Research Output 1960 2018

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2018

Colorimetric imaging of layer-by-layer molecular deposition on nanoplasmonic lycurgus cup array

Hu, Y., Ameen, A., Hsiao, A. & Liu, G. L. Jan 1 2018 In : Sensors and Actuators, B: Chemical. 254, p. 827-833 7 p.

Research output: Research - peer-reviewArticle

Imaging techniques
sensors
molecules
Molecules
Sensors

Distribution comparison and risk assessment of free-floating and particle-attached bacterial pathogens in urban recreational water: Implications for water quality management

Fang, T., Cui, Q., Huang, Y., Dong, P., Wang, H., Liu, W. T. & Ye, Q. Feb 1 2018 In : Science of the Total Environment. 613-614, p. 428-438 11 p.

Research output: Research - peer-reviewArticle

risk assessment
pathogen
water
distribution
particle

Effects of controlled germination on selected physicochemical and functional properties of whole-wheat flour and enhanced γ-aminobutyric acid accumulation by ultrasonication

Ding, J., Hou, G. G., Nemzer, B. V., Xiong, S., Dubat, A. & Feng, H. Mar 15 2018 In : Food Chemistry. 243, p. 214-221 8 p.

Research output: Research - peer-reviewArticle

whole wheat flour
gamma-aminobutyric acid
functional properties
physicochemical properties
germination

Enhancement of gama-aminobutyric acid (GABA) and other health-related metabolites in germinated red rice (Oryza sativa L.) by ultrasonication

Ding, J., Ulanov, A. V., Dong, M., Yang, T., Nemzer, B. V., Xiong, S., Zhao, S. & Feng, H. Jan 1 2018 In : Ultrasonics Sonochemistry. 40, p. 791-797 7 p.

Research output: Research - peer-reviewArticle

metabolites
rice
health
acids
augmentation

FKBP5 DNA methylation does not mediate the association between childhood maltreatment and depression symptom severity in the Detroit Neighborhood Health Study

Bustamante, A. C., Aiello, A. E., Guffanti, G., Galea, S., Wildman, D. E. & Uddin, M. Jan 1 2018 In : Journal of Psychiatric Research. 96, p. 39-48 10 p.

Research output: Research - peer-reviewArticle

DNA Methylation
Health
Gene Expression
Genes
Response Elements

Integrated spectroscopic analysis system with low vertical height for measuring liquid or solid assays

Wan, Y., Carlson, J. A., Al-Mulla, S. A., Peng, W., Long, K. D., Kesler, B. A., Su, P., Dallesasse, J. M. & Cunningham, B. T. Feb 1 2018 In : Sensors and Actuators, B: Chemical. 255, p. 935-943 9 p.

Research output: Research - peer-reviewArticle

spectroscopic analysis
liquids
Spectroscopic analysis
Liquids
Assays
2017

3D-Printed pHEMA Materials for Topographical and Biochemical Modulation of Dorsal Root Ganglion Cell Response

Badea, A., McCracken, J. M., Tillmaand, E. G., Kandel, M. E., Oraham, A. W., Mevis, M. B., Rubakhin, S. S., Popescu, G., Sweedler, J. V. & Nuzzo, R. G. Sep 13 2017 In : ACS Applied Materials and Interfaces. 9, 36, p. 30318-30328 11 p.

Research output: Research - peer-reviewArticle

Cell growth
Modulation
Lysine
hydroxyethyl methacrylate
Cells

3D Printed Stem-Cell-Laden, Microchanneled Hydrogel Patch for the Enhanced Release of Cell-Secreting Factors and Treatment of Myocardial Infarctions

Melhem, M. R., Park, J., Knapp, L., Reinkensmeyer, L., Cvetkovic, C., Flewellyn, J., Lee, M. K., Jensen, T. W., Bashir, R., Kong, H. & Schook, L. B. Sep 11 2017 In : ACS Biomaterials Science and Engineering. 3, 9, p. 1980-1987 8 p.

Research output: Research - peer-reviewArticle

Hydrogel
Stem cells
Gels
Hydrogels
Microchannels

5-HT2C Agonists Modulate Schizophrenia-Like Behaviors in Mice

Pogorelov, V. M., Rodriguiz, R. M., Cheng, J., Huang, M., Schmerberg, C. M., Meltzer, H. Y., Roth, B. L., Kozikowski, A. P. & Wetsel, W. C. Apr 12 2017 (Accepted/In press) In : Neuropsychopharmacology.

Research output: Research - peer-reviewArticle

Serotonin
Schizophrenia
Antipsychotic Agents
Dopamine
Amphetamine

A brief assessment tool for investigating facets of moral judgment from realistic vignettes

Kruepke, M., Molloy, E. K., Bresin, K., Barbey, A. K. & Verona, E. 2017 In : Behavior Research Methods.

Research output: Research - peer-reviewArticle

A brief assessment tool for investigating facets of moral judgment from realistic vignettes

Kruepke, M., Molloy, E. K., Bresin, K., Barbey, A. K. & Verona, E. Jun 23 2017 (Accepted/In press) In : Behavior Research Methods. p. 1-15 15 p.

