Research Output 1972 2019

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Letter
2019
Open Access
subjectivity
Diet
Pacific Northwest Coast
Subjectivity

Increasing Diversity in Evolutionary Anthropological Sciences—the IDEAS Program

Malhi, R. S., Antón, S. C. & Fuentes, A., May 1 2019, In : American Anthropologist. 121, 2, p. 478-479 2 p.

Research output: Contribution to journalLetter

Open Access
science
Evolutionary

Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows

Shah, N., Nute, M. G., Warnow, T. & Pop, M., May 1 2019, In : Bioinformatics. 35, 9, p. 1613-1614 2 p.

Research output: Contribution to journalLetter

Workflow
Bioinformatics
Computational Biology
Work Flow
Correctness

Phenotyping photosynthesis on the limit - a critical examination of RACiR

Taylor, S. H. & Long, S. P., Jan 1 2019, In : The New phytologist. 221, 2, p. 621-624 4 p.

Research output: Contribution to journalLetter

Open Access
Ribulose-Bisphosphate Carboxylase
Photosynthesis
ribulose-bisphosphate carboxylase
global change
photosynthesis

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

ethanol

Reply to: fMRI replicability depends upon sufficient individual-level data

Turner, B. O., Santander, T., Paul, E. J., Barbey, A. K. & Miller, M. B., Dec 1 2019, In : Communications Biology. 2, 1, 129.

Research output: Contribution to journalLetter

Open Access
Magnetic Resonance Imaging

Small-molecule ion channels increase host defences in cystic fibrosis airway epithelia

Muraglia, K. A., Chorghade, R. S., Kim, B. R., Tang, X. X., Shah, V. S., Grillo, A. S., Daniels, P. N., Cioffi, A. G., Karp, P. H., Zhu, L., Welsh, M. J. & Burke, M., Mar 21 2019, In : Nature. 567, 7748, p. 405-408 4 p.

Research output: Contribution to journalLetter

Cystic Fibrosis Transmembrane Conductance Regulator
Ion Channels
Cystic Fibrosis
Amphotericin B
Epithelium
2018

Ancient herders enriched and restructured African grasslands

Marshall, F., Reid, R. E. B., Goldstein, S., Storozum, M., Wreschnig, A., Hu, L., Kiura, P., Shahack-Gross, R. & Ambrose, S. H., Sep 20 2018, In : Nature. 561, 7723, p. 387-390 4 p.

Research output: Contribution to journalLetter

Soil
Food
Ecosystem
Isoptera
Livestock

Arrival routes of first Americans uncertain

Potter, B. A., Beaudoin, A. B., Haynes, C. V., Holliday, V. T., Holmes, C. E., Ives, J. W., Kelly, R., Llamas, B., Malhi, R. S., Miller, S., Reich, D., Reuther, J. D., Schiffels, S. & Surovell, T., Mar 16 2018, In : Science. 359, 6381, p. 1224-1225 2 p.

Research output: Contribution to journalLetter

Cooperative asymmetric reactions combining photocatalysis and enzymatic catalysis

Litman, Z. C., Wang, Y., Zhao, H. & Hartwig, J. F., Aug 16 2018, In : Nature. 560, 7718, p. 355-359 5 p.

