Research Output 1960 2018

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2017

A roadmap for improving the representation of photosynthesis in Earth system models

Rogers, A., Medlyn, B. E., Dukes, J. S., Bonan, G., von Caemmerer, S., Dietze, M. C., Kattge, J., Leakey, A. D. B., Mercado, L. M., Niinemets, Ü., Prentice, I. C., Serbin, S. P., Sitch, S., Way, D. A. & Zaehle, S. Jan 1 2017 In : New Phytologist. 213, 1, p. 22-42 21 p.

Research output: Research - peer-reviewComment/debate

Photosynthesis
photosynthesis
biosphere
Carbon Monoxide
Research

Commentary: History of the ribosome and the origin of translation

Caetano-Anollés, D. & Caetano-Anollés, G. Jan 10 2017 In : Frontiers in Molecular Biosciences. 3, JAN, 87

Research output: Research - peer-reviewComment/debate

Molecular Evolution
Ribosomes
Peer Review
Microfluidics
Embryonic Structures
corrigendum
In Vitro Techniques
Systems Biology
Genomics
Estrogen Receptors
Molecular Biology
Genes

Erratum: "The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species", [Genome Biol. (2016), 17, (192)]

Papanicolaou, A. , Schetelig, M. F. , Arensburger, P. , Atkinson, P. W. , Benoit, J. B. , Bourtzis, K. , Castañera, P. , Cavanaugh, J. P. , Chao, H. , Childers, C. , Curril, I. , Dinh, H. , Doddapaneni, H. V. , Dolan, A. , Dugan, S. , Friedrich, M. , Gasperi, G. , Geib, S. , Georgakilas, G. , Gibbs, R. A. & 45 others Giers, S. D., Gomulski, L. M., González-Guzmán, M., Guillem-Amat, A., Han, Y., Hatzigeorgiou, A. G., Hernández-Crespo, P., Hughes, D. S. T., Jones, J. W., Karagkouni, D., Koskinioti, P., Lee, S. L., Malacrida, A. R., Manni, M., Mathiopoulos, K., Meccariello, A., Munoz-Torres, M., Murali, S. C., Murphy, T. D., Muzny, D. M., Oberhofer, G., Ortego, F., Paraskevopoulou, M. D., Poelchau, M., Qu, J., Reczko, M., Robertson, H. M., Rosendale, A. J., Rosselot, A. E., Saccone, G., Salvemini, M., Savini, G., Schreiner, P., Scolari, F., Siciliano, P., Sim, S. B., Tsiamis, G., Ureña, E., S.Vlachos, I., Werren, J. H., Wimmer, E. A., Worley, K. C., Zacharopoulou, A., Richards, S. & Handler, A. M. Jan 18 2017 In : Genome Biology. 18, 1, 11

Research output: Research - peer-reviewComment/debate

Ceratitis capitata
funding
pests
Biological Sciences
genome
Zea mays
Breeding
Genome
Genes
Manuscripts

Erratum: Heme Binding Biguanides Target Cytochrome P450-Dependent Cancer Cell Mitochondria (Cell Chemical Biology (2017) 24(10) (1259–1275.e6) (S2451945617302830)(10.1016/j.chembiol.2017.08.009))

Guo, Z. , Sevrioukova, I. F. , Denisov, I. G. , Zhang, X. , Chiu, T. L. , Thomas, D. G. , Hanse, E. A. , Cuellar, R. A. D. , Grinkova, Y. V. , Langenfeld, V. W. , Swedien, D. S. , Stamschror, J. D. , Alvarez, J. , Luna, F. , Galván, A. , Bae, Y. K. , Wulfkuhle, J. D. , Gallagher, R. I. , Petricoin, E. F. , Norris, B. & 17 others Flory, C. M., Schumacher, R. J., O'Sullivan, M. G., Cao, Q., Chu, H., Lipscomb, J. D., Atkins, W. M., Gupta, K., Kelekar, A., Blair, I. A., Capdevila, J. H., Falck, J. R., Sligar, S. G., Poulos, T. L., Georg, G. I., Ambrose, E. & Potter, D. A. Oct 19 2017 In : Cell Chemical Biology. 24, 10, 1 p.

