Research Output 1960 2018

Filter
Comment/debate
2017

A roadmap for improving the representation of photosynthesis in Earth system models

Rogers, A., Medlyn, B. E., Dukes, J. S., Bonan, G., von Caemmerer, S., Dietze, M. C., Kattge, J., Leakey, A. D. B., Mercado, L. M., Niinemets, Ü., Prentice, I. C., Serbin, S. P., Sitch, S., Way, D. A. & Zaehle, S. Jan 1 2017 In : New Phytologist. 213, 1, p. 22-42 21 p.

Research output: Research - peer-reviewComment/debate

Photosynthesis
photosynthesis
biosphere
Carbon Monoxide
Research
Systems Biology
Genomics
Estrogen Receptors
Molecular Biology
Genes

Erratum: "The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species", [Genome Biol. (2016), 17, (192)]

Papanicolaou, A. , Schetelig, M. F. , Arensburger, P. , Atkinson, P. W. , Benoit, J. B. , Bourtzis, K. , Castañera, P. , Cavanaugh, J. P. , Chao, H. , Childers, C. , Curril, I. , Dinh, H. , Doddapaneni, H. V. , Dolan, A. , Dugan, S. , Friedrich, M. , Gasperi, G. , Geib, S. , Georgakilas, G. , Gibbs, R. A. & 45 others Giers, S. D., Gomulski, L. M., González-Guzmán, M., Guillem-Amat, A., Han, Y., Hatzigeorgiou, A. G., Hernández-Crespo, P., Hughes, D. S. T., Jones, J. W., Karagkouni, D., Koskinioti, P., Lee, S. L., Malacrida, A. R., Manni, M., Mathiopoulos, K., Meccariello, A., Munoz-Torres, M., Murali, S. C., Murphy, T. D., Muzny, D. M., Oberhofer, G., Ortego, F., Paraskevopoulou, M. D., Poelchau, M., Qu, J., Reczko, M., Robertson, H. M., Rosendale, A. J., Rosselot, A. E., Saccone, G., Salvemini, M., Savini, G., Schreiner, P., Scolari, F., Siciliano, P., Sim, S. B., Tsiamis, G., Ureña, E., S.Vlachos, I., Werren, J. H., Wimmer, E. A., Worley, K. C., Zacharopoulou, A., Richards, S. & Handler, A. M. Jan 18 2017 In : Genome Biology. 18, 1, 11

Research output: Research - peer-reviewComment/debate

Ceratitis capitata
funding
pests
Biological Sciences
genome

Erratum to: Screening wild and semi-free ranging great apes for putative sexually transmitted diseases: Evidence of Trichomonadidae infections ((2015), 10.1002/ajp.22442)

Rushmore, J., Allison, A. B., Edwards, E. E., Bagal, U., Altizer, S., Cranfield, M. R., Glenn, T. C., Liu, H., Mudakikwa, A., Mugisha, L., Muller, M. N., Stumpf, R. M., Thompson, M. E., Wrangham, R. & Yabsley, M. J. Apr 1 2017 In : American Journal of Primatology. 79, 4, p. 1-2 2 p.

Research output: Research - peer-reviewComment/debate

sexually transmitted diseases
Pongidae
urine
screening
infection
Nonequilibrium Statistical Mechanics
Statistical Physics
Turbulence
statistical mechanics
turbulence

Erratum to: Notomelia and related neural tube defects in a baby born in Niger: case report and literature review (Childs Nerv Syst, (2017), 33, 529–534, 10.1007/s00381-017-3337-x)

Kelani, A., Moumouni, H., Issa, A., Younsaa, H., Fokou, H., Sani, R., Sanoussi, S., Denholm, L., Beever, J. & Catala, M. Nov 1 2017 In : Child's Nervous System. 33, 11, 1 p.

Research output: Research - peer-reviewComment/debate

Human milk oligosaccharides: Potent weapons in the battle against rotavirus infection

Donovan, S. M. Sep 1 2017 In : Journal of Nutrition. 147, 9, p. 1605-1606 2 p.