Research output: Contribution to journalLetter

Alkenes
Catalysis
Regeneration
Stereoisomerism
Enzymes

KBase: The United States department of energy systems biology knowledgebase

Arkin, A. P., Cottingham, R. W., Henry, C. S., Harris, N. L., Stevens, R. L., Maslov, S., Dehal, P., Ware, D., Perez, F., Canon, S., Sneddon, M. W., Henderson, M. L., Riehl, W. J., Murphy-Olson, D., Chan, S. Y., Kamimura, R. T., Kumari, S., Drake, M. M., Brettin, T. S., Glass, E. M. & 61 others, Chivian, D., Gunter, D., Weston, D. J., Allen, B. H., Baumohl, J., Best, A. A., Bowen, B., Brenner, S. E., Bun, C. C., Chandonia, J. M., Chia, J. M., Colasanti, R., Conrad, N., Davis, J. J., Davison, B. H., Dejongh, M., Devoid, S., Dietrich, E., Dubchak, I., Edirisinghe, J. N., Fang, G., Faria, J. P., Frybarger, P. M., Gerlach, W., Gerstein, M., Greiner, A., Gurtowski, J., Haun, H. L., He, F., Jain, R., Joachimiak, M. P., Keegan, K. P., Kondo, S., Kumar, V., Land, M. L., Meyer, F., Mills, M., Novichkov, P. S., Oh, T., Olsen, G. J., Olson, R., Parrello, B., Pasternak, S., Pearson, E., Poon, S. S., Price, G. A., Ramakrishnan, S., Ranjan, P., Ronald, P. C., Schatz, M. C., Seaver, S. M. D., Shukla, M., Sutormin, R. A., Syed, M. H., Thomason, J., Tintle, N. L., Wang, D., Xia, F., Yoo, H., Yoo, S. & Yu, D., Jul 6 2018, In : Nature Biotechnology. 36, 7, p. 566-569 4 p.

Research output: Contribution to journalLetter

Systems Biology

Order and polarity in character state transformation models that root the tree of life

Caetano-Anollés, K., Caetano-Anollés, D., Nasir, A., Kim, K. M. & Caetano-Anolles, G., Jun 1 2018, In : Biochimie. 149, p. 135-136 2 p.

Research output: Contribution to journalLetter

Translucent windows: how uncertainty in competitive interactions impacts detection of community pattern

D'Andrea, R., Ostling, A. & O'Dwyer, J. P., Jun 1 2018, In : Ecology Letters. 21, 6, p. 826-835 10 p.

Research output: Contribution to journalLetter

niche
niches
uncertainty
interspecific competition
natural history
2017

HM2-phage resistant solventogenic Clostridium saccharoperbutylacetonicum N1-4 shows increased exopolysaccharide production

Liu, X., Turchi, B., Mok, K. C., Taga, M. E. & Miller, M. J., Oct 1 2017, In : FEMS Microbiology Letters. 364, 19, fnx191.

Research output: Contribution to journalLetter

Clostridium
Bacteriophages
Fermentation
Adsorption
Genome Size

PacBio Sequencing Reveals Transposable Elements as a Key Contributor to Genomic Plasticity and Virulence Variation in Magnaporthe oryzae

Bao, J., Chen, M., Zhong, Z., Tang, W., Lin, L., Zhang, X., Jiang, H., Zhang, D., Miao, C., Tang, H., Zhang, J., Lu, G., Ming, R. R., Norvienyeku, J., Wang, B. & Wang, Z., Nov 6 2017, In : Molecular Plant. 10, 11, p. 1465-1468 4 p.

Research output: Contribution to journalLetter

Magnaporthe
Magnaporthe oryzae
DNA Transposable Elements
transposons
Virulence
2015
Peptidyl Transferases
ribosomes
Ribosomes
transferases
accretion

Anthropological Genetics

Kitchen, A., Non, A. L., Gravlee, C. C., Mulligan, C. J., Warinner, C., Lewis, C. M., Bankoff, R. J., Randrianatoandro, H. D. D., Perry, G. H., Malhi, R. S., Bader, A. C. & Raff, J., Dec 1 2015, In : American Anthropologist. 117, 4, p. 736-737 2 p.

Research output: Contribution to journalLetter

Engaging Native Americans in Genomics Research

Malhi, R. S. & Bader, A. C., Dec 1 2015, In : American Anthropologist. 117, 4, p. 743-744 2 p.

Research output: Contribution to journalLetter

Native Americans

Relocation risky for bumblebee colonies

Lozier, J. D., Cameron, S. A., Duennes, M. A., Strange, J. P., Williams, P. H., Goulson, D., Brown, M. J. F., Morales, C. & Jepsen, S., Oct 16 2015, In : Science. 350, 6258, p. 286-287 2 p.

