Research Output 1960 2018

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Comment/debate
2018

Advancing the ethics of paleogenomics

Bardill, J., Bader, A. C., Garrison, N. A., Bolnick, D. A., Raff, J. A., Walker, A. & Malhi, R. S. Apr 27 2018 In : Science. 360, 6387, p. 384-385 2 p.

Research output: Contribution to journalComment/debate

ForC: a global database of forest carbon stocks and fluxes

Anderson-Teixeira, K. J., Wang, M. M. H., McGarvey, J. C., Herrmann, V., Tepley, A. J., Bond-Lamberty, B. & LeBauer, D. S. Jun 1 2018 In : Ecology. 99, 6, 1 p.

Research output: Contribution to journalComment/debate

carbon sinks
carbon
carbon dioxide
forest mensuration
metadata

Frontiers in alley cropping: Transformative solutions for temperate agriculture

Wolz, K. J., Lovell, S. T., Branham, B. E., Eddy, W. C., Keeley, K., Revord, R. S., Wander, M. M., Yang, W. H. & DeLucia, E. H. Mar 1 2018 In : Global change biology. 24, 3, p. 883-894 12 p.

Research output: Contribution to journalComment/debate

alley cropping
Agriculture
Crops
agriculture
Land use

Using human vision to detect variation in avian coloration: How bad is it?

Bergeron, Z. T. & Fuller, R. C. Feb 1 2018 In : American Naturalist. 191, 2, p. 269-276 8 p.

Research output: Contribution to journalComment/debate

reflectance
plumage
color
ecology
animal
2017

A roadmap for improving the representation of photosynthesis in Earth system models

Rogers, A., Medlyn, B. E., Dukes, J. S., Bonan, G., von Caemmerer, S., Dietze, M. C., Kattge, J., Leakey, A. D. B., Mercado, L. M., Niinemets, Ï., Prentice, I. C., Serbin, S. P., Sitch, S., Way, D. A. & Zaehle, S. Jan 1 2017 In : New Phytologist. 213, 1, p. 22-42 21 p.

Research output: Contribution to journalComment/debate

Photosynthesis
photosynthesis
Carbon Monoxide
Physiological Phenomena
Vapor Pressure

Chaco canyon dig unearths ethical concerns

Claw, K. G., Lippert, D., Bardill, J., Cordova, A., Fox, K., Yracheta, J. M., Bader, A. C., Bolnick, D. A., Malhi, R. S., Tallbear, K. & Garrison, N. A. Jun 1 2017 In : Human biology. 89, 3, p. 177-180 4 p.

Research output: Contribution to journalComment/debate

canyons
North American Indians
American Indians
canyon
Research

Commentary: History of the ribosome and the origin of translation

Caetano-Anollés, D. & Caetano-Anollés, G. Jan 10 2017 In : Frontiers in Molecular Biosciences. 3, JAN, 87

Research output: Contribution to journalComment/debate

Molecular Evolution
Ribosomes
Peer Review
Microfluidics
Embryonic Structures
corrigendum
In Vitro Techniques
Estrogen Receptor
Systems Biology
Molecular Biology
Genomics
Estrogen Receptors

Erratum: Heme Binding Biguanides Target Cytochrome P450-Dependent Cancer Cell Mitochondria (Cell Chemical Biology (2017) 24(10) (1259–1275.e6) (S2451945617302830)(10.1016/j.chembiol.2017.08.009))

Guo, Z. , Sevrioukova, I. F. , Denisov, I. G. , Zhang, X. , Chiu, T. L. , Thomas, D. G. , Hanse, E. A. , Cuellar, R. A. D. , Grinkova, Y. V. , Langenfeld, V. W. , Swedien, D. S. , Stamschror, J. D. , Alvarez, J. , Luna, F. , Galván, A. , Bae, Y. K. , Wulfkuhle, J. D. , Gallagher, R. I. , Petricoin, E. F. , Norris, B. & 17 others Flory, C. M., Schumacher, R. J., O'Sullivan, M. G., Cao, Q., Chu, H., Lipscomb, J. D., Atkins, W. M., Gupta, K., Kelekar, A., Blair, I. A., Capdevila, J. H., Falck, J. R., Sligar, S. G., Poulos, T. L., Georg, G. I., Ambrose, E. & Potter, D. A. Oct 19 2017 In : Cell Chemical Biology. 24, 10, 1 p.

