of viruses: A Janus-faced balance

Nasir, A., Kim, K. M. & Caetano-Anollés, G. Aug 1 2017 In : BioEssays. 39, 8, 1700026

Research output: Contribution to journalReview article

Viruses
Bulimia
Virus Latency
Symbiosis
Metagenomics

Mechanisms of gene flow in archaea

Wagner, A., Whitaker, R. J., Krause, D. J., Heilers, J. H., Van Wolferen, M., Van Der Does, C. & Albers, S. V. Aug 1 2017 In : Nature Reviews Microbiology. 15, 8, p. 492-501 10 p.

Research output: Contribution to journalReview article

Gene Flow
Archaea
Genes
Archaeal DNA
Horizontal Gene Transfer

Mimivirus: Leading the way in the discovery of giant viruses of amoebae

Colson, P., La Scola, B., Levasseur, A., Caetano-Anollés, G. & Raoult, D. Mar 13 2017 In : Nature Reviews Microbiology. 15, 4, p. 243-254 12 p.

Research output: Contribution to journalReview article

Mimiviridae
Amoeba
Viruses
Virus Internalization
Virology

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Bowers, R. M. , Kyrpides, N. C. , Stepanauskas, R. , Harmon-Smith, M. , Doud, D. , Reddy, T. B. K. , Schulz, F. , Jarett, J. , Rivers, A. R. , Eloe-Fadrosh, E. A. , Tringe, S. G. , Ivanova, N. N. , Copeland, A. , Clum, A. , Becraft, E. D. , Malmstrom, R. R. , Birren, B. , Podar, M. , Bork, P. , Weinstock, G. M. & 35 others Garrity, G. M., Dodsworth, J. A., Yooseph, S., Sutton, G., Glöckner, F. O., Gilbert, J. A., Nelson, W. C., Hallam, S. J., Jungbluth, S. P., Ettema, T. J. G., Tighe, S., Konstantinidis, K. T., Liu, W. T., Baker, B. J., Rattei, T., Eisen, J. A., Hedlund, B., McMahon, K. D., Fierer, N., Knight, R., Finn, R., Cochrane, G., Karsch-Mizrachi, I., Tyson, G. W., Rinke, C., Lapidus, A., Meyer, F., Yilmaz, P., Parks, D. H., Eren, A. M., Schriml, L., Banfield, J. F., Hugenholtz, P., Woyke, T. & The Genome Standards Consortium Aug 8 2017 In : Nature Biotechnology. 35, 8, p. 725-731 7 p.

Research output: Contribution to journalReview article

Metagenome
Archaea
Genome
Bacteria
Cyclic AMP Receptor Protein

Modification of the Genome of Domestic Animals

Lotti, S. N., Polkoff, K. M., Rubessa, M. & Wheeler, M. B. Jul 3 2017 In : Animal Biotechnology. 28, 3, p. 198-210 13 p.

Research output: Contribution to journalReview article

methodology
Domestic Animals
Genome
Genes
Porphobilinogen Synthase

Myotonic dystrophy: disease repeat range, penetrance, age of onset, and relationship between repeat size and phenotypes

Yum, K., Wang, E. T. & Kalsotra, A. Jun 1 2017 In : Current Opinion in Genetics and Development. 44, p. 30-37 8 p.

Research output: Contribution to journalReview article

Myotonic Dystrophy
Penetrance
Genetic Testing
Age of Onset
Phenotype

Photonic crystals: Emerging biosensors and their promise for point-of-care applications

Inan, H., Poyraz, M., Inci, F., Lifson, M. A., Baday, M., Cunningham, B. T. & Demirci, U. Jan 21 2017 In : Chemical Society Reviews. 46, 2, p. 366-388 23 p.

Research output: Contribution to journalReview article

Biosensors
Photonic crystals
Acyclic Acids
Supravalvular Aortic Stenosis
beta-Amylase

Potential impacts of changing supply-water quality on drinking water distribution: A review

Liu, G., Zhang, Y., Knibbe, W. J., Feng, C., Liu, W., Medema, G. & van der Meer, W. Jun 1 2017 In : Water Research. 116, p. 135-148 14 p.