Research output: Contribution to journalLetter

The rs1049353 polymorphism in the CNR1 gene interacts with childhood abuse to predict posttraumatic threat symptoms

Mota, N., Sumner, J. A., Lowe, S. R., Neumeister, A., Uddin, E. M., Aiello, A. E., Wildman, D., Galea, S., Koenen, K. C. & Pietrzak, R. H., Dec 1 2015, In : Journal of Clinical Psychiatry. 76, 12, p. e1622-e1623

Research output: Contribution to journalLetter

2014

Development of 14 microsatellite markers in the Queensland koala (Phascolarctos cinereus adustus) using next generation sequencing technology

Ruiz-Rodriguez, C. T., Ishida, Y., Greenwood, A. D. & Roca, A. L., Jan 1 2014, In : Conservation Genetics Resources. 6, 2, p. 429-431 3 p.

Research output: Contribution to journalLetter

Phascolarctidae
Queensland
Microsatellite Repeats
allele
microsatellite repeats

Development of nineteen polymorphic microsatellite loci in the threatened polar bear (Ursus maritimus) using next generation sequencing

Brandt, J. R., Van Coeverden de Groot, P. J., Zhao, K., Dyck, M. G., Boag, P. T. & Roca, A. L., Mar 1 2014, In : Conservation Genetics Resources. 6, 1, p. 59-61 3 p.

Research output: Contribution to journalLetter

Ursidae
Ursus maritimus
bear
Microsatellite Repeats
microsatellite repeats

Early Americans: Misstated results

Kennett, D. J., Asmerom, Y., Kemp, B. M., Polyak, V., Bolnick, D. A., Malhi, R. S. & Culleton, B. J., Jan 1 2014, In : Science. 345, 6195, 1 p.

Research output: Contribution to journalLetter

Meteorology
Cyclonic Storms
Disasters
Population
Meteorology
Cyclonic Storms
Disasters
Names
Meteorology
Cyclonic Storms
Disasters
Names

Reply to skoyles: Decline in growth rate, not muscle mass, predicts the human childhood peak in brain metabolism

Kuzawa, C. W., Chugani, H. T., Grossman, L. I., Lipovich, L., Muzik, O., Hof, P. R., Wildman, D. E., Sherwood, C. C., Leonard, W. R. & Lange, N., Nov 18 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 46, p. E4910

Research output: Contribution to journalLetter

Biological Evolution
Basal Metabolism
Muscles
Brain
Growth
2013

Duel or diversion? Conscientiousness and executive function in the prediction of health and longevity

Bogg, T. & Roberts, B. W., Jun 1 2013, In : Annals of Behavioral Medicine. 45, 3, p. 400-401 2 p.

Research output: Contribution to journalLetter

Executive Function
Health Behavior
Personality
Health

One hundred years of solitude: Integrating single-strain inoculations with community perspectives in the legume-rhizobium symbiosis

Friesen, M. L. & Heath, K. D., Apr 1 2013, In : New Phytologist. 198, 1, p. 7-9 3 p.

Research output: Contribution to journalLetter

Biological Evolution
Genetic Fitness
Rhizobium
Symbiosis
mutualism

Reply to Maitre et al

Johnson, R. W., Donovan, S. M. & Dilger, R. N., Apr 1 2013, In : Journal of Nutrition. 143, 4, 1 p.

Research output: Contribution to journalLetter

Hematologic Pregnancy Complications
Swine Diseases
Spatial Behavior
Animal Behavior
Iron-Deficiency Anemias

TARGET: A transient transformation system for genome-wide transcription factor target discovery

Bargmann, B. O. R., Marshall-Colon, A., Efroni, I., Ruffel, S., Birnbaum, K. D., Coruzzi, G. M. & Krouk, G., Jan 1 2013, In : Molecular Plant. 6, 3, p. 978-980 3 p.

Research output: Contribution to journalLetter

Transcription Factors
transcription factors
Genome
genome
2012

A European science plan to sustainably increase food security under climate change

Soussana, J. F., Fereres, E., Long, S. P., Mohren, F. G. M. J., Pandya-Lorch, R., Peltonen-Sainio, P., Porter, J. R., Rosswall, T. & von Braun, J., Nov 1 2012, In : Global change biology. 18, 11, p. 3269-3271 3 p.