Research output: Research - peer-reviewArticle

Vignettes
Moral Judgment
Assessment Tools
Rating
Stimulus

A comparative genome analysis of Cercospora sojina with other members of the pathogen genus Mycosphaerella on different plant hosts

Zeng, F., Lian, X., Zhang, G., Yu, X., Bradley, C. A. & Ming, R. Sep 1 2017 In : Genomics Data. 13, p. 54-63 10 p.

Research output: Research - peer-reviewArticle

Pathogens
Genes
Genome
Fungi
Virulence

A comparative study of anthocyanin distribution in purple and blue corn coproducts from three conventional fractionation processes

Li, Q., Somavat, P., Singh, V., Chatham, L. & Gonzalez de Mejia, E. Sep 15 2017 In : Food Chemistry. 231, p. 332-339 8 p.

Research output: Research - peer-reviewArticle

coproducts
anthocyanins
fractionation
corn
Anthocyanins

Adolescent depression linked to socioeconomic status? Molecular approaches for revealing premorbid risk factors

Uddin, M., Jansen, S. & Telzer, E. H. Mar 1 2017 In : BioEssays. 39, 3, 1600194

Research output: Research - peer-reviewArticle

Social Class
Depression
Environmental Exposure
Epigenomics
Mental Disorders

A dynamic regression analysis tool for quantitative assessment of bacterial growth written in Python

Hoeflinger, J. L., Hoeflinger, D. E. & Miller, M. J. Jan 1 2017 In : Journal of Microbiological Methods. 132, p. 83-85 3 p.

Research output: Research - peer-reviewArticle

Boidae
Regression Analysis
Growth
Lactobacillus
Carbohydrates

Aerobic fitness, hippocampal viscoelasticity, and relational memory performance

Barbey, A. K. Mar 30 2017 In : NeuroImage. p. 179-188

Research output: Research - peer-reviewArticle

Open Access
Young Adult
Individuality
Health
Cognition
Elasticity Imaging Techniques

A functional endonuclease Q exists in the bacterial domain: Identification and characterization of endonuclease Q from Bacillus pumilus

Shiraishi, M., Ishino, S., Cann, I. & Ishino, Y. 2017 In : Bioscience, Biotechnology and Biochemistry. 81, 5, p. 931-937 7 p.

Research output: Research - peer-reviewArticle

Endonucleases
Bacillus pumilus
Repair
Archaea
DNA

A Group-Specific Recommender System

Bi, X., Qu, A., Wang, J. & Shen, X. Jul 3 2017 In : Journal of the American Statistical Association. 112, 519, p. 1344-1353 10 p.

Research output: Research - peer-reviewArticle

Recommender Systems
Recommender systems
Backfitting Algorithm
Alternating Least Squares
Competitive System

A high-throughput cell microarray platform for correlative analysis of cell differentiation and traction forces

Kaylan, K. B., Kourouklis, A. P. & Underhill, G. H. Mar 1 2017 In : Journal of Visualized Experiments. 2017, 121, e55362

Research output: Research - peer-reviewArticle

Traction
Cell Differentiation
Microarrays
Throughput
Hydrogel

Alkyl Phosphite Inhibitors for Frontal Ring-Opening Metathesis Polymerization Greatly Increase Pot Life

Robertson, I. D., Dean, L. M., Rudebusch, G. E., Sottos, N. R., White, S. R. & Moore, J. S. Jun 20 2017 In : ACS Macro Letters. 6, 6, p. 609-612 4 p.

Research output: Research - peer-reviewArticle

Ring opening polymerization
Polymers
Catalysts
Ruthenium
Thermosets

Allocation, not male resistance, increases male frequency during epidemics: a case study in facultatively sexual hosts

Hite, J. L., Penczykowski, R. M., Shocket, M. S., Griebel, K. A., Strauss, A. T., Duffy, M. A., Cáceres, C. E. & Hall, S. R. Nov 1 2017 In : Ecology. 98, 11, p. 2773-2783 11 p.

Research output: Research - peer-reviewArticle

case studies
allocation
gender
demographic statistics
parasites

Alternating Rabacfosadine/Doxorubicin: Efficacy and Tolerability in Naïve Canine Multicentric Lymphoma

Thamm, D. H., Vail, D. M., Post, G. S., Fan, T. M., Phillips, B. S., Axiak-Bechtel, S., Elmslie, R. S., Klein, M. K. & Ruslander, D. A. May 1 2017 In : Journal of Veterinary Internal Medicine. 31, 3, p. 872-878 7 p.

Research output: Research - peer-reviewArticle

Doxorubicin
Canidae
Lymphoma
Dogs
doxorubicin

A method to estimate cadaveric femur cortical strains during fracture testing using digital image correlation

Rossman, T., Uthamaraj, S., Rezaei, A., McEligot, S., Giambini, H., Jasiuk, I., Yaszemski, M. J., Lu, L. & Dragomir-Daescu, D. Sep 14 2017 In : Journal of Visualized Experiments. 2017, 127, e54942

Research output: Research - peer-reviewArticle

Femur
Fracture testing
Finite Element Analysis
Paint
Thigh

A modular approach to the design, fabrication, and characterization of muscle-powered biological machines

Raman, R., Cvetkovic, C. & Bashir, R. Mar 1 2017 In : Nature Protocols. 12, 3, p. 519-533 15 p.