Research output: Research - peer-reviewComment/debate

Biguanides
Heme
Cytochrome P-450 Enzyme System
Cell Biology
Mitochondria
Peroxisome Proliferator-Activated Receptors
RNA Polymerase II
Adiponectin
Adipocytes
Cell Biology

Erratum to: Notomelia and related neural tube defects in a baby born in Niger: case report and literature review (Childs Nerv Syst, (2017), 33, 529–534, 10.1007/s00381-017-3337-x)

Kelani, A., Moumouni, H., Issa, A., Younsaa, H., Fokou, H., Sani, R., Sanoussi, S., Denholm, L., Beever, J. & Catala, M. Nov 1 2017 In : Child's Nervous System. 33, 11, 1 p.

Research output: Research - peer-reviewComment/debate

Niger
Neural Tube Defects
Alleles
Mutation
Population

Erratum to: Screening wild and semi-free ranging great apes for putative sexually transmitted diseases: Evidence of Trichomonadidae infections ((2015), 10.1002/ajp.22442)

Rushmore, J., Allison, A. B., Edwards, E. E., Bagal, U., Altizer, S., Cranfield, M. R., Glenn, T. C., Liu, H., Mudakikwa, A., Mugisha, L., Muller, M. N., Stumpf, R. M., Thompson, M. E., Wrangham, R. & Yabsley, M. J. Apr 1 2017 In : American Journal of Primatology. 79, 4, p. 1-2 2 p.

Research output: Research - peer-reviewComment/debate

sexually transmitted diseases
Pongidae
urine
screening
infection
Nonequilibrium Statistical Mechanics
Statistical Physics
Turbulence
statistical mechanics
turbulence

Human milk oligosaccharides: Potent weapons in the battle against rotavirus infection

Donovan, S. M. Sep 1 2017 In : Journal of Nutrition. 147, 9, p. 1605-1606 2 p.

Research output: Research - peer-reviewComment/debate

Rotavirus Infections
Weapons
Human Milk
Oligosaccharides

RubisCO and the Search for Biomolecular Culprits of Planetary Change

Caetano-Anollés, G. Nov 1 2017 In : BioEssays. 39, 11, 1700174

Research output: Research - peer-reviewComment/debate

Ribulose-Bisphosphate Carboxylase

There is no special sauce: A comment on Beekman and Jordan

Bell, A. M. May 1 2017 In : Behavioral Ecology. 28, 3, p. 626-627 2 p.

Research output: Research - peer-reviewComment/debate

sauces
Jordan

Trees harness the power of microbes to survive climate change

Lau, J. A., Lennon, J. T. & Heath, K. D. Oct 17 2017 In : Proceedings of the National Academy of Sciences of the United States of America. 114, 42, p. 11009-11011 3 p.

Research output: Research - peer-reviewComment/debate

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

Catchen, J. M., Hohenlohe, P. A., Bernatchez, L., Funk, W. C., Andrews, K. R. & Allendorf, F. W. May 1 2017 In : Molecular Ecology Resources. 17, 3, p. 362-365 4 p.

Research output: Research - peer-reviewComment/debate

Research Personnel
Population
marker
researchers
Genome
2016

2015 Gabriel W. Lasker Award

Malhi, R. S. Sep 1 2016 In : Human Biology. 88, 4, 1 p.

Research output: Research - peer-reviewComment/debate

honors and awards

A Hox-Embedded Long Noncoding RNA: Is It All Hot Air?