Research output: Research - peer-reviewComment/debate

RubisCO and the Search for Biomolecular Culprits of Planetary Change

Caetano-Anollés, G. Nov 1 2017 In : BioEssays. 39, 11, 1700174

Research output: Research - peer-reviewComment/debate

Trees harness the power of microbes to survive climate change

Lau, J. A., Lennon, J. T. & Heath, K. D. Oct 17 2017 In : Proceedings of the National Academy of Sciences of the United States of America. 114, 42, p. 11009-11011 3 p.

Research output: Research - peer-reviewComment/debate

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

Catchen, J. M., Hohenlohe, P. A., Bernatchez, L., Funk, W. C., Andrews, K. R. & Allendorf, F. W. May 1 2017 In : Molecular Ecology Resources. 17, 3, p. 362-365 4 p.

Research output: Research - peer-reviewComment/debate

Research Personnel
Population
marker
researchers
Genome
2016

2015 Gabriel W. Lasker Award

Malhi, R. S. Sep 1 2016 In : Human Biology. 88, 4, p. 301 1 p.

Research output: Research - peer-reviewComment/debate

A Hox-Embedded Long Noncoding RNA: Is It All Hot Air?

Selleri, L., Bartolomei, M. S., Bickmore, W. A., He, L., Stubbs, L., Reik, W. & Barsh, G. S. Dec 1 2016 In : PLoS Genetics. 12, 12, e1006485

Research output: Research - peer-reviewComment/debate

Correction to "a General Strategy for the Discovery of Metabolic Pathways: D -Threitol, l -Threitol, and Erythritol Utilization in Mycobacterium smegmatis" (J. Am. Chem. Soc. (2015) 137 (14570-14573) 10.1021/jacs.5b08968)

Huang, H., Carter, M. S., Vetting, M. W., Al-Obaidi, N., Patskovsky, Y., Almo, S. C. & Gerlt, J. A. Apr 20 2016 In : Journal of the American Chemical Society. 138, 12, p. 4267 1 p.

Research output: Research - peer-reviewComment/debate

Erratum: DICER1 and microRNA regulation in post-traumatic stress disorder with comorbid depression (Nature Communications (2015) 6 (10106) DOI: 10.1038/ncomms10106)

Wingo, A. P., Almli, L. M., Stevens, J. S., Klengel, T., Uddin, M., Li, Y., Bustamante, A. C., Lori, A., Koen, N., Stein, D. J., Smith, A. K., Aiello, A. E., Koenen, K. C., Wildman, D. E., Galea, S., Bradley, B., Binder, E. B., Jin, P., Gibson, G. & Ressler, K. J. Mar 3 2016 In : Nature Communications. 7, 10958

Research output: Research - peer-reviewComment/debate

Erratum: Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp (The ISME Journal (2016) 10, 532; (DOI:10.1038/ismej.2015.252))

Gomez, A., Rothman, J. M., Petrzelkova, K., Yeoman, C. J., Vlckova, K., Umaña, J. D., Carr, M., Modry, D., Todd, A., Torralba, M., Nelson, K. E., Stumpf, R. M., Wilson, B. A., Blekhman, R., White, B. A. & Leigh, S. R. Feb 1 2016 In : ISME Journal. 10, 2, p. 532 1 p.

Research output: Research - peer-reviewComment/debate

Erratum: Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection (Proceedings of the National Academy of Sciences of the United States of America (2015) 112 (14936-14941) DOI 10.1073/pnas.1506226112)

