Research Output 1973 2020

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2019

A dolomitization event at the oceanic chemocline during the Permian-Triassic transition

Gregg, J. M., Kaczmarek, S. E., Bish, D. L., Machel, H. G. & Fouke, B. W., Jan 1 2019, In : Geology. 47, 7, p. e467-e467

Research output: Contribution to journalComment/debate

Open Access
dolomitization
Permian
Triassic

An interview with Professor Virendra B. Mahesh

Nowak, R. A., Feb 1 2019, In : Biology of reproduction. 100, 2, p. 301-304 4 p.

Research output: Contribution to journalComment/debate

Open Access
Interviews

Author Correction: Increasing CO2 threatens human nutrition (Nature, (2014), 510, 7503, (139-142), 10.1038/nature13179)

Myers, S. S., Zanobetti, A., Kloog, I., Huybers, P., Leakey, A. D. B., Bloom, A. J., Carlisle, E., Dietterich, L. H., Fitzgerald, G., Hasegawa, T., Holbrook, N. M., Nelson, R. L., Ottman, M. J., Raboy, V., Sakai, H., Sartor, K. A., Schwartz, J., Seneweera, S., Tausz, M. & Usui, Y., Oct 17 2019, In : Nature. 574, 7778, p. E14

Research output: Contribution to journalComment/debate

Carbon Dioxide
Manuscripts
Triticum
Emotions
Air

Author Correction: Building a global alliance of biofoundries (Nature Communications, (2019), 10, 1, (2040), 10.1038/s41467-019-10079-2)

Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., Bell, D. J., Feuvre, R. L., Friedman, D. C., Fu, X., Gold, N. D., Herrgård, M. J., Holowko, M. B., Johnson, J. R., Johnson, R. A., Keasling, J. D., Kitney, R. I., Kondo, A., Liu, C., Martin, V. J. J. & 16 others, Menolascina, F., Ogino, C., Patron, N. J., Pavan, M., Poh, C. L., Pretorius, I. S., Rosser, S. J., Scrutton, N. S., Storch, M., Tekotte, H., Travnik, E., Vickers, C. E., Yew, W. S., Yuan, Y., Zhao, H. & Freemont, P. S., Dec 1 2019, In : Nature communications. 10, 1, 3132.

Research output: Contribution to journalComment/debate

Open Access
foundries
Queensland
Foundries
communication
Genome

Author Correction: Targeted exon skipping with AAV-mediated split adenine base editors (Cell Discovery, (2019), 5, 1, (41), 10.1038/s41421-019-0109-7)

Winter, J., Luu, A., Gapinske, M., Manandhar, S., Shirguppe, S., Woods, W. S., Song, J. S. & Perez-Pinera, P., Dec 1 2019, In : Cell Discovery. 5, 1, 56.

Research output: Contribution to journalComment/debate

Open Access
Adenine
Exons
Labeling
Publications

Building a global alliance of biofoundries

Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., Bell, D. J., Le Feuvre, R., Friedman, D. C., Fu, X., Gold, N. D., Herrgård, M. J., Holowko, M. B., Johnson, J. R., Johnson, R. A., Keasling, J. D., Kitney, R. I., Kondo, A., Liu, C., Martin, V. J. J. & 16 others, Menolascina, F., Ogino, C., Patron, N. J., Pavan, M., Poh, C. L., Pretorius, I. S., Rosser, S. J., Scrutton, N. S., Storch, M., Tekotte, H., Travnik, E., Vickers, C. E., Yew, W. S., Yuan, Y., Zhao, H. & Freemont, P. S., Dec 1 2019, In : Nature communications. 10, 1, 2040.

Research output: Contribution to journalComment/debate

Open Access
biotechnology
Biotechnology
organisms
Testing
Research

Commentaries on viewpoint: Rejuvenation of the term sarcopenia

Langer, H. T., Mossakowski, A. A., Baar, K., Alcazar, J., Martin-Rincon, M., Alegre, L. M., Ara, I., Calbet, J. A. L., Hinkley, J. M., Coen, P. M., Irving, B. A., Allerton, T. D., Nair, S., Lima, R. M., Rey-López, J. P., Scott, D., Daly, R. M., Ebeling, P. R., Hayes, A., Tessier, A. J. & 10 others, Chevalier, S., Yates, B. A., Brown, L. A. R., Storer, T. W., Westcott, W. L., Nifli, A. P., Musci, R. V., Konopka, A. R., Hamilton, K. L. & Hepple less, R. T., Jan 1 2019, In : Journal of Applied Physiology. 126, 1, p. 257-262 6 p.

