Research Output 1973 2020

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2020

Assessing the transition effects in a drinking water distribution system caused by changing supply water quality: an indirect approach by characterizing suspended solids

Chen, L., Ling, F., Bakker, G., Liu, W. T., Medema, G., van der Meer, W. & Liu, G., Jan 1 2020, In : Water Research. 168, 115159.

Research output: Contribution to journalArticle

Open Access
Water distribution systems
Potable water
Water quality
drinking water
water quality

Effects of nitrogenous substances on heat transfer fouling using model thin stillage fluids

You, J., Johnston, D. B., Dien, B. S., Singh, V., Engeseth, N. J., Tumbleson, M. E. & Rausch, K. D., Jan 2020, In : Food and Bioproducts Processing. 119, p. 125-132 8 p.

Research output: Contribution to journalArticle

fouling
Fouling
heat transfer
Peptide Hydrolases
Hot Temperature

In-situ graft-polymerization modification of commercial ultrafiltration membranes for long-term fouling resistance in a pilot-scale membrane bioreactor

Straub, A. P., Asa, E., Zhang, W., Nguyen, T. H. & Herzberg, M., Feb 15 2020, In : Chemical Engineering Journal. 382, 122865.

Research output: Contribution to journalArticle

Ultrafiltration
Fouling
ultrafiltration
Bioreactors
polymerization

Temperature rises during strain-rate dependent avalanches in bulk metallic glasses

Li, J. J., Fan, J. F., Wang, Z., Wu, Y. C., Dahmen, K. A. & Qiao, J. W., Jan 2020, In : Intermetallics. 116, 106637.

Research output: Contribution to journalArticle

Metallic glass
Strain rate
Temperature
Heating
Shear bands
2019

13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study

Jeon, S., Li, Q., Rubakhin, S., Sweedler, J. V., Smith, J. W., Neuringer, M., Kuchan, M. & Erdman, J. W., Jan 2019, In : Nutrition Research. 61, p. 102-108 7 p.

Research output: Contribution to journalArticle

Lutein
Macaca mulatta
Oral Administration
Tissue Distribution
Haplorhini

7 Log Virus Removal in a Simple Functionalized Sand Filter

Samineni, L., Xiong, B., Chowdhury, R., Pei, A., Kuehster, L., Wang, H., Dickey, R., Soto, P. E., Massenburg, L., Nguyen, T. H., Maranas, C., Velegol, D., Kumar, M. & Velegol, S., Nov 5 2019, In : Environmental Science and Technology. 53, 21, p. 12706-12714 9 p.

Research output: Contribution to journalArticle

Viruses
virus
Sand
filter
sand

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C. J., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access
global perspective
fossil fuel
seasonality
vegetation
carbon

A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data

Dinh, H. V., Suthers, P. F., Chan, S. H. J., Shen, Y., Xiao, T., Deewan, A., Jagtap, S. S., Zhao, H., Rao, C. V., Rabinowitz, J. D. & Maranas, C. D., Dec 2019, In : Metabolic Engineering Communications. 9, e00101.

Research output: Contribution to journalArticle

Open Access
Genomics
Genes
Yeasts
Genome
Basidiomycota

A computational model of feedback-mediated hematopoietic stem cell differentiation in vitro

Mahadik, B., Hannon, B. & Harley, B. A. C., Mar 2019, In : PloS one. 14, 3, e0212502.

Research output: Contribution to journalArticle

Open Access
Hematopoietic Stem Cells
Stem cells
cell differentiation
Cell Differentiation
Feedback

A Confocal Reflection Super-Resolution Technique to Image Golgi-Cox Stained Neurons

Sivaguru, M., Khaw, Y. M. & Inoue, M., Aug 2019, In : Journal of Microscopy. 275, 2, p. 115-130 16 p.

Research output: Contribution to journalArticle

Staining and Labeling
Neurons
Light
Dendritic Spines
Central Nervous System Diseases

A continuing career in biocatalysis: Frances H. Arnold

Fasan, R., Jennifer Kan, S. B. & Zhao, H., Nov 1 2019, In : ACS Catalysis. 9, 11, p. 9775-9788 14 p.

Research output: Contribution to journalArticle

Enzymes
Biocatalysts
Catalysis
Biocatalysis
glucokinase
Glucokinase
Anthocyanins
Medical problems
phenolic acids

Activation of silent biosynthetic gene clusters using transcription factor decoys

Wang, B., Guo, F., Dong, S. H. & Zhao, H., Feb 1 2019, In : Nature chemical biology. 15, 2, p. 111-114 4 p.