Research output: Contribution to journalComment/debate

Biguanides
Mitochondria
Heme
Cytochrome P-450 Enzyme System
Cell Biology
Peroxisome Proliferator-Activated Receptors
RNA Polymerase II
Adiponectin
Adipocytes
Cell Biology
Zea mays
Breeding
Genome
Manuscripts
Genes

Erratum: "The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species", [Genome Biol. (2016), 17, (192)]

Papanicolaou, A. , Schetelig, M. F. , Arensburger, P. , Atkinson, P. W. , Benoit, J. B. , Bourtzis, K. , Castañera, P. , Cavanaugh, J. P. , Chao, H. , Childers, C. , Curril, I. , Dinh, H. , Doddapaneni, H. V. , Dolan, A. , Dugan, S. , Friedrich, M. , Gasperi, G. , Geib, S. , Georgakilas, G. , Gibbs, R. A. & 45 others Giers, S. D., Gomulski, L. M., González-Guzmán, M., Guillem-Amat, A., Han, Y., Hatzigeorgiou, A. G., Hernández-Crespo, P., Hughes, D. S. T., Jones, J. W., Karagkouni, D., Koskinioti, P., Lee, S. L., Malacrida, A. R., Manni, M., Mathiopoulos, K., Meccariello, A., Munoz-Torres, M., Murali, S. C., Murphy, T. D., Muzny, D. M., Oberhofer, G., Ortego, F., Paraskevopoulou, M. D., Poelchau, M., Qu, J., Reczko, M., Robertson, H. M., Rosendale, A. J., Rosselot, A. E., Saccone, G., Salvemini, M., Savini, G., Schreiner, P., Scolari, F., Siciliano, P., Sim, S. B., Tsiamis, G., Ureña, E., S.Vlachos, I., Werren, J. H., Wimmer, E. A., Worley, K. C., Zacharopoulou, A., Richards, S. & Handler, A. M. Jan 18 2017 In : Genome Biology. 18, 1, 11

Research output: Contribution to journalComment/debate

Ceratitis capitata
Introduced Species
pest species
funding
Publications
Nonequilibrium Statistical Mechanics
Statistical Physics
statistical mechanics
Turbulence
turbulence

Erratum to: Screening wild and semi-free ranging great apes for putative sexually transmitted diseases: Evidence of Trichomonadidae infections ((2015), 10.1002/ajp.22442)

Rushmore, J., Allison, A. B., Edwards, E. E., Bagal, U., Altizer, S., Cranfield, M. R., Glenn, T. C., Liu, H., Mudakikwa, A., Mugisha, L., Muller, M. N., Stumpf, R. M., Thompson, M. E., Wrangham, R. & Yabsley, M. J. Apr 1 2017 In : American Journal of Primatology. 79, 4, p. 1-2 2 p.

Research output: Contribution to journalComment/debate

sexually transmitted disease
sexually transmitted diseases
Pongidae
urine
screening

Erratum to: Notomelia and related neural tube defects in a baby born in Niger: case report and literature review (Childs Nerv Syst, (2017), 33, 529–534, 10.1007/s00381-017-3337-x)

Kelani, A., Moumouni, H., Issa, A., Younsaa, H., Fokou, H., Sani, R., Sanoussi, S., Denholm, L., Beever, J. & Catala, M. Nov 1 2017 In : Child's Nervous System. 33, 11, 1 p.

Research output: Contribution to journalComment/debate

Niger
Neural Tube Defects
Alleles
Mutation
Population

Human milk oligosaccharides: Potent weapons in the battle against rotavirus infection

Donovan, S. M. Sep 1 2017 In : Journal of Nutrition. 147, 9, p. 1605-1606 2 p.

Research output: Contribution to journalComment/debate

Rotavirus Infections
Weapons
Human Milk
Oligosaccharides

RubisCO and the Search for Biomolecular Culprits of Planetary Change

Caetano-Anollés, G. Nov 1 2017 In : BioEssays. 39, 11, 1700174

Research output: Contribution to journalComment/debate

Ribulose-Bisphosphate Carboxylase

The natural productome

Palazzolo, A. M. E., Simons, C. L. W. & Burke, M. D. May 30 2017 In : Proceedings of the National Academy of Sciences of the United States of America. 114, 22, p. 5564-5566 3 p.

Research output: Contribution to journalComment/debate

There is no special sauce: A comment on Beekman and Jordan

Bell, A. M. May 1 2017 In : Behavioral Ecology. 28, 3, p. 626-627 2 p.