Research output: Contribution to journalComment/debate

Sarcopenia
Rejuvenation

Correction to: Superplastic Formation of Metal Nanostructure Arrays with Ultrafine Gaps (Advanced Materials, (2016), 28, 41, (9152-9162), 10.1002/adma.201602497)

Hu, Y., Xuan, Y., Wang, X., Deng, B., Saei, M., Jin, S., Irudayaraj, J. & Cheng, G. J., Apr 5 2019, In : Advanced Materials. 31, 14, 1900190.

Research output: Contribution to journalComment/debate

Open Access
Nanostructures
Metals
Lasers
Nanoparticles
Ultrafine

Correction to: Genome-wide analysis of the MYB-CC gene family of maize (Genetica, (2019), 147, 1, (1-9), 10.1007/s10709-018-0042-y)

Bai, J., Sun, F., Wang, M., Su, L., Li, R. & Caetano-Anolles, G., Feb 15 2019, In : Genetica. 147, 1, 1 p.

Research output: Contribution to journalComment/debate

Zea mays
Genome
genome
corn
Genes

Four structural variants associated with human-directed sociability in dogs are not found in tame red foxes (Vulpes vulpes)

Bastounes, E. R., Rando, H. M., Johnson, J. L., Trut, L. N., Sacks, B. N., Driscoll, C. A., vonHoldt, B. & Kukekova, A. V., Feb 1 2019, In : Animal genetics. 50, 1, p. 116-118 3 p.

Research output: Contribution to journalComment/debate

Vulpes vulpes
Dogs
dogs

GeoBioMed sheds new light on human kidney stone crystallization and dissolution

Sivaguru, M., Lieske, J. C., Krambeck, A. E. & Fouke, B. W., Jan 1 2019, (Accepted/In press) In : Nature Reviews Urology.

Research output: Contribution to journalComment/debate

Harnessing emerging technologies to reduce Gulf hypoxia

Khanna, M., Gramig, B. M., DeLucia, E. H., Cai, X. & Kumar, P., Oct 1 2019, In : Nature Sustainability. 2, 10, p. 889-891 3 p.

Research output: Contribution to journalComment/debate

hypoxia
Technology
gulf
Hypoxia

Interannual repeatability of eggshell phenotype in individual female common Murres (Uria aalge)

Hauber, M. E., Luro, A., McCarty, C. J., Barateli, K., Cassey, P., Hansen, E. S. & Dale, J., Jan 1 2019, In : Canadian journal of zoology. 97, 4, p. 385-391 7 p.

Research output: Contribution to journalComment/debate

eggshell
egg shell
repeatability
phenotype
egg

Publisher Correction: Scaling of domain cascades in stripe and skyrmion phases (Nature Communications, (2019), 10, 1, (1988), 10.1038/s41467-019-09934-z)

Singh, A., Lee, J. C. T., Avila, K. E., Chen, Y., Montoya, S. A., Fullerton, E. E., Fischer, P., Dahmen, K. A., Kevan, S. D., Sanyal, M. K. & Roy, S., Dec 1 2019, In : Nature communications. 10, 1, 2325.

Research output: Contribution to journalComment/debate

Open Access
document markup languages
HTML
Labels
cascades
communication

Summary on Clinical Aspects of Human Milk on Infant Health Outcomes

Donovan, S. M., Jan 1 2019, In : Nestle Nutrition Institute Workshop Series. 90, p. 175-178 4 p.

Research output: Contribution to journalComment/debate

Human Milk
breast milk
Infant Health
2018

90th Anniversary Commentary: Prebiotics in Infancy for Allergy Prevention: Promising Findings, but No Consensus

Donovan, S. M., Oct 1 2018, In : Journal of Nutrition. 148, 10, p. 1691-1692 2 p.

Research output: Contribution to journalComment/debate

Prebiotics
Anniversaries and Special Events
Hypersensitivity

Advancing the ethics of paleogenomics

Bardill, J., Bader, A. C., Garrison, N. A., Bolnick, D. A., Raff, J. A., Walker, A. & Malhi, R. S., Apr 27 2018, In : Science. 360, 6387, p. 384-385 2 p.