Research output: Contribution to journalLetter

Climate change

Urgent need for a common metric to make precipitation manipulation experiments comparable

Vicca, S., Gilgen, A. K., Camino Serrano, M., Dreesen, F. E., Dukes, J. S., Estiarte, M., Gray, S. B., Guidolotti, G., Hoeppner, S. S., Leakey, A., Ogaya, R., Ort, D. R., Ostrogovic, M. Z., Rambal, S., Sardans, J., Schmitt, M., Siebers, M., van der Linden, L., van Straaten, O. & Granier, A., Aug 1 2012, In : New Phytologist. 195, 3, p. 518-522 5 p.

Research output: Contribution to journalLetter

Plant Physiological Phenomena
Physiological Adaptation
Species Specificity
Plant Roots
Rain
2011

Competencies: A cure for pre-med curriculum

Anderson, W. A., Amasino, R. M., Ares, M., Banerjee, U., Bartel, B., Corces, V. G., Drennan, C. L., Elgin, S. C. R., Epstein, I. R., Fanning, E., Guillette, L. J., Handelsman, J. O., Hatfull, G. F., Hoy, R. R., Kelley, D., Leinwand, L. A., Losick, R., Lu, Y., Lynn, D. G., Neuhauser, C. & 13 others, O'Dowd, D. K., Olivera, T., Pevzner, P., Richards-Kortum, R. R., Rine, J., Sah, R. L., Strobel, S. A., Walker, G. C., Walt, D. R., Warner, I. M., Wessler, S., Willard, H. F. & Zare, R. N., Nov 11 2011, In : Science. 334, 6057, p. 760-761 2 p.

Research output: Contribution to journalLetter

Curriculum

Creating a buzz about insect genomes

Robinson, G. E., Hackett, K. J., Purcell-Miramontes, M., Brown, S. J., Evans, J. D., Goldsmith, M. R., Lawson, D., Okamuro, J., Robertson, H. M. & Schneider, D. J., Mar 18 2011, In : Science. 331, 6023, 1 p.