Research output: Contribution to journalComment/debate

sauces
Jordan

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

Catchen, J. M., Hohenlohe, P. A., Bernatchez, L., Funk, W. C., Andrews, K. R. & Allendorf, F. W. May 1 2017 In : Molecular ecology resources. 17, 3, p. 362-365 4 p.

Research output: Contribution to journalComment/debate

researchers
Research Personnel
Anecdotes
Genome
Population
2016

2015 Gabriel W. Lasker Award

Malhi, R. S. Sep 1 2016 In : Human biology. 88, 4, 1 p.

Research output: Contribution to journalComment/debate

honors and awards

A Hox-Embedded Long Noncoding RNA: Is It All Hot Air?

Selleri, L., Bartolomei, M. S., Bickmore, W. A., He, L., Stubbs, L., Reik, W. & Barsh, G. S. Dec 1 2016 In : PLoS genetics. 12, 12, e1006485

Research output: Contribution to journalComment/debate

Long Noncoding RNA
RNA
Air
air
non-coding RNA
Erythritol
Mycobacterium smegmatis
Growth temperature
Metabolic Networks and Pathways
threitol

Erratum: DICER1 and microRNA regulation in post-traumatic stress disorder with comorbid depression (Nature Communications (2015) 6 (10106) DOI: 10.1038/ncomms10106)

Wingo, A. P., Almli, L. M., Stevens, J. S., Klengel, T., Uddin, M., Li, Y., Bustamante, A. C., Lori, A., Koen, N., Stein, D. J., Smith, A. K., Aiello, A. E., Koenen, K. C., Wildman, D. E., Galea, S., Bradley, B., Binder, E. B., Jin, P., Gibson, G. & Ressler, K. J. Mar 3 2016 In : Nature Communications. 7, 10958

Research output: Contribution to journalComment/debate

Erratum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons (Nature Genetics (2016) 48 (427-437))

Braasch, I. , Gehrke, A. R. , Smith, J. J. , Kawasaki, K. , Manousaki, T. , Pasquier, J. , Amores, A. , Desvignes, T. , Batzel, P. , Catchen, J. , Berlin, A. M. , Campbell, M. S. , Barrell, D. , Martin, K. J. , Mulley, J. F. , Ravi, V. , Lee, A. P. , Nakamura, T. , Chalopin, D. , Fan, S. & 30 others Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F. E. G., Sun, Y., Hertel, J., Beam, M. J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J. H., Litman, G. W., Litman, R. T., Mikami, M., Ota, T., Saha, N. R., Williams, L., Stadler, P. F., Wang, H., Taylor, J. S., Fontenot, Q., Ferrara, A., Searle, S. M. J., Aken, B., Yandell, M., Schneider, I., Yoder, J. A. & Volff, J. N. Jun 1 2016 In : Nature Genetics. 48, 6, 1 p.

Research output: Contribution to journalComment/debate

Erratum: Random Field Driven Spatial Complexity at the Mott Transition in VO2 (Physical Review Letters (2016) 116 (036401) DOI: 10.1103/PhysRevLett.116.036401)

Liu, S., Phillabaum, B., Carlson, E. W., Dahmen, K. A., Vidhyadhiraja, N. S., Qazilbash, M. M. & Basov, D. N. May 19 2016 In : Physical Review Letters. 116, 20, 209901

Research output: Contribution to journalComment/debate

Erratum: Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp (The ISME Journal (2016) 10, 532; (DOI:10.1038/ismej.2015.252))

Gomez, A., Rothman, J. M., Petrzelkova, K., Yeoman, C. J., Vlckova, K., Umaña, J. D., Carr, M., Modry, D., Todd, A., Torralba, M., Nelson, K. E., Stumpf, R. M., Wilson, B. A., Blekhman, R., White, B. A. & Leigh, S. R. Feb 1 2016 In : ISME Journal. 10, 2, 1 p.