Research output: Contribution to journalReview article

Water quality
water quality
water
Water
Pipe

Potential of global croplands and bioenergy crops for climate change mitigation through deployment for enhanced weathering

Kantola, I. B., Masters, M. D., Beerling, D. J., Long, S. P. & DeLucia, E. H. Apr 1 2017 In : Biology Letters. 13, 4, 0714

Research output: Contribution to journalReview article

weathering
Climate Change
Soil
Food
energy crops

Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: A review and perspective

Kwak, S. & Jin, Y. S. May 11 2017 In : Microbial Cell Factories. 16, 1, 82

Research output: Contribution to journalReview article

Xylose
Saccharomyces cerevisiae
HLA Antigens
Yeast
Yeasts

Recent advances in DNAzyme-based gene silencing

Fan, H., Zhang, X. & Lu, Y. May 1 2017 In : Science China Chemistry. 60, 5, p. 591-601 11 p.

Research output: Contribution to journalReview article

Bibliography of Medicine
Cyclic AMP Receptor Protein
Fusobacterium
Inborn Errors Amino Acid Metabolism
Afferent Loop Syndrome

Review of cellular mechanotransduction

Wang, N. May 17 2017 In : Journal of Physics D: Applied Physics. 50, 23, 233002

Research output: Contribution to journalReview article

Library Catalogs
Castration
Gene expression
Cells
Tissue

Ribosomally synthesized and post-translationally modified peptide natural product discovery in the genomic era

Hetrick, K. J. & van der Donk, W. A. Jun 1 2017 In : Current Opinion in Chemical Biology. 38, p. 36-44 9 p.

Research output: Contribution to journalReview article

Biological Products
Genome
Peptides
Cyclic AMP Receptor Protein
Bacterial Genomes

RNA modifications and structures cooperate to guide RNA-protein interactions

Lewis, C. J. T., Pan, T. & Kalsotra, A. Mar 1 2017 In : Nature Reviews Molecular Cell Biology. 18, 3, p. 202-210 9 p.

Research output: Contribution to journalReview article

Guide RNA
RNA
Proteins
Transcriptome
Gene Expression

Rooting for cassava: insights into photosynthesis and associated physiology as a route to improve yield potential

De Souza, A. P., Massenburg, L. N., Jaiswal, D., Cheng, S., Shekar, R. & Long, S. P. Jan 1 2017 In : New Phytologist. 213, 1, p. 50-65 16 p.

Research output: Contribution to journalReview article

cassava
Manihot
Photosynthesis
photosynthetically active radiation
genetic improvement

The "ok, molly" chemistry

Lu, Y. 2017 In : Accounts of Chemical Research. 50, 3, p. 647-651 5 p.

Research output: Contribution to journalReview article

Bile Pigments
Poecilia
Education
Caprylates

The role of early life nutrition in the establishment of gastrointestinal microbial composition and function

Davis, E. C., Wang, M. & Donovan, S. M. Mar 4 2017 In : Gut Microbes. 8, 2, p. 143-171 29 p.

Research output: Contribution to journalReview article

Microbiota
Dysbiosis
Prebiotics
Infant Formula
Probiotics

Using natural products for drug discovery: the impact of the genomics era

Zhang, M. M., Qiao, Y., Ang, E. L. & Zhao, H. May 4 2017 In : Expert Opinion on Drug Discovery. 12, 5, p. 475-487 13 p.

Research output: Contribution to journalReview article

Drug Discovery
Genomics
Biological Products
Synthetic Biology
Metagenomics

YcaO-Dependent Posttranslational Amide Activation: Biosynthesis, Structure, and Function

Burkhart, B. J., Schwalen, C. J., Mann, G., Naismith, J. H. & Mitchell, D. A. Apr 26 2017 In : Chemical Reviews. 117, 8, p. 5389-5456 68 p.

Research output: Contribution to journalReview article

Nylidrin
Biosynthesis
Acyclic Acids
Paranasal Sinus Neoplasms
Cape Verde
2016

Accelerated genome engineering through multiplexing

Bao, Z., Cobb, R. E. & Zhao, H. Jan 1 2016 In : Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 8, 1, p. 5-21 17 p.

Research output: Contribution to journalReview article

Cyclic AMP Receptor Protein
Genome
Bioengineering
Biological Science Disciplines
Oligonucleotides

A comprehensive empirical study of data privacy, trust, and consumer autonomy

Kesan, J. P., Hayes, C. M. & Bashir, M. N. 2016 In : Indiana Law Journal. 91, 2, p. 267-352 86 p.