Research output: Contribution to journalArticle

Multigene Family
Transcription Factors
Oxazoles
Peptide Synthases
Polyketide Synthases

Active feminization of the preoptic area occurs independently of the gonads in Amphiprion ocellaris

Dodd, L. D., Nowak, E., Lange, D., Parker, C. G., DeAngelis, R., Gonzalez, J. A. & Rhodes, J. S., Jun 2019, In : Hormones and Behavior. 112, p. 65-76 12 p.

Research output: Contribution to journalArticle

Feminization
Preoptic Area
Gonads
Steroids
Sexual Development
Ciprofloxacin
Escherichia coli
antibiotic resistance
Microfluidics
experiment
Model reference adaptive control
Model predictive control
Clustering algorithms
Rocks
Uncertainty

A direct effect of the autonomic nervous system on somatic stem cell proliferation?

Davis, E. A. & Dailey, M. J., Jan 2019, In : American Journal of Physiology - Regulatory Integrative and Comparative Physiology. 316, 1, p. R1-R5

Research output: Contribution to journalArticle

Adult Stem Cells
Autonomic Nervous System
Cell Proliferation
Stem Cells
Epithelial Cells

Adolescent impulsivity as a sex-dependent and subtype-dependent predictor of impulsivity, alcohol drinking and dopamine D 2 receptor expression in adult rats

Hammerslag, L. R., Belagodu, A. P., Aladesuyi Arogundade, O. A., Karountzos, A. G., Guo, Q., Galvez, R., Roberts, B. W. & Gulley, J. M., Mar 2019, In : Addiction Biology. 24, 2, p. 193-205 13 p.

Research output: Contribution to journalArticle

Impulsive Behavior
Alcohol Drinking
Dopamine
Substance-Related Disorders
Saccharin

Adopting bioenergy crops: Does farmers’ attitude toward loss matter?

Anand, M., Miao, R. & Khanna, M., Jul 2019, In : Agricultural Economics (United Kingdom). 50, 4, p. 435-450 16 p.

Research output: Contribution to journalArticle

farmers' attitudes
energy crops
Miscanthus
Panicum virgatum
farmers

A gelatin hydrogel to study endometrial angiogenesis and trophoblast invasion

Zambuto, S. G., Clancy, K. B. H. & Harley, B. A., Oct 6 2019, In : Interface Focus. 9, 5, 20190016.

Research output: Contribution to journalArticle

Hydrogel
Endothelial cells
Trophoblasts
Gelatin
Hydrogels

A gene cluster for taurine sulfur assimilation in an anaerobic human gut bacterium

Xing, M., Wei, Y., Hua, G., Li, M., Nanjaraj Urs, A. N., Wang, F., Hu, Y., Zhai, W., Liu, Y., Ang, E. L., Zhao, H. & Zhang, Y., Aug 15 2019, In : Biochemical Journal. 476, 15, p. 2271-2279 9 p.

Research output: Contribution to journalArticle

Taurine
Multigene Family
Sulfur
Bacteria
Genes

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling

Schmidt, J. E., Kent, A. D., Brisson, V. L. & Gaudin, A. C. M., Nov 7 2019, In : Microbiome. 7, 1, 146.

Research output: Contribution to journalArticle

Open Access
Rhizosphere
Nitrogen
Soil
Microbiota
Zea mays

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A., Bunikis, I., Pettersson, O. V., Mosbech, M. B., Childers, A. K., Evans, J. D., Mikheyev, A. S., Robertson, H. M., Robinson, G. E. & Webster, M. T., Apr 8 2019, In : BMC genomics. 20, 1, 275.

Research output: Contribution to journalArticle

Open Access
Bees
Chromosomes
Chromosome Mapping
Genome
Genomic Structural Variation

Allele-specific enhancer interaction at the Peg3 imprinted domain

Kim, J., Frey, W. D., Sharma, K., Ghimire, S., Teruyama, R. & Stubbs, L., Jan 1 2019, In : PloS one. 14, 10, e0224287.

Research output: Contribution to journalArticle

Open Access
Conformations
Brain
Animals
Genes
Alleles

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy

A Mouse Mutation That Dysregulates Neighboring Galnt17 and Auts2 Genes Is Associated with Phenotypes Related to the Human AUTS2 Syndrome

Weisner, P. A., Chen, C. Y., Sun, Y., Yoo, J., Kao, W. C., Zhang, H., Baltz, E. T., Troy, J. M. & Stubbs, L., Nov 5 2019, In : G3 (Bethesda, Md.). 9, 11, p. 3891-3906 16 p.