Mesquita, R. D. , Vionette-Amaral, R. J. , Lowenberger, C. , Rivera-Pomar, R. , Monteiro, F. A. , Minx, P. , Spieth, J. , Carvalho, A. B. , Panzera, F. , Lawson, D. , Torres, A. Q. , Ribeiro, J. M. C. , Sorgine, M. H. F. , Waterhouse, R. M. , Montague, M. J. , Abad-Franch, F. , Alves-Bezerra, M. , Amaral, L. R. , Araujo, H. M. , Araujo, R. N. & 97 others Aravind, L., Atella, G. C., Azambuja, P., Berni, M., Bittencourt-Cunha, P. R., Braz, G. R. C., Calderón-Fernández, G., Carareto, C. M. A., Christensen, M. B., Costa, I. R., Costa, S. G., Dansa, M., Daumas-Filho, C. R. O., De-Paula, I. F., Dias, F. A., Dimopoulos, G., Emrich, S. J., Esponda-Behrens, N., Fampa, P., Fernandez-Medina, R. D., Da Fonseca, R. N., Fontenele, M., Fronick, C., Fulton, L. A., Gandara, A. C., Garcia, E. S., Genta, F. A., Giraldo-Calderón, G. I., Gomes, B., Gondim, K. C., Granzotto, A., Guarneri, A. A., Guigó, R., Harry, M., Hughes, D. S. T., Jablonka, W., Jacquin-Joly, E., Juárez, M. P., Koerich, L. B., Lange, A. B., Latorre-Estivalis, J. M., Lavore, A., Lawrence, G. G., Lazoski, C., Lazzari, C. R., Lopes, R. R., Lorenzo, M. G., Lugon, M. D., Majerowicz, D., Marcet, P. L., Mariotti, M., Masuda, H., Megy, K., Melo, A. C. A., Missirlis, F., Mota, T., Noriega, F. G., Nouzova, M., Nunes, R. D., Oliveir, R. L. L., Oliveira-Silveira, G., Ons, S., Orchard, I., Pagola, L., Paiva-Silva, G. O., Pascual, A., Pavan, M. G., Pedrini, N., Peixoto, A. A., Pereira, M. H., Pike, A., Polycarpo, C., Prosdocimi, F., Ribeiro-Rodrigues, R., Robertson, H. M., Salerno, A. P., Salmon, D., Santesmasses, D., Schama, R., Seabra, E. S., Silva-Cardoso, L., Silva-Neto, M. A. C., Souza-Gomes, M., Sterkel, M., Taracena, M. L., Tojo, M., Tu, Z. J., Tubio, J. M. C., Ursic-Bedoya, R., Venancio, T. M., Walter-Nuno, A. B., Wilson, D., Warren, W. C., Wilson, R. K., Huebner, E., Dotson, E. M. & Oliveira, P. L. Mar 8 2016 In : Proceedings of the National Academy of Sciences of the United States of America. 113, 10, p. E1415-E1416

Research output: Research - peer-reviewComment/debate

Erratum: Random Field Driven Spatial Complexity at the Mott Transition in VO2 (Physical Review Letters (2016) 116 (036401) DOI: 10.1103/PhysRevLett.116.036401)

Liu, S., Phillabaum, B., Carlson, E. W., Dahmen, K. A., Vidhyadhiraja, N. S., Qazilbash, M. M. & Basov, D. N. May 19 2016 In : Physical Review Letters. 116, 20, 209901

Research output: Research - peer-reviewComment/debate

Erratum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons (Nature Genetics (2016) 48 (427-437))

Braasch, I. , Gehrke, A. R. , Smith, J. J. , Kawasaki, K. , Manousaki, T. , Pasquier, J. , Amores, A. , Desvignes, T. , Batzel, P. , Catchen, J. , Berlin, A. M. , Campbell, M. S. , Barrell, D. , Martin, K. J. , Mulley, J. F. , Ravi, V. , Lee, A. P. , Nakamura, T. , Chalopin, D. , Fan, S. & 41 others Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F. E. G., Sun, Y., Hertel, J., Beam, M. J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J. H., Litman, G. W., Litman, R. T., Mikami, M., Ota, T., Saha, N. R., Williams, L., Stadler, P. F., Wang, H., Taylor, J. S., Fontenot, Q., Ferrara, A., Searle, S. M. J., Aken, B., Yandell, M., Schneider, I., Yoder, J. A., Volff, J. N., Meyer, A., Amemiya, C. T., Venkatesh, B., Holland, P. W. H., Guiguen, Y., Bobe, J., Shubin, N. H., Di Palma, F., Alföldi, J., Lindblad-Toh, K. & Postlethwait, J. H. Jun 1 2016 In : Nature Genetics. 48, 6, 1 p.

