Research Output 1971 2019

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Review article
2018

3D printing for preoperative planning and surgical training: a review

Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J., Kesavadas, T. & Bashir, R., Sep 1 2018, In : Biomedical Microdevices. 20, 3, 65.

Research output: Contribution to journalReview article

Printing
Audiovisual Aids
Planning
Diagnostic Imaging
Human Body

A framework for enhancing ethical genomic research with Indigenous communities

Summer internship for INdigenous peoples in Genomics (SING) Consortium, Dec 1 2018, In : Nature Communications. 9, 1, 2957.

Research output: Contribution to journalReview article

health
Research
inclusions
magnetic permeability
Health

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & Delucia, E. H., Jan 15 2018, In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journalReview article

alley cropping
species diversity
crop
crops
fodder

A new era for electron bifurcation

Peters, J. W., Beratan, D. N., Bothner, B., Dyer, R. B., Harwood, C. S., Heiden, Z. M., Hille, R., Jones, A. K., King, P. W., Lu, Y., Lubner, C. E., Minteer, S. D., Mulder, D. W., Raugei, S., Schut, G. J., Seefeldt, L. C., Tokmina-Lukaszewska, M., Zadvornyy, O. A., Zhang, P. & Adams, M. WW., Dec 1 2018, In : Current Opinion in Chemical Biology. 47, p. 32-38 7 p.

Research output: Contribution to journalReview article

Electrons
Biochemical Phenomena
Anaerobiosis
Electron Transport Complex III
Redox reactions

Applications of power ultrasound in oriented modification and degradation of pectin: A review

Wang, W., Chen, W., Zou, M., Lv, R., Wang, D., Hou, F., Feng, H., Ma, X., Zhong, J., Ding, T., Ye, X. & Liu, D., Oct 1 2018, In : Journal of Food Engineering. 234, p. 98-107 10 p.

Research output: Contribution to journalReview article

pectins
degradation
Technology
sustainable technology
functional properties

Archaea-First and the Co-Evolutionary Diversification of Domains of Life

Staley, J. T. & Caetano-Anolles, G., Aug 1 2018, In : BioEssays. 40, 8, 1800036.

Research output: Contribution to journalReview article

Archaea
Bacteria
Cells
Eukaryota
Methane

Avian prenatal auditory stimulation: progress and perspectives

Rivera, M., Louder, M. I. M., Kleindorfer, S., Liu, W. C. & Hauber, M. E., Jul 1 2018, In : Behavioral Ecology and Sociobiology. 72, 7, 112.

Research output: Contribution to journalReview article

acoustics
embryo
embryo (animal)
bird
birds

Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates

Sun, H., Zhang, H., Ang, E. L. & Zhao, H., Apr 1 2018, In : Bioorganic and Medicinal Chemistry. 26, 7, p. 1275-1284 10 p.

Research output: Contribution to journalReview article

Biocatalysis
Enzymes
Pharmaceutical Preparations
Oxidoreductases
Protein Engineering

Bioengineered Liver Models for Drug Testing and Cell Differentiation Studies

Underhill, G. H. & Khetani, S. R., Mar 1 2018, In : CMGH. 5, 3, p. 426-439.e1

Research output: Contribution to journalReview article

Cell Differentiation
Liver
Pharmaceutical Preparations
Hepatocytes
Cell- and Tissue-Based Therapy

Bone regeneration strategies: Engineered scaffolds, bioactive molecules and stem cells current stage and future perspectives

Ho-Shui-Ling, A., Bolander, J., Rustom, L. E., Wagoner Johnson, A. J., Luyten, F. P. & Picart, C., Oct 1 2018, In : Biomaterials. 180, p. 143-162 20 p.

Research output: Contribution to journalReview article

Bone Substitutes
Bone Regeneration
Stem cells
Scaffolds
Bone

CAMP, Ca2+, pHi, and NO Regulate H-like Cation Channels That Underlie Feeding and Locomotion in the Predatory Sea Slug Pleurobranchaea californica

Green, D. J., Huang, R. C., Sudlow, L., Hatcher, N., Potgieter, K., McCrohan, C., Lee, C., Romanova, E. V., Sweedler, J. V., Gillette, M. L. & Gillette, R., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 1986-1993 8 p.

Research output: Contribution to journalReview article

Pleurobranchaea
Gastropoda
Locomotion
Nitric Oxide Synthase
Oceans and Seas

Causes and Consequences of Spatial Within-Host Viral Spread

Gallagher, M. E., Brooke, C. B., Ke, R. & Koelle, K., Nov 13 2018, In : Viruses. 10, 11

Research output: Contribution to journalReview article

Influenza A virus
Population Genetics
Population Dynamics
Virion
Respiratory System

Circadian redox rhythms in the regulation of neuronal excitability

Bothwell, M. Y. & Gillette, M. L., May 1 2018, In : Free Radical Biology and Medicine. 119, p. 45-55 11 p.