Research output: Contribution to journalLetter

Insect Genome
Arthropods
DNA Sequence Analysis
Insects
Genome
2010

Climate change and the integrity of science

Sills, J., Gleick, P. H., Adams, R. M., Amasino, R. M., Anders, E., Anderson, D. J., Anderson, W. W., Anselin, L. E., Arroyo, M. K., Asfaw, B., Ayala, F. J., Bax, A., Bebbington, A. J., Bell, G., Bennett, M. V. L., Bennetzen, J. L., Berenbaum, M. R., Berlin, O. B., Bjorkman, P. J., Blackburn, E. & 236 others, Blamont, J. E., Botchan, M. R., Boyer, J. S., Boyle, E. A., Branton, D., Briggs, S. P., Briggs, W. R., Brill, W. J., Britten, R. J., Broecker, W. S., Brown, J. H., Brown, P. O., Brunger, A. T., Cairns, J., Canfield, D. E., Carpenter, S. R., Carrington, J. C., Cashmore, A. R., Castilla, J. C., Cazenave, A., Chapin, F. S., Ciechanover, A. J., Clapham, D. E., Clark, W. C., Clayton, R. N., Coe, M. D., Conwell, E. M., Cowling, E. B., Cowling, R. M., Cox, C. S., Croteau, R. B., Crothers, D. M., Crutzen, P. J., Daily, G. C., Dalrymple, G. B., Dangl, J. L., Darst, S. A., Davies, D. R., Davis, M. B., De Camilli, P. V., Dean, C., Defries, R. S., Deisenhofer, J., Delmer, D. P., Delong, E. F., Derosier, D. J., Diener, T. O., Dirzo, R., Dixon, J. E., Donoghue, M. J., Doolittle, R. F., Dunne, T., Ehrlich, P. R., Eisenstadt, S. N., Eisner, T., Emanuel, K. A., Englander, S. W., Ernst, W. G., Falkowski, P. G., Feher, G., Ferejohn, J. A., Fersht, A., Fischer, E. H., Fischer, R., Flannery, K. V., Frank, J., Frey, P. A., Fridovich, I., Frieden, C., Futuyma, D. J., Gardner, W. R., Garrett, C. J. R., Gilbert, W., Goldberg, R. B., Goodenough, W. H., Goodman, C. S., Goodman, M., Greengard, P., Hake, S., Hammel, G., Hanson, S., Harrison, S. C., Hart, S. R., Hartl, D. L., Haselkorn, R., Hawkes, K., Hayes, J. M., Hille, B., Hökfelt, T., House, J. S., Hout, M., Hunten, D. M., Izquierdo, I. A., Jagendorf, A. T., Janzen, D. H., Jeanloz, R., Jencks, C. S., Jury, W. A., Kaback, H. R., Kailath, T., Kay, P., Kay, S. A., Kennedy, D., Kerr, A., Kessler, R. C., Khush, G. S., Kieffer, S., Kirch, P. V., Kirk, K., Kivelson, M. G., Klinman, J. P., Klug, A., Knopoff, L., Kornberg, H., Kutzbach, J. E., Lagarias, J. C., Lambeck, K., Landy, A., Langmuir, C. H., Larkins, B. A., Pichon, X. T. L. E., Lenski, R. E., Leopold, E. B., Levin, S. A., Levitt, M., Likens, G. E., Lippincott-Schwartz, J., Lorand, L., Lovejoy, C. O., Lynch, M., Mabogunje, A. L., Malone, T. F., Manabe, S., Marcus, J., Massey, D. S., Mcwilliams, J. C., Medina, E., Melosh, H. J., Meltzer, D. J., Michener, C. D., Miles, E. L., Mooney, H. A., Moore, P. B., Morel, F. M. M., Mosley-Thompson, E. S., Moss, B., Munk, W. H., Myers, N., Nair, G. B., Nathans, J., Nester, E. W., Nicoll, R. A., Novick, R. P., O'Connell, J. F., Olsen, P. E., Opdyke, N. D., Oster, G. F., Ostrom, E., Pace, N. R., Paine, R. T., Palmiter, R. D., Pedlosky, J., Petsko, G. A., Pettengill, G. H., Philander, S. G., Piperno, D. R., Pollard, T. D., Price, P. B., Reichard, P. A., Reskin, B. F., Ricklefs, R. E., Rivest, R. L., Roberts, J. D., Romney, A. K., Rossmann, M. G., Russell, D. W., Rutter, W. J., Sabloff, J. A., Sagdeev, R. Z., Sahlins, M. D., Salmond, A., Sanes, J. R., Schekman, R., Schellnhuber, J., Schindler, D. W., Schmitt, J., Schneider, S. H., Schramm, V. L., Sederoff, R. R., Shatz, C. J., Sherman, F., Sidman, R. L., Sieh, K., Simons, E. L., Singer, B. H., Singer, M. F., Skyrms, B., Sleep, N. H., Smith, B. D., Snyder, S. H., Sokal, R. R., Spencer, C. S., Steitz, T. A., Strier, K. B., Südhof, T. C., Taylor, S. S., Terborgh, J., Thomas, D. H., Thompson, L. G., Tjian, R. T., Turner, M. G., Uyeda, S., Valentine, J. W., Valentine, J. S., Van Etten, J. L., Van Holde, K. E., Vaughan, M., Verba, S., Von Hippel, P. H., Wake, D. B., Walker, A., Walker, J. E., Watson, E. B., Watson, P. J., Weigel, D., Wessler, S. R., West-Eberhard, M. J., White, T. D., Wilson, W. J., Wolfenden, R. V., Wood, J. A., Woodwell, G. M., Wright, H. E., Wu, C., Wunsch, C. & Zoback, M. L., May 7 2010, In : Science. 328, 5979, p. 689-690 2 p.

Research output: Contribution to journalLetter

Response: Strain-specific activation of NF-B by Helicobacter pylori CagA

Lamb, A., Li, J. D., Hatakeyama, M., Peek, R. M., Blanke, S. R. & Chen, L-F., Jan 1 2010, In : EMBO Reports. 11, 1, p. 11-12 2 p.