Research output: Research - peer-reviewComment/debate

Erratum to Episodic diversifying selection shaped the genomes of gibbon ape leukemia virus and related gammaretroviruses [J Virol, 90, 4 (2016) 1757-1772]

Alfano, N., Kolokotronis, S. O., Tsangaras, K., Roca, A. L., Xu, W., Eiden, M. V. & Greenwood, A. D. Apr 1 2016 In : Journal of Virology. 90, 8, p. 4254 1 p.

Research output: Research - peer-reviewComment/debate

Erratum to Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis [BMC Genomics, (2016), 17] DOI: 10.1186/s12864-016-2472-1

Despres, J., Forano, E., Lepercq, P., Comtet-Marre, S., Jubelin, G., Yeoman, C. J., Miller, M. E. B., Fields, C. J., Terrapon, N., Le Bourvellec, C., Renard, C. M. G. C., Henrissat, B., White, B. A. & Mosoni, P. Jun 6 2016 In : BMC Genomics. 17, 1, 426

Research output: Research - peer-reviewComment/debate

Microbiomes, metagenomics, and primate conservation: New strategies, tools, and applications

Stumpf, R. M., Gomez, A., Amato, K. R., Yeoman, C. J., Polk, J. D., Wilson, B. A., Nelson, K. E., White, B. A. & Leigh, S. R. Jul 1 2016 In : Biological Conservation. 199, p. 56-66 11 p.

Research output: Research - peer-reviewComment/debate

Primates
microbiome
primate
monitoring
health

Nanopore Sequencing: Graphene Nanopores for Protein Sequencing (Adv. Funct. Mater. 27/2016)

Wilson, J., Sloman, L., He, Z. & Aksimentiev, A. Jul 19 2016 In : Advanced Functional Materials. 26, 27, p. 4829 1 p.

Research output: Research - peer-reviewComment/debate

Pet scans

Fan, T. M., Le Blanc, A. K. & Mason, N. Apr 1 2016 In : Scientist. 30, 4

Research output: Research - peer-reviewComment/debate

Transgenic bovine as bioreactors: Challenges and perspectives

Monzani, P. S., Adona, P. R., Ohashi, O. M., Meirelles, F. V. & Wheeler, M. B. Apr 1 2016 In : Bioengineered. 7, 3, p. 123-131 9 p.

Research output: Research - peer-reviewComment/debate

Bioreactors
Recombinant Proteins
Recombinant proteins
Milk
Proteins
2015

AAAS annual election: Preliminary announcement

Anderson, J. L., Hockfield, S., Beall, C. M., Berenbaum, M. R., Miranda, M. L., Stuss, D. T., Borchelt, R. E., Clark, A. M., Dunwoody, S., Francisco, J. S., Graham, S. L., Harthorn, B. H., Press, W. H. & Raven, P. H. Sep 25 2015 In : Science. 349, 6255, p. 1466 1 p.

Research output: Research - peer-reviewComment/debate

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

Yang, X. , Cushman, J. C. , Borland, A. M. , Edwards, E. J. , Wullschleger, S. D. , Tuskan, G. A. , Owen, N. A. , Griffiths, H. , Smith, J. A. C. , De Paoli, H. C. , Weston, D. J. , Cottingham, R. , Hartwell, J. , Davis, S. C. , Silvera, K. , Ming, R. , Schlauch, K. , Abraham, P. , Stewart, J. R. , Guo, H. B. & 31 others Albion, R., Ha, J., Lim, S. D., Wone, B. W. M., Yim, W. C., Garcia, T., Mayer, J. A., Petereit, J., Nair, S. S., Casey, E., Hettich, R. L., Ceusters, J., Ranjan, P., Palla, K. J., Yin, H., Reyes-García, C., Andrade, J. L., Freschi, L., Beltrán, J. D., Dever, L. V., Boxall, S. F., Waller, J., Davies, J., Bupphada, P., Kadu, N., Winter, K., Sage, R. F., Aguilar, C. N., Schmutz, J., Jenkins, J. & Holtum, J. A. M. Aug 1 2015 In : New Phytologist. 207, 3, p. 491-504 14 p.