Research output: Contribution to journalComment/debate

Gorilla gorilla
Gorilla
temporal variation
digestive system
diet

Erratum: Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection (Proceedings of the National Academy of Sciences of the United States of America (2015) 112 (14936-14941) DOI 10.1073/pnas.1506226112)

Mesquita, R. D. , Vionette-Amaral, R. J. , Lowenberger, C. , Rivera-Pomar, R. , Monteiro, F. A. , Minx, P. , Spieth, J. , Carvalho, A. B. , Panzera, F. , Lawson, D. , Torres, A. Q. , Ribeiro, J. M. C. , Sorgine, M. H. F. , Waterhouse, R. M. , Montague, M. J. , Abad-Franch, F. , Alves-Bezerra, M. , Amaral, L. R. , Araujo, H. M. , Araujo, R. N. & 30 others Aravind, L., Atella, G. C., Azambuja, P., Berni, M., Bittencourt-Cunha, P. R., Braz, G. R. C., Calderón-Fernández, G., Carareto, C. M. A., Christensen, M. B., Costa, I. R., Costa, S. G., Dansa, M., Daumas-Filho, C. R. O., De-Paula, I. F., Dias, F. A., Dimopoulos, G., Emrich, S. J., Esponda-Behrens, N., Fampa, P., Fernandez-Medina, R. D., Da Fonseca, R. N., Fontenele, M., Fronick, C., Fulton, L. A., Gandara, A. C., Garcia, E. S., Genta, F. A., Giraldo-Calderón, G. I., Gomes, B. & Gondim, K. C. Mar 8 2016 In : Proceedings of the National Academy of Sciences of the United States of America. 113, 10, p. E1415-E1416

Research output: Contribution to journalComment/debate

Erratum to Episodic diversifying selection shaped the genomes of gibbon ape leukemia virus and related gammaretroviruses [J Virol, 90, 4 (2016) 1757-1772]

Alfano, N., Kolokotronis, S. O., Tsangaras, K., Roca, A. L., Xu, W., Eiden, M. V. & Greenwood, A. D. Apr 1 2016 In : Journal of Virology. 90, 8, p. 4254 1 p.

Research output: Contribution to journalComment/debate

Gibbon ape leukemia virus
Gammaretrovirus
genome

Erratum to Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis [BMC Genomics, (2016), 17] DOI: 10.1186/s12864-016-2472-1

Despres, J., Forano, E., Lepercq, P., Comtet-Marre, S., Jubelin, G., Yeoman, C. J., Miller, M. E. B., Fields, C. J., Terrapon, N., Le Bourvellec, C., Renard, C. M. G. C., Henrissat, B., White, B. A. & Mosoni, P. Jun 6 2016 In : BMC Genomics. 17, 1, 426

Research output: Contribution to journalComment/debate

Bacteroides
Genomics
Mutagenesis
RNA

Microbiomes, metagenomics, and primate conservation: New strategies, tools, and applications

Stumpf, R. M., Gomez, A., Amato, K. R., Yeoman, C. J., Polk, J. D., Wilson, B. A., Nelson, K. E., White, B. A. & Leigh, S. R. Jul 1 2016 In : Biological Conservation. 199, p. 56-66 11 p.

Research output: Contribution to journalComment/debate

primate
Primates
microbial communities
monitoring
nutrition physiology

Nanopore Sequencing: Graphene Nanopores for Protein Sequencing (Adv. Funct. Mater. 27/2016)

Wilson, J., Sloman, L., He, Z. & Aksimentiev, A. Jul 19 2016 In : Advanced Functional Materials. 26, 27, p. 4829 1 p.

Research output: Contribution to journalComment/debate

Nanopores
sequencing
Graphene
graphene
proteins

Pet scans

Fan, T. M., Le Blanc, A. K. & Mason, N. Apr 1 2016 In : Scientist. 30, 4

Research output: Contribution to journalComment/debate

Breeding
breeding
Forests
intraspecific variation

Transgenic bovine as bioreactors: Challenges and perspectives

Monzani, P. S., Adona, P. R., Ohashi, O. M., Meirelles, F. V. & Wheeler, M. B. Apr 1 2016 In : Bioengineered. 7, 3, p. 123-131 9 p.

Research output: Contribution to journalComment/debate

Recombinant proteins
Bioreactors
Recombinant Proteins
Milk
Proteins
2015

AAAS annual election: Preliminary announcement

Anderson, J. L., Hockfield, S., Beall, C. M., Berenbaum, M. R., Miranda, M. L., Stuss, D. T., Borchelt, R. E., Clark, A. M., Dunwoody, S., Francisco, J. S., Graham, S. L., Harthorn, B. H., Press, W. H. & Raven, P. H. Sep 25 2015 In : Science. 349, 6255, 1 p.