Selleri, L., Bartolomei, M. S., Bickmore, W. A., He, L., Stubbs, L., Reik, W. & Barsh, G. S. Dec 1 2016 In : PLoS Genetics. 12, 12, e1006485

Research output: Research - peer-reviewComment/debate

Long Noncoding RNA
Air
RNA
air
non-coding RNA
Erythritol
Mycobacterium smegmatis
Metabolic Networks and Pathways
threitol
Growth temperature
Nerve Growth Factor
corrigendum

Erratum: Random Field Driven Spatial Complexity at the Mott Transition in VO2 (Physical Review Letters (2016) 116 (036401) DOI: 10.1103/PhysRevLett.116.036401)

Liu, S., Phillabaum, B., Carlson, E. W., Dahmen, K. A., Vidhyadhiraja, N. S., Qazilbash, M. M. & Basov, D. N. May 19 2016 In : Physical Review Letters. 116, 20, 209901

Research output: Research - peer-reviewComment/debate

Erratum: Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection (Proceedings of the National Academy of Sciences of the United States of America (2015) 112 (14936-14941) DOI 10.1073/pnas.1506226112)

Mesquita, R. D. , Vionette-Amaral, R. J. , Lowenberger, C. , Rivera-Pomar, R. , Monteiro, F. A. , Minx, P. , Spieth, J. , Carvalho, A. B. , Panzera, F. , Lawson, D. , Torres, A. Q. , Ribeiro, J. M. C. , Sorgine, M. H. F. , Waterhouse, R. M. , Montague, M. J. , Abad-Franch, F. , Alves-Bezerra, M. , Amaral, L. R. , Araujo, H. M. , Araujo, R. N. & 97 others Aravind, L., Atella, G. C., Azambuja, P., Berni, M., Bittencourt-Cunha, P. R., Braz, G. R. C., Calderón-Fernández, G., Carareto, C. M. A., Christensen, M. B., Costa, I. R., Costa, S. G., Dansa, M., Daumas-Filho, C. R. O., De-Paula, I. F., Dias, F. A., Dimopoulos, G., Emrich, S. J., Esponda-Behrens, N., Fampa, P., Fernandez-Medina, R. D., Da Fonseca, R. N., Fontenele, M., Fronick, C., Fulton, L. A., Gandara, A. C., Garcia, E. S., Genta, F. A., Giraldo-Calderón, G. I., Gomes, B., Gondim, K. C., Granzotto, A., Guarneri, A. A., Guigó, R., Harry, M., Hughes, D. S. T., Jablonka, W., Jacquin-Joly, E., Juárez, M. P., Koerich, L. B., Lange, A. B., Latorre-Estivalis, J. M., Lavore, A., Lawrence, G. G., Lazoski, C., Lazzari, C. R., Lopes, R. R., Lorenzo, M. G., Lugon, M. D., Majerowicz, D., Marcet, P. L., Mariotti, M., Masuda, H., Megy, K., Melo, A. C. A., Missirlis, F., Mota, T., Noriega, F. G., Nouzova, M., Nunes, R. D., Oliveir, R. L. L., Oliveira-Silveira, G., Ons, S., Orchard, I., Pagola, L., Paiva-Silva, G. O., Pascual, A., Pavan, M. G., Pedrini, N., Peixoto, A. A., Pereira, M. H., Pike, A., Polycarpo, C., Prosdocimi, F., Ribeiro-Rodrigues, R., Robertson, H. M., Salerno, A. P., Salmon, D., Santesmasses, D., Schama, R., Seabra, E. S., Silva-Cardoso, L., Silva-Neto, M. A. C., Souza-Gomes, M., Sterkel, M., Taracena, M. L., Tojo, M., Tu, Z. J., Tubio, J. M. C., Ursic-Bedoya, R., Venancio, T. M., Walter-Nuno, A. B., Wilson, D., Warren, W. C., Wilson, R. K., Huebner, E., Dotson, E. M. & Oliveira, P. L. Mar 8 2016 In : Proceedings of the National Academy of Sciences of the United States of America. 113, 10, p. E1415-E1416

Research output: Research - peer-reviewComment/debate

Erratum: Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp (The ISME Journal (2016) 10, 532; (DOI:10.1038/ismej.2015.252))

Gomez, A., Rothman, J. M., Petrzelkova, K., Yeoman, C. J., Vlckova, K., Umaña, J. D., Carr, M., Modry, D., Todd, A., Torralba, M., Nelson, K. E., Stumpf, R. M., Wilson, B. A., Blekhman, R., White, B. A. & Leigh, S. R. Feb 1 2016 In : ISME Journal. 10, 2, 1 p.