Research output: Research - peer-reviewComment/debate

Crassulacean acid metabolism
bioenergy
Food
Acids
Research

Correction to: Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline Development(PLoS Biol, (2015), 13,8)

Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A. Aug 14 2015 In : PLoS Biology. 13, 8, e1002234

Research output: Research - peer-reviewComment/debate

Documenting bee decline or squandering scarce resources

Tepedino, V. J., Durham, S., Cameron, S. A. & Goodell, K. Feb 1 2015 In : Conservation Biology. 29, 1, p. 280-282 3 p.

Research output: Research - peer-reviewComment/debate

Erratum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax (Nature Communications (2015) 5 (3966) DOI: 10.1038/ncomms4966)

Fang, X. , Nevo, E. , Han, L. , Levanon, E. Y. , Zhao, J. , Avivi, A. , Larkin, D. , Jiang, X. , Feranchuk, S. , Zhu, Y. , Fishman, A. , Feng, Y. , Sher, N. , Xiong, Z. , Hankeln, T. , Huang, Z. , Gorbunova, V. , Zhang, L. , Zhao, W. , Wildman, D. E. & 33 others Xiong, Y., Gudkov, A., Zheng, Q., Rechavi, G., Liu, S., Bazak, L., Chen, J., Knisbacher, B. A., Lu, Y., Shams, I., Gajda, K., Farré, M., Kim, J., Lewin, H. A., Ma, J., Band, M., Bicker, A., Kranz, A., Mattheus, T., Schmidt, H., Seluanov, A., Azpurua, J., McGowen, M. R., Ben Jacob, E., Li, K., Peng, S., Zhu, X., Liao, X., Li, S., Krogh, A., Zhou, X., Brodsky, L. & Wang, J. Aug 12 2015 In : Nature Communications. 6, 8051

Research output: Research - peer-reviewComment/debate

Erratum: Retraction of mechanical reconfiguration of stereoisomers(Journal of the American Chemical Society (2010) 132 (3256-3257) DOI: 10.1021/ja910716s)

Wiggins, K. M., Hudnall, T. W., Shen, Q., Kryger, M. J., Moore, J. S. & Bielawski, C. W. 2015 In : Journal of the American Chemical Society. 137, 9, p. 3428 1 p.

Research output: Research - peer-reviewComment/debate

Erratum: Computational high-resolution optical imaging of the living human retina (Nature Photonics (2015) 9 (440-443))

Shemonski, N. D., South, F. A., Liu, Y. Z., Adie, S. G., Carney, P. S. & Boppart, S. A. Sep 29 2015 In : Nature Photonics. 9, 10, p. 702 1 p.

Research output: Research - peer-reviewComment/debate

Erratum to optical coherence tomography for the diagnosis and evaluation of human otitis media [J Korean Med Sci 2015; 30: 328-335]

Cho, N. H., Lee, S. H., Jung, W., Jang, J. H., Boppart, S. A. & Kim, J. 2015 In : Journal of Korean Medical Science. 30, 6, p. 834 1 p.

Research output: Research - peer-reviewComment/debate

Expanding the Biology Toolkit

Bertozzi, C., Ge, H., Ma, J. & Milenkovic, O. Dec 3 2015 In : Cell. 163, 6, p. 1306 1 p.

Research output: Research - peer-reviewComment/debate

Jun-Long Zhang

Zhang, J. L., Che, C. M. & Lu, Y. 2015 In : ChemPlusChem. 80, 1, p. 25 1 p.