Research output: Contribution to journalReview article

Circadian Rhythm
Oxidation-Reduction
Suprachiasmatic Nucleus
Membranes
Ion Channels

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C., Cerri, C. E. P., Ceulemans, R., Davies, C. A., Delucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P., Mar 1 2018, In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

energy crops
bioenergy
Land use
Crops
Greenhouse gases

Correlates and Consequences of Worker Polymorphism in Ants

Wills, B. D., Powell, S., Rivera, M. D. & Suarez, A., Jan 7 2018, In : Annual Review of Entomology. 63, p. 575-598 24 p.

Research output: Contribution to journalReview article

polymorphism
ant
body size
Formicidae
life history trait

CryoEM-based hybrid modeling approaches for structure determination

Cassidy, C. K., Himes, B. A., Luthey-Schulten, Z. A. & Zhang, P., Jun 1 2018, In : Current Opinion in Microbiology. 43, p. 14-23 10 p.

Research output: Contribution to journalReview article

Cryoelectron Microscopy

Current evidence allows multiple models for the peopling of the Americas

Potter, B. A., Baichtal, J. F., Beaudoin, A. B., Fehren-Schmitz, L., Haynes, C. V., Holliday, V. T., Holmes, C. E., Ives, J. W., Kelly, R. L., Llamas, B., Malhi, R. S., Miller, D. S., Reich, D., Reuther, J. D., Schiffels, S. & Surovell, T. A., Aug 8 2018, In : Science Advances. 4, 8, eaat5473.

Research output: Contribution to journalReview article

ice free corridor
geomorphology
strait
colonization
ice

Current technologies of electrochemical immunosensors: Perspective on signal amplification

Cho, I. H., Lee, J., Kim, J., Kang, M. S., Paik, J. K., Ku, S., Cho, H. M., Irudayaraj, J. M. K. & Kim, D. H., Jan 12 2018, In : Sensors (Switzerland). 18, 1, 207.

Research output: Contribution to journalReview article

Immunosensors
Nanostructures
Biosensing Techniques
Nanostructured materials
Biosensors

Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L. & Cunningham, B. T., Jun 1 2018, In : Chemosensors. 6, 2, 13.

Research output: Contribution to journalReview article

Optical resonators
optical resonators
counting
Nanoparticles
nanoparticles

Earth BioGenome Project: Sequencing life for the future of life

Lewin, H. A., Robinson, G. E., Kress, W. J., Baker, W. J., Coddington, J., Crandall, K. A., Durbin, R., Edwards, S. V., Forest, F., Gilbert, M. T. P., Goldstein, M. M., Grigoriev, I. V., Hackett, K. J., Haussler, D., Jarvis, E. D., Johnson, W. E., Patrinos, A., Richards, S., Castilla-Rubio, J. C., Van Sluys, M. A. & 4 othersSoltis, P. S., Xu, X., Yang, H. & Zhang, G., Apr 24 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. 4325-4333 9 p.

Research output: Contribution to journalReview article

Biodiversity
Ecosystem
Planets
Endangered Species
Information Dissemination

Editorial: Building strategies for porcine cancer models

Collares, T., Seixas, F. K., Rund, L. A. & Schook, L. B., Oct 2 2018, In : Frontiers in Genetics. 9, OCT, 377.

Research output: Contribution to journalReview article

Swine
Neoplasms

Engineering Polymersomes for Diagnostics and Therapy

Leong, J., Teo, J. Y., Aakalu, V. K., Yang, Y. Y. & Kong, H. J., Apr 25 2018, In : Advanced Healthcare Materials. 7, 8, 1701276.

Research output: Contribution to journalReview article

Imaging techniques
Molecules
Controllability
Pharmaceutical Preparations
Self assembly

Engineering the Surface of Therapeutic "living" Cells

Park, J., Andrade, B., Seo, Y., Kim, M. J., Zimmerman, S. C. & Kong, H. J., Feb 28 2018, In : Chemical reviews. 118, 4, p. 1664-1690 27 p.

Research output: Contribution to journalReview article

Cell engineering
Drug Carriers
Adhesion
Tissue
Nanoparticles

Escapement mechanisms and the conversion of disequilibria; the engines of creation

Branscomb, E., Biancalani, T., Goldenfeld, N. & Russell, M., Mar 17 2018, In : Physics Reports. 677, p. 1-60 60 p.