Research output: Contribution to journalArticle

Open Access
Homozygote
Phenotype
Mutation
N-Acetylgalactosaminyltransferases
Pathology

Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., Bousquet, J., Khasa, D. & Van Damme, P., Dec 1 2019, In : Genetic Resources and Crop Evolution. 66, 8, p. 1653-1669 17 p.

Research output: Contribution to journalArticle

Sapindaceae
Litchi
Litchi chinensis
Vietnam
Microsatellite Repeats

Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador

Zurita, M. F., Cárdenas, P. A., Sandoval, M. E., Peña, M. C., Fornasini, M., Flores, N., Monaco, M. H., Berding, K., Donovan, S. M., Kuntz, T., Gilbert, J. A. & Baldeón, M. E., Jan 1 2019, (Accepted/In press) In : Gut Microbes.

Research output: Contribution to journalArticle

Ecuador
Nutritional Status
Case-Control Studies
Ruminococcus
Bacteroides

Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer

Woodburn, E. V., Long, K. D. & Cunningham, B. T., Jan 15 2019, In : IEEE Sensors Journal. 19, 2, p. 508-514 7 p., 8494768.

Research output: Contribution to journalArticle

Smartphones
Spectrometers
Assays
strip
Cameras

Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S. & Schroeder, H., May 2019, In : Journal of Archaeological Science. 105, p. 11-18 8 p.

Research output: Contribution to journalArticle

genetic test
slave
nicotine
artifact
nineteenth century

Ancient DNA reveals a multistep spread of the first herders into sub-Saharan Africa

Prendergast, M. E., Lipson, M., Sawchuk, E. A., Olalde, I., Ogola, C. A., Rohland, N., Sirak, K. A., Adamski, N., Bernardos, R., Broomandkhoshbacht, N., Callan, K., Culleton, B. J., Eccles, L., Harper, T. K., Lawson, A. M., Mah, M., Oppenheimer, J., Stewardson, K., Zalzala, F., Ambrose, S. H. & 13 others, Ayodo, G., Gates, H. L., Gidna, A. O., Katongo, M., Kwekason, A., Mabulla, A. Z. P., Mudenda, G. S., Ndiema, E. K., Nelson, C., Robertshaw, P., Kennett, D. J., Manthi, F. K. & Reich, D., Jul 5 2019, In : Science. 365, 6448, eaaw6275.

Research output: Contribution to journalArticle

Iron Age
DNA
Stone Age
food production
genetic differentiation

An evaluation of primers for detecting denitrifiers via their functional genes

Ma, Y., Zilles, J. & Kent, A. D., Apr 2019, In : Environmental Microbiology. 21, 4, p. 1196-1210 15 p.

Research output: Contribution to journalArticle

Denitrification
denitrification
Ecology
functional group
gene

An Exploratory Look at the Role of Childcare Providers as a Support and Resource for Breastfeeding Mothers

Lundquist, A., McBride, B. A., Donovan, S. M. & Kieffer, A., Jun 2019, In : Breastfeeding Medicine. 14, 5, p. 313-319 7 p.

Research output: Contribution to journalArticle

Breast Feeding
Mothers
Education
Foster Home Care
Mental Competency

An extended bacterial reductive pyrimidine degradation pathway that enables nitrogen release from β-alanine

Yin, J., Wei, Y., Liu, D., Hu, Y., Lu, Q., Lui Ang, E., Zhao, H. & Zhang, Y., Jan 1 2019, In : Journal of Biological Chemistry. 294, 43, p. 15662-15671 10 p.

Research output: Contribution to journalArticle

Alanine
Nitrogen
Degradation
Bacteria
Uracil

An extended regulatory landscape drives Tbx18 activity in a variety of prostate-associated cell lineages

Negi, S., Bolt, C. C., Zhang, H. & Stubbs, L. J., Feb 15 2019, In : Developmental Biology. 446, 2, p. 180-192 13 p.

Research output: Contribution to journalArticle

Cell Lineage
Chromatin
Prostate
Essential Genes
Ureter

An extra copy of the β-glucosidase gene improved the cellobiose fermentation capability of an engineered Saccharomyces cerevisiae strain

Kim, H. J., Lee, W. H., Turner, T. L., Kwak, S. & Jin, Y. S., Oct 1 2019, In : 3 Biotech. 9, 10, 367.