Research output: Contribution to journalComment/debate

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

Yang, X. , Cushman, J. C. , Borland, A. M. , Edwards, E. J. , Wullschleger, S. D. , Tuskan, G. A. , Owen, N. A. , Griffiths, H. , Smith, J. A. C. , De Paoli, H. C. , Weston, D. J. , Cottingham, R. , Hartwell, J. , Davis, S. C. , Silvera, K. , Ming, R. , Schlauch, K. , Abraham, P. , Stewart, J. R. , Guo, H. B. & 30 others Albion, R., Ha, J., Lim, S. D., Wone, B. W. M., Yim, W. C., Garcia, T., Mayer, J. A., Petereit, J., Nair, S. S., Casey, E., Hettich, R. L., Ceusters, J., Ranjan, P., Palla, K. J., Yin, H., Reyes-García, C., Andrade, J. L., Freschi, L., Beltrán, J. D., Dever, L. V., Boxall, S. F., Waller, J., Davies, J., Bupphada, P., Kadu, N., Winter, K., Sage, R. F., Aguilar, C. N., Schmutz, J. & Jenkins, J. Jan 1 2015 In : New Phytologist. 207, 3, p. 491-504 14 p.

Research output: Contribution to journalComment/debate

Crassulacean acid metabolism
bioenergy
Food
Acids
Research

Correction to: Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline Development(PLoS Biol, (2015), 13,8)

Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A. Aug 14 2015 In : PLoS Biology. 13, 8, e1002234

Research output: Contribution to journalComment/debate

Planarians
peptide hormones
Peptide Hormones
germ cells
Genome

Documenting bee decline or squandering scarce resources

Tepedino, V. J., Durham, S., Cameron, S. A. & Goodell, K. Feb 1 2015 In : Conservation Biology. 29, 1, p. 280-282 3 p.

Research output: Contribution to journalComment/debate

Pollination
Bees
Conservation of Natural Resources
natural resources conservation
pollination
Beryllia
Microfluidics
cells

Erratum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax (Nature Communications (2015) 5 (3966) DOI: 10.1038/ncomms4966)

Fang, X. , Nevo, E. , Han, L. , Levanon, E. Y. , Zhao, J. , Avivi, A. , Larkin, D. , Jiang, X. , Feranchuk, S. , Zhu, Y. , Fishman, A. , Feng, Y. , Sher, N. , Xiong, Z. , Hankeln, T. , Huang, Z. , Gorbunova, V. , Zhang, L. , Zhao, W. , Wildman, D. E. & 30 others Xiong, Y., Gudkov, A., Zheng, Q., Rechavi, G., Liu, S., Bazak, L., Chen, J., Knisbacher, B. A., Lu, Y., Shams, I., Gajda, K., Farré, M., Kim, J., Lewin, H. A., Ma, J., Band, M., Bicker, A., Kranz, A., Mattheus, T., Schmidt, H., Seluanov, A., Azpurua, J., McGowen, M. R., Ben Jacob, E., Li, K., Peng, S., Zhu, X., Liao, X., Li, S. & Krogh, A. Aug 12 2015 In : Nature Communications. 6, 8051

Research output: Contribution to journalComment/debate

Spalax
Mole Rats
genome
rats
communication

Erratum to optical coherence tomography for the diagnosis and evaluation of human otitis media [J Korean Med Sci 2015; 30: 328-335]

Cho, N. H., Lee, S. H., Jung, W., Jang, J. H., Boppart, S. A. & Kim, J. Jan 1 2015 In : Journal of Korean Medical Science. 30, 6, 1 p.

Research output: Contribution to journalComment/debate

Optical Coherence Tomography
Otitis Media
Middle Ear
Reproducibility of Results
Sensitivity and Specificity

Expanding the Biology Toolkit

Bertozzi, C., Ge, H., Ma, J. & Milenkovic, O. Dec 3 2015 In : Cell. 163, 6, 1 p.

Research output: Contribution to journalComment/debate

Jun-Long Zhang

Zhang, J. L., Che, C. M. & Lu, Y. Jan 1 2015 In : ChemPlusChem. 80, 1, 1 p.

Research output: Contribution to journalComment/debate

Leo Philip Kadanoff: Maestro who connected physics on multiple scales

Goldenfeld, N. Dec 1 2015 In : Nature Physics. 11, 12, 1 p.

Research output: Contribution to journalComment/debate

physics

Reply to Cerling et al

White, T. D., Suwa, G. & Ambrose, S. H. Jun 27 2015 In : Current Anthropology. 56, 3, p. 447-448 2 p.

Research output: Contribution to journalComment/debate