Research output: Research - peer-reviewComment/debate

Gorilla
temporal variation
digestive system
microorganisms
diet

Erratum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons (Nature Genetics (2016) 48 (427-437))

Braasch, I. , Gehrke, A. R. , Smith, J. J. , Kawasaki, K. , Manousaki, T. , Pasquier, J. , Amores, A. , Desvignes, T. , Batzel, P. , Catchen, J. , Berlin, A. M. , Campbell, M. S. , Barrell, D. , Martin, K. J. , Mulley, J. F. , Ravi, V. , Lee, A. P. , Nakamura, T. , Chalopin, D. , Fan, S. & 41 others Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F. E. G., Sun, Y., Hertel, J., Beam, M. J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J. H., Litman, G. W., Litman, R. T., Mikami, M., Ota, T., Saha, N. R., Williams, L., Stadler, P. F., Wang, H., Taylor, J. S., Fontenot, Q., Ferrara, A., Searle, S. M. J., Aken, B., Yandell, M., Schneider, I., Yoder, J. A., Volff, J. N., Meyer, A., Amemiya, C. T., Venkatesh, B., Holland, P. W. H., Guiguen, Y., Bobe, J., Shubin, N. H., Di Palma, F., Alföldi, J., Lindblad-Toh, K. & Postlethwait, J. H. Jun 1 2016 In : Nature Genetics. 48, 6, 1 p.

Research output: Research - peer-reviewComment/debate

Erratum: DICER1 and microRNA regulation in post-traumatic stress disorder with comorbid depression (Nature Communications (2015) 6 (10106) DOI: 10.1038/ncomms10106)

Wingo, A. P., Almli, L. M., Stevens, J. S., Klengel, T., Uddin, M., Li, Y., Bustamante, A. C., Lori, A., Koen, N., Stein, D. J., Smith, A. K., Aiello, A. E., Koenen, K. C., Wildman, D. E., Galea, S., Bradley, B., Binder, E. B., Jin, P., Gibson, G. & Ressler, K. J. Mar 3 2016 In : Nature Communications. 7, 10958

Research output: Research - peer-reviewComment/debate

Erratum to Episodic diversifying selection shaped the genomes of gibbon ape leukemia virus and related gammaretroviruses [J Virol, 90, 4 (2016) 1757-1772]

Alfano, N., Kolokotronis, S. O., Tsangaras, K., Roca, A. L., Xu, W., Eiden, M. V. & Greenwood, A. D. Apr 1 2016 In : Journal of Virology. 90, 8, p. 4254 1 p.

Research output: Research - peer-reviewComment/debate

Gibbon ape leukemia virus
Gammaretrovirus
genome

Erratum to Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis [BMC Genomics, (2016), 17] DOI: 10.1186/s12864-016-2472-1

Despres, J., Forano, E., Lepercq, P., Comtet-Marre, S., Jubelin, G., Yeoman, C. J., Miller, M. E. B., Fields, C. J., Terrapon, N., Le Bourvellec, C., Renard, C. M. G. C., Henrissat, B., White, B. A. & Mosoni, P. Jun 6 2016 In : BMC Genomics. 17, 1, 426

Research output: Research - peer-reviewComment/debate

Bacteroides
Genomics
Mutagenesis
RNA

Microbiomes, metagenomics, and primate conservation: New strategies, tools, and applications

Stumpf, R. M., Gomez, A., Amato, K. R., Yeoman, C. J., Polk, J. D., Wilson, B. A., Nelson, K. E., White, B. A. & Leigh, S. R. Jul 1 2016 In : Biological Conservation. 199, p. 56-66 11 p.