Research output: Contribution to journalArticle

Glucosidases
Cellobiose
cellobiose
glucosidases
Fermentation

A NIR Light Gated DNA Nanodevice for Spatiotemporally Controlled Imaging of MicroRNA in Cells and Animals

Zhao, J., Chu, H., Zhao, Y., Lu, Y. & Li, L., May 1 2019, In : Journal of the American Chemical Society. 141, 17, p. 7056-7062 7 p.

Research output: Contribution to journalArticle

MicroRNAs
Animals
DNA
Imaging techniques
Light

A novel synthesis of trans-unsaturated fatty acids by the Gram-positive commensal bacterium Enterococcus faecalis FA2-2

Kondakova, T., Kumar, S. & Cronan, J. E., Aug 2019, In : Chemistry and Physics of Lipids. 222, p. 23-35 13 p.

Research output: Contribution to journalArticle

Trans Fatty Acids
Enterococcus faecalis
Gram-Positive Bacteria
Unsaturated Fatty Acids
Bacteria

Antarctic blackfin icefish genome reveals adaptations to extreme environments

Kim, B. M., Amores, A., Kang, S., Ahn, D. H., Kim, J. H., Kim, I. C., Lee, J. H., Lee, S. G., Lee, H., Lee, J., Kim, H. W., Desvignes, T., Batzel, P., Sydes, J., Titus, T., Wilson, C. A., Catchen, J. M., Warren, W. C., Schartl, M., Detrich, H. W. & 2 others, Postlethwait, J. H. & Park, H., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 469-478 10 p.

Research output: Contribution to journalArticle

genome
gene
genes
ice damage
biological rhythm

Anti-parasitic egg rejection by great reed warblers (Acrocephalus arundinaceus) tracks differences along an eggshell color gradient

Abolins-Abols, M., Hanley, D., Moskát, C., Grim, T. & Hauber, M. E., Sep 2019, In : Behavioural Processes. 166, 103902.

Research output: Contribution to journalArticle

Egg Shell
Songbirds
egg shell
Eggs
Ovum

A pathway for isethionate dissimilation in Bacillus krulwichiae

Tong, Y., Wei, Y., Hu, Y., Ang, E. L., Zhao, H. & Zhang, Y., Jan 1 2019, In : Applied and environmental microbiology. 85, 15, e00793-19.

Research output: Contribution to journalArticle

Bacillus (bacteria)
Bacillus
Bacteria
bacterium
bacteria

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

physical models
surface temperature
land surface
Mean square error
Temperature

Applications of a class of Herglotz operator pencils

Barreiro, A. K., Bronski, J. C. & Rapti, Z., Jan 1 2019, In : SIAM Journal on Mathematical Analysis. 51, 1, p. 256-275 20 p.

Research output: Contribution to journalArticle

Operator Pencil
Eigenvalue
Eigenvalues and eigenfunctions
Oscillation
Accumulation point
Vehicle suspensions
Systems engineering
Dynamic models

Architecture-Controlled Ring-Opening Polymerization for Dynamic Covalent Poly(disulfide)s

Liu, Y., Jia, Y., Wu, Q. & Moore, J. S., Jan 1 2019, In : Journal of the American Chemical Society. 141, 43, p. 17075-17080 6 p.

Research output: Contribution to journalArticle

Ring opening polymerization
polymerization
Polymerization
Disulfides
Polymers
maize
corn
vapor pressure
water
water use efficiency

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access
maize
corn
vapor pressure
water
water use efficiency

A rotifer-derived paralytic compound prevents transmission of schistosomiasis to a mammalian host

Gao, J., Yang, N., Lewis, F. A., Yau, P., Collins, J. J., Sweedler, J. V. & Newmark, P. A., Jan 1 2019, In : PLoS biology. 17, 10, e3000485.

Research output: Contribution to journalArticle

Open Access
schistosomiasis
Schistosoma
Schistosomiasis
Rotifera
Cercaria

ASAP: Accelerated Short-Read Alignment on Programmable Hardware

Banerjee, S. S., El-Hadedy, M., Lim, J. B., Kalbarczyk, Z. T., Chen, D., Lumetta, S. S. & Iyer, R. K., Mar 1 2019, In : IEEE Transactions on Computers. 68, 3, p. 331-346 16 p., 8490591.

Research output: Contribution to journalArticle

Alignment
Edit Distance
Hardware
kernel
Field Programmable Gate Array

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

autopolyploidy
alleles
genome
chromosomes
diploidy