Research output: Contribution to journalComment/debate

Ethics

An interview with Dr Linda C. Giudice

Nowak, R. A., Apr 1 2018, In : Biology of reproduction. 98, 4, p. 437-439 3 p.

Research output: Contribution to journalComment/debate

Interviews

An interview with Dr Patricia A. Martin-DeLeon

Nowak, R. A., Nov 1 2018, In : Biology of reproduction. 99, 5, p. 899-902 4 p.

Research output: Contribution to journalComment/debate

Open Access
Interviews

An interview with Dr R. Michael Roberts

Nowak, R. A., Jan 1 2018, In : Biology of reproduction. 98, 6, p. 739-741 3 p.

Research output: Contribution to journalComment/debate

Interviews

Applying the framework and concepts of parasitology to avian brood parasitism: A comment on Avilés

Abolins-Abols, M. & Hauber, M. E., May 9 2018, In : Behavioral Ecology. 29, 3, p. 520-521 2 p.

Research output: Contribution to journalComment/debate

parasitology
brood parasitism

Correction to: Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines (Advanced Functional Materials, (2018), 28, 23, (1801145), 10.1002/adfm.201801145)

Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Aug 15 2018, In : Advanced Functional Materials. 28, 33, 1804580.

Research output: Contribution to journalComment/debate

walking machines
Functional materials
lists
Fabrication
fabrication

Erratum: Correction: Impaired Mitochondrial Energy Production Causes Light-Induced Photoreceptor Degeneration Independent of Oxidative Stress (PLoS biology (2015) 13 7 (e1002197))

Jaiswal, M., Haelterman, N. A., Sandoval, H., Xiong, B., Donti, T., Kalsotra, A., Yamamoto, S., Cooper, T. A., Graham, B. H. & Bellen, H. J., Mar 1 2018, In : PLoS biology. 16, 3, p. e1002622

Research output: Contribution to journalComment/debate

Open Access
Oxidative stress
photoreceptors
Oxidative Stress
oxidative stress
Light

Erratum: Farming with crops and rocks to address global climate, food and soil security (Nature Plants (2018), DOI: 10.1038/s41477-018-0108-y)

Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., Bird, M., Kantzas, E., Taylor, L. L., Sarkar, B., Kelland, M., Delucia, E. H., Kantola, I., Müller, C., Rau, G. H. & Hansen, J., Jun 1 2018, In : Nature Plants. 4, 6, 1 p.

Research output: Contribution to journalComment/debate

acidification
farming systems
rocks
climate
crops

Erratum: Hyperglucagonemia Mitigates the Effect of Metformin on Glucose Production in Prediabetes (Cell Reports (2016) 15(7) (1394–1400) (S2211124716304375) (10.1016/j.celrep.2016.04.024))

Konopka, A. R., Esponda, R. R., Robinson, M. M., Johnson, M. L., Carter, R. E., Schiavon, M., Cobelli, C., Wondisford, F. E., Lanza, I. R. & Nair, K. S., May 22 2018, In : Cell Reports. 23, 8, 1 p.

Research output: Contribution to journalComment/debate

Prediabetic State
Metformin
Metabolites
Amino Acids
Glucose

Erratum: Correction: Influenza A virus hemagglutinin glycosylation compensates for antibody escape fitness costs (PLoS pathogens (2018) 14 1 (e1006796))

Kosik, I., Ince, W. L., Gentles, L. E., Oler, A. J., Kosikova, M., Angel, M., Magadán, J. G., Xie, H., Brooke, C. B. & Yewdell, J. W., Jun 1 2018, In : PLoS pathogens. 14, 6, p. e1007141

Research output: Contribution to journalComment/debate

Influenza A virus
Hemagglutinins
Glycosylation
Costs and Cost Analysis
Antibodies
Molecular Dynamics Simulation
Molecular Biology
Nanotechnology
DNA
Hand
Research
Stimulus
Vignettes
Research Methods

Erratum to: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. (Nature Genetics, (2018), 50, 11, (1565-1573), 10.1038/s41588-018-0237-2)

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Dec 1 2018, In : Nature Genetics. 50, 12, 1 p.