Research output: Contribution to journalReview article

consumer
data
government
survey
people

ACS Catalysis and the Scope of Papers Sought in Three Catalysis Subdisciplines: Biocatalysis and Enzymology, Molecular Catalysis for Organic Synthesis, and Heterogeneous Photocatalysis

Chang, S., Fornasiero, P., Gunnoe, T. B., Jones, C. W., Linic, S., Ooi, T., Williams, R. M. & Zhao, H. Jul 1 2016 In : ACS Catalysis. 6, 7, p. 4782-4785 4 p.

Research output: Contribution to journalReview article

Catalysis

Analytical capabilities of mass spectrometry imaging and its potential applications in food science

Li, B., Dunham, S. J. B., Dong, Y., Yoon, S., Zeng, M. & Sweedler, J. V. Jan 1 2016 In : Trends in Food Science and Technology. 47, p. 50-63 14 p.

Research output: Contribution to journalReview article

Food Technology
Mass Spectrometry
Food
image analysis
mass spectrometry

Arguments Reinforcing the Three-Domain View of Diversified Cellular Life

Nasir, A., Kim, K. M., Da Cunha, V. & Caetano-Anollés, G. 2016 In : Archaea. 2016, 1851865

Research output: Contribution to journalReview article

Eukaryota
ancestry
protein
Phylogeny
Tertiary Protein Structure

Biochemical and biophysical understanding of metal ion selectivity of DNAzymes

Hwang, K., Hosseinzadeh, P. & Lu, Y. 2016 In : Inorganica Chimica Acta. 452, p. 12-24 13 p.

Research output: Contribution to journalReview article

Kernicterus
Metal ions
metal ions
Caprylates
Structural properties

Cameo appearances of aminoacyl-tRNA in natural product biosynthesis

Ulrich, E. C. & van der Donk, W. A. Dec 1 2016 In : Current Opinion in Chemical Biology. 35, p. 29-36 8 p.

Research output: Contribution to journalReview article

Transfer RNA
Biological Products
Biosynthesis
Enzymes
Cyclic AMP Receptor Protein

Candida albicans agglutinin-like sequence (Als) family vignettes: A review of als protein structure and function

Hoyer, L. L. & Cota, E. Mar 15 2016 In : Frontiers in Microbiology. 7, MAR, 280

Research output: Contribution to journalReview article

Agglutinins
Candida albicans
Proteins
Membrane Glycoproteins
Adhesives

Consequences of bile salt biotransformations by intestinal bacteria

Ridlon, J. M., Harris, S. C., Bhowmik, S., Kang, D. J. & Hylemon, P. B. Jan 2 2016 In : Gut Microbes. 7, 1, p. 22-39 18 p.

Research output: Contribution to journalReview article

Biotransformation
Bile Acids and Salts
Bacteria
Microbiota
Food

Creation of an NCI comparative brain tumor consortium: Informing the translation of new knowledge from canine to human brain tumor patients

Leblanc, A. K. , Mazcko, C. , Brown, D. E. , Koehler, J. W. , Miller, A. D. , Miller, C. R. , Bentley, R. T. , Packer, R. A. , Breen, M. , Boudreau, C. E. , Levine, J. M. , Simpson, R. M. , Halsey, C. , Kisseberth, W. , Rossmeisl, J. H. , Dickinson, P. J. , Fan, T. M. , Corps, K. , Aldape, K. , Puduvalli, V. & 2 others Pluhar, G. E. & Gilbert, M. R. Sep 1 2016 In : Neuro-Oncology. 18, 9, p. 1209-1218 10 p.

Research output: Contribution to journalReview article

Translational Medical Research
Brain Neoplasms
Canidae
National Institutes of Health (U.S.)
Glioma

Creative lysins: Listeria and the engineering of antimicrobial enzymes

Van Tassell, M. L., Angela Daum, M., Kim, J. S. & Miller, M. J. Feb 1 2016 In : Current Opinion in Biotechnology. 37, p. 88-96 9 p.

Research output: Contribution to journalReview article

Listeria
Biotechnology
Enzymes
Proteins
Protein Engineering