Research output: Contribution to journalLetter

Helicobacter pylori
2009

A recommendation for naming transcription factor proteins in the grasses

Gray, J., Bevan, M., Brutnell, T., Buell, C. R., Cone, K., Hake, S., Jackson, D., Kellogg, E., Lawrence, C., McCouch, S., Mockler, T., Moose, S. P., Paterson, A., Peterson, T., Rokshar, D., Souza, G. M., Springer, N., Stein, N., Timmermans, M., Wang, G. L. & 1 others, Grotewold, E., Jan 1 2009, In : Plant physiology. 149, 1, p. 4-6 3 p.

Research output: Contribution to journalLetter

Plant Proteins
plant proteins
Poaceae
Transcription Factors
transcription factors
2008

Changes to NIH grant system may backfire

Karp, P. D., Sherlock, G., Gerlt, J. A., Sim, I., Paulsen, I., Babbitt, P. C., Laderoute, K., Hunter, L., Sternberg, P., Wooley, J. & Bourne, P. E., Nov 21 2008, In : Science. 322, 5905, p. 1187-1188 2 p.

Research output: Contribution to journalLetter

Research Peer Review
Organized Financing
National Institutes of Health (U.S.)
Biomedical Research
Greenhouse Effect
Agricultural Crops
Food supply
Chemical Models
Greenhouse effect

Sin nombre virus infection in deer mice, Channel Islands, California

Orrock, J. L. & Allan, B. F., Dec 1 2008, In : Emerging infectious diseases. 14, 12, p. 1965-1966 2 p.

Research output: Contribution to journalLetter

Channel Islands
Sin Nombre virus
Rodent Diseases
Hantavirus Pulmonary Syndrome
Viral Antibodies
2007
Spectrum Analysis
Neoplasms

Response [3]

Long, S. P., Ainsworth, E., Leakey, A., Ort, D. R., Nösberger, J. & Schimel, D., Jan 26 2007, In : Science. 315, 5811, 1 p.

Research output: Contribution to journalLetter

Retraction [1]

Roberts, R. M., Sivaguru, M. & Yong, H. Y., Jul 27 2007, In : Science. 317, 5837, 1 p.

Research output: Contribution to journalLetter

2006

A reply to "Comment on 'Carbon budget of mature no-till ecosystem in North Central Region of the United States' by Dobermann et al." [2]

Hollinger, S. E., Bernacchi, C. & Meyers, T. P., Nov 1 2006, In : Agricultural and Forest Meteorology. 136, 1-2, p. 85-87 3 p.

Research output: Contribution to journalLetter

carbon budget
no-tillage
ecosystems
carbon
ecosystem
2004

How Much at Risk Are Cone Snails? [3] (multiple letters)

Duda, T. F., Bingham, J. P., Livett, B. G., Kohn, A. J., Massilia, G. R., Schultz, J. R., Down, J., Sandall, D., Sweedler, J. V., Fainzilber, M., Chivian, E., Roberts, C. M. & Bernstein, A. S., Feb 13 2004, In : Science. 303, 5660, p. 955-957 3 p.

Research output: Contribution to journalLetter

2002

Aji and Goldenfeld Reply

Aji, V. & Goldenfeld, N. D., Jan 1 2002, In : Physical review letters. 89, 10

Research output: Contribution to journalLetter

Conflicts around a study of Mexican crops [1] (multiple letters)

Suarez, A., Benard, M., Tsutsui, N. D., Blackledge, T. A., Copren, K., Sarnat, E. M., Wild, A. L., Getz, W. M., Starks, P. T., Will, K., PalsbÖll, P. J., Moritz, C., Richman, A. D., Worthy, K., Strohman, R. C., Billings, P. R., Metz, M., F�tterer, J., Kaplinsky, N., Jiménez-Contreras, E. & 3 others, López-Cózar, E. D., Ruiz-Pérez, R. & Fernández, V. M., Jun 27 2002, In : Nature. 417, 6892, p. 897-898 2 p.

Research output: Contribution to journalLetter