Research output: Research - peer-reviewComment/debate

Primates
microbiome
primate
monitoring
health

Nanopore Sequencing: Graphene Nanopores for Protein Sequencing (Adv. Funct. Mater. 27/2016)

Wilson, J., Sloman, L., He, Z. & Aksimentiev, A. Jul 19 2016 In : Advanced Functional Materials. 26, 27, p. 4829 1 p.

Research output: Research - peer-reviewComment/debate

sequencing
graphene
proteins
Nanopores
Proteins

Pet scans

Fan, T. M., Le Blanc, A. K. & Mason, N. Apr 1 2016 In : Scientist. 30, 4

Research output: Research - peer-reviewComment/debate

Breeding
Forests
breeding
intraspecific variation

Transgenic bovine as bioreactors: Challenges and perspectives

Monzani, P. S., Adona, P. R., Ohashi, O. M., Meirelles, F. V. & Wheeler, M. B. Apr 1 2016 In : Bioengineered. 7, 3, p. 123-131 9 p.

Research output: Research - peer-reviewComment/debate

Bioreactors
Recombinant Proteins
Recombinant proteins
Milk
Proteins
2015

AAAS annual election: Preliminary announcement

Anderson, J. L., Hockfield, S., Beall, C. M., Berenbaum, M. R., Miranda, M. L., Stuss, D. T., Borchelt, R. E., Clark, A. M., Dunwoody, S., Francisco, J. S., Graham, S. L., Harthorn, B. H., Press, W. H. & Raven, P. H. Sep 25 2015 In : Science. 349, 6255, 1 p.

Research output: Research - peer-reviewComment/debate

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

Yang, X. , Cushman, J. C. , Borland, A. M. , Edwards, E. J. , Wullschleger, S. D. , Tuskan, G. A. , Owen, N. A. , Griffiths, H. , Smith, J. A. C. , De Paoli, H. C. , Weston, D. J. , Cottingham, R. , Hartwell, J. , Davis, S. C. , Silvera, K. , Ming, R. , Schlauch, K. , Abraham, P. , Stewart, J. R. , Guo, H. B. & 31 others Albion, R., Ha, J., Lim, S. D., Wone, B. W. M., Yim, W. C., Garcia, T., Mayer, J. A., Petereit, J., Nair, S. S., Casey, E., Hettich, R. L., Ceusters, J., Ranjan, P., Palla, K. J., Yin, H., Reyes-García, C., Andrade, J. L., Freschi, L., Beltrán, J. D., Dever, L. V., Boxall, S. F., Waller, J., Davies, J., Bupphada, P., Kadu, N., Winter, K., Sage, R. F., Aguilar, C. N., Schmutz, J., Jenkins, J. & Holtum, J. A. M. Jan 1 2015 In : New Phytologist. 207, 3, p. 491-504 14 p.

Research output: Research - peer-reviewComment/debate

Crassulacean acid metabolism
bioenergy
Food
Acids
Research

Correction: A metabolomic and pharmacokinetic study on the mechanism underlying the lipid-lowering effect of orally administered berberine

Gu, S., Cao, B., Sun, R., Tang, Y., Paletta, J. L., Wu, X. L., Liu, L., Zha, W., Zhao, C., Li, Y., Ridlon, J. M., Hylemon, P. B., Zhou, H., Aa, J. & Wang, G. Feb 1 2015 In : Molecular BioSystems. 11, 2, 1 p.

Research output: Research - peer-reviewComment/debate

Berberine
Hypolipidemic Agents
Metabolomics
Oral Administration
Pharmacokinetics

Correction to: Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline Development(PLoS Biol, (2015), 13,8)

Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A. Aug 14 2015 In : PLoS Biology. 13, 8, e1002234

Research output: Research - peer-reviewComment/debate

Planarians
Peptide Hormones
Genome
peptide hormones
germ cells

Documenting bee decline or squandering scarce resources

Tepedino, V. J., Durham, S., Cameron, S. A. & Goodell, K. Feb 1 2015 In : Conservation Biology. 29, 1, p. 280-282 3 p.