Research output: Contribution to journalComment/debate

Saccharum
Alleles
Genome
Molecular Sequence Annotation
Databases

Erratum to: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours (Nature Ecology & Evolution, (2018), 2, 9, (1479-1491), 10.1038/s41559-018-0611-6)

Kukekova, A. V., Johnson, J. L., Xiang, X., Feng, S., Liu, S., Rando, H. M., Kharlamova, A. V., Herbeck, Y., Serdyukova, N. A., Xiong, Z., Beklemischeva, V., Koepfli, K. P., Gulevich, R. G., Vladimirova, A. V., Hekman, J. P., Perelman, P. L., Graphodatsky, A. S., O’Brien, S. J., Wang, X., Clark, A. G. & 3 others, Acland, G. M., Trut, L. N. & Zhang, G., Sep 1 2018, In : Nature Ecology and Evolution. 2, 9, 1 p.

Research output: Contribution to journalComment/debate

genome assembly
Vulpes vulpes
cell biology
aggression
genomics

ForC: a global database of forest carbon stocks and fluxes

Anderson-Teixeira, K. J., Wang, M. M. H., McGarvey, J. C., Herrmann, V., Tepley, A. J., Bond-Lamberty, B. & LeBauer, D. S., Jun 2018, In : Ecology. 99, 6, 1 p.

Research output: Contribution to journalComment/debate

carbon sinks
carbon
carbon dioxide
forest mensuration
metadata

Frontiers in alley cropping: Transformative solutions for temperate agriculture

Wolz, K. J., Lovell, S. T., Branham, B. E., Eddy, W. C., Keeley, K., Revord, R. S., Wander, M. M., Yang, W. & Delucia, E. H., Mar 2018, In : Global change biology. 24, 3, p. 883-894 12 p.

Research output: Contribution to journalComment/debate

alley cropping
Agriculture
Crops
Land use
Climate change

Going on offense against the gram-negative defense

Drown, B. S. & Hergenrother, P., Jun 26 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 26, p. 6530-6532 3 p.

Research output: Contribution to journalComment/debate

Interview with Maria Cátira Bortolini, Anthropological Geneticist

Bortolini, M. C., Dominguez, V. R. & Malhi, R. S., Jun 2018, In : American Anthropologist. 120, 2, p. 343-344 2 p.

Research output: Contribution to journalComment/debate

interview

New horizons for future research – Critical issues to consider for maximizing research excellence and impact

Langhans, W., Adan, R., Arnold, M., Banks, W. A., Card, J. P., Dailey, M. J., Daniels, D., de Kloet, A. D., de Lartigue, G., Dickson, S., Fedele, S., Grill, H. J., Jansson, J. O., Kaufman, S., Kolar, G., Krause, E., Lee, S. J., Le Foll, C., Levin, B. E., Lutz, T. A. & 22 others, Mansouri, A., Moran, T. H., Pacheco-López, G., Ramachandran, D., Raybould, H., Rinaman, L., Samson, W. K., Sanchez-Watts, G., Seeley, R. J., Skibicka, K. P., Small, D., Spector, A. C., Tamashiro, K. L., Templeton, B., Trapp, S., Tso, P., Watts, A. G., Weissfeld, N., Williams, D., Wolfrum, C., Yosten, G. & Woods, S. C., Aug 2018, In : Molecular Metabolism. 14, p. 53-59 7 p.

Research output: Contribution to journalComment/debate

Research

Queen pheromones out of context: A comment on Holman

Smith, A. A., Suarez, A. & Liebig, J., Jan 1 2018, In : Behavioral Ecology. 29, 6, 1 p.

Research output: Contribution to journalComment/debate

Open Access
queen pheromones
pheromone

Teaching behavior is responsive and costly in fairy-wrens though the time course needs to be defined

Kleindorfer, S., Hauber, M. E. & Colombelli-Négrel, DI., Jan 1 2018, In : Behavioral Ecology. 29, 1, p. e3-e4

Research output: Contribution to journalComment/debate

Troglodytidae
teaching

Using human vision to detect variation in avian coloration: How bad is it?

Bergeron, Z. T. & Fuller, B. C., Feb 2018, In : American Naturalist. 191, 2, p. 269-276 8 p.

Research output: Contribution to journalComment/debate

reflectance
plumage
color
ecology
animal
2017

A roadmap for improving the representation of photosynthesis in Earth system models

Rogers, A., Medlyn, B. E., Dukes, J. S., Bonan, G., von Caemmerer, S., Dietze, M. C., Kattge, J., Leakey, A. D. B., Mercado, L. M., Niinemets, Ü., Prentice, I. C., Serbin, S. P., Sitch, S., Way, D. A. & Zaehle, S., Jan 1 2017, In : New Phytologist. 213, 1, p. 22-42 21 p.