Research output: Research - peer-reviewComment/debate

Leo Philip Kadanoff: Maestro who connected physics on multiple scales

Goldenfeld, N. Dec 1 2015 In : Nature Physics. 11, 12, p. 995 1 p.

Research output: Research - peer-reviewComment/debate

Resolving regulatory uncertainty: Legislative language for potentially invasive bioenergy feedstocks

Quinn, L. D., Scott, E. C., Endres, A. B., Barney, J. N., Voigt, T. B. & Mccubbins, J. Sep 1 2015 In : GCB Bioenergy. 7, 5, p. 909-915 7 p.

Research output: Research - peer-reviewComment/debate

energy crops
bioenergy
feedstocks
uncertainty
Uncertainty

Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds"

Cracraft, J., Houde, P., Ho, S. Y. W., Mindell, D. P., Fjeldså, J., Lindow, B., Edwards, S. V., Rahbek, C., Mirarab, S., Warnow, T., Gilbert, M. T. P., Zhang, G., Braun, E. L. & Jarvis, E. D. Sep 25 2015 In : Science. 349, 6255, p. 1460-b

Research output: Research - peer-reviewComment/debate

Birds
Genome
Biological Extinction
Phylogeny

Settling the debate on birth order and personality

Damian, R. I. & Roberts, B. W. Nov 17 2015 In : Proceedings of the National Academy of Sciences of the United States of America. 112, 46, p. 14119-14120 2 p.

Research output: Research - peer-reviewComment/debate

Targeting leukemic stem cells with multifunctional bioactive polypeptide nanoparticles

Uckun, F. M., Qazi, S. & Cheng, J. Apr 1 2015 In : Future Oncology. 11, 8, p. 1149-1152 4 p.

Research output: Research - peer-reviewComment/debate

2014

Black and white with some shades of grey: The diverse responses of inducible metabolic pathways in Escherichia coli

Rao, C. V. & Koirala, S. Sep 1 2014 In : Molecular Microbiology. 93, 6, p. 1079-1083 5 p.

Research output: Research - peer-reviewComment/debate

Lactose
Metabolic Networks and Pathways
Escherichia coli
hydroquinone
Lac Operon

Erratum: Spatial organization of Pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal Raman microscopy (Analyst (2014) DOI: 10.1039/c4an00435c)

Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W. Nov 21 2014 In : Analyst. 139, 22, p. 6058-6060 3 p.

Research output: Research - peer-reviewComment/debate

Erratum: DNA looping increases the range of bistability in a stochastic model of the lac genetic switch (Physical Biology (2013) 10 (026002))

Earnest, T. M., Roberts, E., Assaf, M., Dahmen, K. & Luthey-Schulten, Z. 2014 In : Physical Biology. 11, 2, 029501

Research output: Research - peer-reviewComment/debate

Erratum to: Temperature Effects on Deformation and Serration Behavior of High-Entropy Alloys (HEAs)(JOM, 66, 10, (2014), DOI 10.1007/s11837-014-1130-9)

Antonaglia, J., Xie, X., Tang, Z., Tsai, C. W., Qiao, J. W., Zhang, Y., Laktionova, M. O., Tabachnikova, E. D., Carroll, R., Yeh, J. W., Senkov, O. N., Gao, M. C., Uhl, J. T., Liaw, P. K. & Dahmen, K. A. Nov 25 2014 In : JOM. 66, 12, 1 p.

Research output: Research - peer-reviewComment/debate

Happy Anniversary, Journal of Chemical Ecology!

Berenbaum, M. R. Apr 1 2014 In : Journal of Chemical Ecology. 40, 4, p. 308 1 p.

Research output: Research - peer-reviewComment/debate

Uranium extraction: Coordination chemistry in the ocean

Lu, Y. Mar 2014 In : Nature Chemistry. 6, 3, p. 175-176 2 p.

Research output: Research - peer-reviewComment/debate