Research output: Contribution to journalReview article

engines
cascades
free energy
energy
causes
Biocatalysis
Enzymes
Synthetic Biology
Metabolic engineering
Metabolic Engineering

Fatigue behavior of high-entropy alloys: A review

Chen, P. Y., Lee, C., Wang, S. Y., Seifi, M., Lewandowski, J. J., Dahmen, K. A., Jia, H. L., Xie, X., Chen, B. L., Yeh, J. W., Tsai, C. W., Yuan, T. & Liaw, P. K., Feb 1 2018, In : Science China Technological Sciences. 61, 2, p. 168-178 11 p.

Research output: Contribution to journalReview article

Entropy
Fatigue of materials
Fatigue crack propagation
Bending (deformation)
Solid solutions
eusociality
plasticity
Insects
insect
Phenotype

Genomic Approaches to Posttraumatic Stress Disorder: The Psychiatric Genomic Consortium Initiative

Nievergelt, C. M., Ashley-Koch, A. E., Dalvie, S., Hauser, M. A., Morey, R. A., Smith, A. K. & Uddin, E. M., May 15 2018, In : Biological Psychiatry. 83, 10, p. 831-839 9 p.

Research output: Contribution to journalReview article

Post-Traumatic Stress Disorders
Psychiatry
Genome-Wide Association Study
Genomics
Physiological Sexual Dysfunctions

Genomic tools for behavioural ecologists to understand repeatable individual differences in behaviour

Bengston, S. E., Dahan, R. A., Donaldson, Z., Phelps, S. M., Van Oers, K., Sih, A. & Bell, A. M., Jun 1 2018, In : Nature Ecology and Evolution. 2, 6, p. 944-955 12 p.

Research output: Contribution to journalReview article

ecologists
genomics
animal
animals
individual variation

Host defences against avian brood parasitism: An endocrine perspective

Abolins-Abols, M. & Hauber, M. E., Sep 12 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1886, 20180980.

Research output: Contribution to journalReview article

brood parasitism
Antiparasitic Agents
Parasites
parasite
arms race

How many human proteoforms are there?

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., Ge, Y., Gunawardena, J., Hendrickson, R. C., Hergenrother, P., Huber, C. G., Ivanov, A. R., Jensen, O. N., Jewett, M. C., Kelleher, N. L., Kiessling, L. L. & 33 othersKrogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., Maccoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T., Wysocki, V. H., Yates, N. A., Young, N. L. & Zhang, B., Feb 14 2018, In : Nature chemical biology. 14, 3, p. 206-214 9 p.

Research output: Contribution to journalReview article

Post Translational Protein Processing
Proteins
Proteome
Proteomics
Amino Acid Sequence

Innovations in CRISPR technology

Brooks, A. K. & Gaj, T., Aug 1 2018, In : Current Opinion in Biotechnology. 52, p. 95-101 7 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Innovation
Technology
Genes
Gene therapy

Microbiome-mediated effects of the Mediterranean diet on inflammation

Bailey, M. A. & Holscher, H. D., May 1 2018, In : Advances in Nutrition. 9, 3, p. 93-206 114 p.

Research output: Contribution to journalReview article

Mediterranean Diet
endotoxemia
Mediterranean diet
Endotoxemia
Microbiota

Nanodiscs: A Controlled Bilayer Surface for the Study of Membrane Proteins

McLean, M. A., Gregory, M. C. & Sligar, S. G., May 20 2018, In : Annual Review of Biophysics. 47, p. 107-124 18 p.

Research output: Contribution to journalReview article

Membrane Proteins
Proteins
Membranes
Lipids
Multiprotein Complexes

Phloem function: a key to understanding and manipulating plant responses to rising atmospheric [CO2]?

Ainsworth, E. & Lemonnier, P., Jun 1 2018, In : Current opinion in plant biology. 43, p. 50-56 7 p.

Research output: Contribution to journalReview article

phloem
plant response
carbon dioxide
phloem loading
sucrose

Plasmonic nano-arrays for ultrasensitive bio-sensing

Jiang, J., Wang, X., Li, S., Ding, F., Li, N., Meng, S., Li, R., Qi, J., Liu, Q. & Liu, G. L., Jan 1 2018, In : Nanophotonics. 7, 9, p. 1517-1531 15 p.