Research output: Research - peer-reviewComment/debate

natural resources conservation
Apoidea
pollination
animals
bee
Beryllia
Microfluidics
cells

Erratum: Computational high-resolution optical imaging of the living human retina (Nature Photonics (2015) 9 (440-443))

Shemonski, N. D., South, F. A., Liu, Y. Z., Adie, S. G., Carney, P. S. & Boppart, S. A. Jan 1 2015 In : Nature Photonics. 9, 10, 1 p.

Research output: Research - peer-reviewComment/debate

retina
photonics
high resolution
Imaging techniques

Erratum: Label-free characterization of emerging human neuronal networks (Scientific Reports (2015) 4 (4434) DOI: 10.1038/srep04434)

Mir, M., Kim, T., Majumder, A., Xiang, M., Wang, R., Liu, S. C., Gillette, M. U., Stice, S. & Popescu, G. Jun 30 2015 In : Scientific Reports. 5, 11311

Research output: Research - peer-reviewComment/debate

Erratum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax (Nature Communications (2015) 5 (3966) DOI: 10.1038/ncomms4966)

Fang, X. , Nevo, E. , Han, L. , Levanon, E. Y. , Zhao, J. , Avivi, A. , Larkin, D. , Jiang, X. , Feranchuk, S. , Zhu, Y. , Fishman, A. , Feng, Y. , Sher, N. , Xiong, Z. , Hankeln, T. , Huang, Z. , Gorbunova, V. , Zhang, L. , Zhao, W. , Wildman, D. E. & 33 others Xiong, Y., Gudkov, A., Zheng, Q., Rechavi, G., Liu, S., Bazak, L., Chen, J., Knisbacher, B. A., Lu, Y., Shams, I., Gajda, K., Farré, M., Kim, J., Lewin, H. A., Ma, J., Band, M., Bicker, A., Kranz, A., Mattheus, T., Schmidt, H., Seluanov, A., Azpurua, J., McGowen, M. R., Ben Jacob, E., Li, K., Peng, S., Zhu, X., Liao, X., Li, S., Krogh, A., Zhou, X., Brodsky, L. & Wang, J. Aug 12 2015 In : Nature Communications. 6, 8051

Research output: Research - peer-reviewComment/debate

Spalax
Mole Rats
Communication
Genome
genome

Erratum: Dual suppression of estrogenic and inflammatory activities for targeting of endometriosis (Science Translational Medicine (2015) 7 (274er1))

Zhao, Y., Gong, P., Chen, Y., Nwachukwu, J. C., Srinivasan, S., Ko, C., Bagchi, M. K., Taylor, R. N., Korach, K. S., Nettles, K. W., Katzenellenbogen, J. A. & Katzenellenbogen, B. S. Jan 1 2015 In : Science Translational Medicine. 7, 274

Research output: Research - peer-reviewComment/debate

Translational Medical Research
Endometriosis
Metalloproteases
Fibroblasts
Epithelial Cells

Erratum to optical coherence tomography for the diagnosis and evaluation of human otitis media [J Korean Med Sci 2015; 30: 328-335]

Cho, N. H., Lee, S. H., Jung, W., Jang, J. H., Boppart, S. A. & Kim, J. 2015 In : Journal of Korean Medical Science. 30, 6, p. 834 1 p.

Research output: Research - peer-reviewComment/debate

Optical Coherence Tomography
Otitis Media
Middle Ear
Reproducibility of Results
Sensitivity and Specificity

Expanding the Biology Toolkit

Bertozzi, C., Ge, H., Ma, J. & Milenkovic, O. Dec 3 2015 In : Cell. 163, 6, 1 p.

Research output: Research - peer-reviewComment/debate

Jun-Long Zhang

Zhang, J. L., Che, C. M. & Lu, Y. Jan 1 2015 In : ChemPlusChem. 80, 1, 1 p.

Research output: Research - peer-reviewComment/debate

Leo Philip Kadanoff: Maestro who connected physics on multiple scales

Goldenfeld, N. Dec 1 2015 In : Nature Physics. 11, 12, 1 p.

Research output: Research - peer-reviewComment/debate

physics