Research output: Contribution to journalComment/debate

Photosynthesis
photosynthesis
Physiological Phenomena
Vapor Pressure
Carbon Cycle

Chaco canyon dig unearths ethical concerns

Claw, K. G., Lippert, D., Bardill, J., Cordova, A., Fox, K., Yracheta, J. M., Bader, A. C., Bolnick, D. A., Malhi, R. S., Tallbear, K. & Garrison, N. A., Jun 1 2017, In : Human biology. 89, 3, p. 177-180 4 p.

Research output: Contribution to journalComment/debate

canyons
North American Indians
American Indians
canyon
Research

Commentary: History of the ribosome and the origin of translation

Caetano-Anollés, D. & Caetano-Anollés, G., Jan 10 2017, In : Frontiers in Molecular Biosciences. 3, JAN, 87.

Research output: Contribution to journalComment/debate

Comment on Qu et al. 2016

Robertson, H. M., Jan 1 2017, In : Journal of Medical Entomology. 54, 1, p. 1-2 2 p.

Research output: Contribution to journalComment/debate

Peer Review
Microfluidics
Embryonic Structures
corrigendum
In Vitro Techniques

Corrigendum: The 4D nucleome project (Nature (2017) 549 (219-226) DOI: 10.1038/nature23884)

4D Nucleome Network, Dec 14 2017, In : Nature. 552, 7684, 1 p.

Research output: Contribution to journalComment/debate

Open Access
health
director
funding
Estrogen Receptor
Systems Biology
Molecular Biology
Genomics
Estrogen Receptors
Peroxisome Proliferator-Activated Receptors
RNA Polymerase II
Adiponectin
Adipocytes
Cell Biology
Zea mays
Breeding
Genome
Manuscripts
Genes

Erratum: "The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species", [Genome Biol. (2016), 17, (192)]

Papanicolaou, A., Schetelig, M. F., Arensburger, P., Atkinson, P. W., Benoit, J. B., Bourtzis, K., Castañera, P., Cavanaugh, J. P., Chao, H., Childers, C., Curril, I., Dinh, H., Doddapaneni, H. V., Dolan, A., Dugan, S., Friedrich, M., Gasperi, G., Geib, S., Georgakilas, G., Gibbs, R. A. & 45 others, Giers, S. D., Gomulski, L. M., González-Guzmán, M., Guillem-Amat, A., Han, Y., Hatzigeorgiou, A. G., Hernández-Crespo, P., Hughes, D. S. T., Jones, J. W., Karagkouni, D., Koskinioti, P., Lee, S. L., Malacrida, A. R., Manni, M., Mathiopoulos, K., Meccariello, A., Munoz-Torres, M., Murali, S. C., Murphy, T. D., Muzny, D. M., Oberhofer, G., Ortego, F., Paraskevopoulou, M. D., Poelchau, M., Qu, J., Reczko, M., Robertson, H. M., Rosendale, A. J., Rosselot, A. E., Saccone, G., Salvemini, M., Savini, G., Schreiner, P., Scolari, F., Siciliano, P., Sim, S. B., Tsiamis, G., Ureña, E., S.Vlachos, I., Werren, J. H., Wimmer, E. A., Worley, K. C., Zacharopoulou, A., Richards, S. & Handler, A. M., Jan 18 2017, In : Genome biology. 18, 1, 11.

Research output: Contribution to journalComment/debate

Ceratitis capitata
Introduced Species
pest species
funding
Publications

Erratum to: Screening wild and semi-free ranging great apes for putative sexually transmitted diseases: Evidence of Trichomonadidae infections ((2015), 10.1002/ajp.22442)

Rushmore, J., Allison, A. B., Edwards, E. E., Bagal, U., Altizer, S., Cranfield, M. R., Glenn, T. C., Liu, H., Mudakikwa, A., Mugisha, L., Muller, M. N., Stumpf, R. M., Thompson, M. E., Wrangham, R. & Yabsley, M. J., Apr 1 2017, In : American journal of primatology. 79, 4, p. 1-2 2 p.

Research output: Contribution to journalComment/debate

sexually transmitted disease
sexually transmitted diseases
Pongidae
urine
screening