Research output: Contribution to journalReview article

Surface Plasmon Resonance
Surface plasmon resonance
surface plasmon resonance
Sensor arrays
Point-of-Care Systems

Point-of-care sensors for the management of sepsis

Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In : Nature Biomedical Engineering. 2, 9, p. 640-648 9 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Sepsis
Health
Sensors
Infection

Potential lymphangiogenesis therapies: Learning from current antiangiogenesis therapies—A review

Yamakawa, M., Doh, S. J., Santosa, S. M., Montana, M., Qin, E. C., Kong, H. J., Han, K. Y., Yu, C., Rosenblatt, M. I., Kazlauskas, A., Chang, J. H. & Azar, D. T., Nov 1 2018, In : Medicinal Research Reviews. 38, 6, p. 1769-1798 30 p.

Research output: Contribution to journalReview article

Lymphangiogenesis
Learning
Pharmaceutical Preparations
Vascular Endothelial Growth Factor C
Nanotechnology

Preface: Valedictory from a Gadfly Grammarian

Berenbaum, M. R., Jan 7 2018, In : Annual Review of Entomology. 63, p. v-ix

Research output: Contribution to journalReview article

P-TEFb: Finding its ways to release promoter-proximally paused RNA polymerase II

Li, Y., Liu, M., Chen, L-F. & Chen, R., Mar 15 2018, In : Transcription. 9, 2, p. 88-94 7 p.

Research output: Contribution to journalReview article

Positive Transcriptional Elongation Factor B
RNA Polymerase II
Small Nuclear Ribonucleoproteins
Genetic Promoter Regions
Genes

Recent developments in the application of P450 based biocatalysts

Wei, Y., Ang, E. L. & Zhao, H., Apr 1 2018, In : Current Opinion in Chemical Biology. 43, p. 1-7 7 p.

Research output: Contribution to journalReview article

Mixed Function Oxygenases
Enzymes
Biosynthesis
Biological Products
Cytochrome P-450 Enzyme System

Review: The epic journey of sperm through the female reproductive tract

Miller, D. J., Jun 1 2018, In : Animal. 12, s1, p. s110-s120

Research output: Contribution to journalReview article

spermatozoa
fertilization (reproduction)
oviducts
oocytes
natural mating

Revisiting paradigms of Ca2+ signaling protein kinase regulation in plants

Bender, K. W., Zielinski, R. E. & Huber, S. C., Jan 15 2018, In : Biochemical Journal. 475, 1, p. 207-223 17 p.

Research output: Contribution to journalReview article

Protein Kinases
Chemical activation
Calcineurin
Sensors
Phosphotransferases

RiPP antibiotics: biosynthesis and engineering potential

Hudson, G. A. & Mitchell, D. A., Oct 1 2018, In : Current Opinion in Microbiology. 45, p. 61-69 9 p.

Research output: Contribution to journalReview article

Anti-Bacterial Agents
Biosynthetic Pathways
Biological Products
Peptide Synthases
Synthetic Biology

Secondary structures in synthetic polypeptides from N-carboxyanhydrides: design, modulation, association, and material applications

Song, Z., Fu, H., Wang, R., Pacheco, L. A., Wang, X., Lin, Y. & Cheng, J., Oct 7 2018, In : Chemical Society Reviews. 47, 19, p. 7401-7425 25 p.

Research output: Contribution to journalReview article

Modulation
Association reactions
Peptides
Conformations
Polymers

Sequence-specific control of inorganic nanomaterials morphologies by biomolecules

Wang, Y., Reddy Satyavolu, N. S. & Lu, Y., Nov 1 2018, In : Current Opinion in Colloid and Interface Science. 38, p. 158-169 12 p.

Research output: Contribution to journalReview article

Biomolecules
Nanostructured materials
synthesis
Peptides
peptides

Simulating biological processes: Stochastic physics from whole cells to colonies

Earnest, T. M., Cole, J. A. & Luthey-Schulten, Z. A., Apr 5 2018, In : Reports on Progress in Physics. 81, 5, 052601.

Research output: Contribution to journalReview article

stochastic processes
physics
cells
biological evolution
ribosomes

Single Cell Neurometabolomics

Qi, M., Philip, M. C., Yang, N. & Sweedler, J. V., Jan 17 2018, In : ACS Chemical Neuroscience. 9, 1, p. 40-50 11 p.

Research output: Contribution to journalReview article

Metabolomics
Brain
Molecules
Biological systems
Nutrition
Food and Beverages
Pediatric Obesity
state law
childhood
food

The Molecular Industrial Revolution: Automated Synthesis of Small Molecules

Trobe, M. & Burke, M., Apr 9 2018, In : Angewandte Chemie - International Edition. 57, 16, p. 4192-4214 23 p.

Research output: Contribution to journalReview article

3D printers
Automation
Molecules
Innovation
Direction compound