Research output: Research - peer-reviewArticle

Skeleton
Muscles
Muscle
Actuators
Bioengineering

Analysis and diagnosis of SLA violations in a production SaaS cloud

Di Martino, C., Sarkar, S., Ganesan, R., Kalbarczyk, Z. T. & Iyer, R. K. Mar 1 2017 In : IEEE Transactions on Reliability. 66, 1, p. 54-75 22 p., 7835304

Research output: Research - peer-reviewArticle

Availability
Industry

Ancestral resurrection of anthropoid estrogen receptor β demonstrates functional consequences of positive selection

Weckle, A., McGowen, M. R., Xing, J., Chen, C., Sterner, K. N., Hou, Z. C., Romero, R. & Wildman, D. E. 2017 (Accepted/In press) In : Molecular Phylogenetics and Evolution.

Research output: Research - peer-reviewArticle

Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity

Lindo, J., Achilli, A., Perego, U. A., Archer, D., Valdiosera, C., Petzelt, B., Mitchell, J., Worl, R., Dixon, E. J., Fifield, T. E., Rasmussen, M., Willerslev, E., Cybulski, J. S., Kemp, B. M., DeGiorgio, M. & Malhi, R. S. Apr 18 2017 In : Proceedings of the National Academy of Sciences of the United States of America. 114, 16, p. 4093-4098 6 p.

Research output: Research - peer-reviewArticle

coast
Pleistocene
genome
Americas
population structure

Androgen receptor in the ovary theca cells plays a critical role in androgen-induced reproductive dysfunction

Ma, Y., Andrisse, S., Chen, Y., Childress, S., Xue, P., Wang, Z., Jones, D., Ko, C., Divall, S. & Wu, S. Jan 1 2017 In : Endocrinology. 158, 1, p. 98-108 11 p.

Research output: Research - peer-reviewArticle

Theca Cells
Dihydrotestosterone
Androgen Receptors
Androgens
Ovary
Chemical reactions
Crystals
Students
Photodetectors
Reaction rates
Trifluoperazine
Calmodulin
Fatty Acids
Escherichia coli
Lipids

AN EMPIRICAL STUDY OF THE IMPACT OF THE RENEWABLE FUEL STANDARD (RFS) ON THE PRODUCTION OF FUEL ETHANOL IN THE U.S.

Kesan, J. P., Yang, H. & Peres, I. F. Jan 1 2017 In : Utah Law Review OnLaw. 2017, 1, p. 159-206 48 p.

Research output: Research - peer-reviewArticle

A new developmental mechanism for the separation of the mammalian middle ear ossicles from the jaw

Urban, D. J., Anthwal, N., Luo, Z. X., Maier, J. A., Sadier, A., Tucker, A. S. & Sears, K. E. Feb 8 2017 In : Proceedings of the Royal Society B: Biological Sciences. 284, 1848, 20162416

Research output: Research - peer-reviewArticle

Ear Ossicles
Middle Ear
Jaw
Cartilage
jaws

A new genome-mining tool redefines the lasso peptide biosynthetic landscape

Tietz, J. I., Schwalen, C. J., Patel, P. S., Maxson, T., Blair, P. M., Tai, H. C., Zakai, U. I. & Mitchell, D. A. May 1 2017 In : Nature Chemical Biology. 13, 5, p. 470-478 9 p.

Research output: Research - peer-reviewArticle

Genome
Peptides
alachlor
Citrulline
Data Mining
dry milling
flaking
coproducts
corn
cultivars

A new mammalian model system for thalidomide teratogenesis: Monodelphis domestica

Sorensen, D., Sackett, A., Urban, D. J., Maier, J., Vargesson, N. & Sears, K. E. Jun 1 2017 In : Reproductive Toxicology. 70, p. 126-132 7 p.

Research output: Research - peer-reviewArticle

Monodelphis
Teratogenesis
Thalidomide
Defects
Opossums

An in-depth look into PTSD-depression comorbidity: A longitudinal study of chronically-exposed Detroit residents

Horesh, D., Lowe, S. R., Galea, S., Aiello, A. E., Uddin, M. & Koenen, K. C. Jan 15 2017 In : Journal of Affective Disorders. 208, p. 653-661 9 p.

Research output: Research - peer-reviewArticle

Post-Traumatic Stress Disorders
Longitudinal Studies
Comorbidity
Depression
Major Depressive Disorder

An integrative circuit–host modelling framework for predicting synthetic gene network behaviours

Liao, C., Blanchard, A. E. & Lu, T. Sep 25 2017 (Accepted/In press) In : Nature Microbiology. p. 1-9 9 p.

Research output: Research - peer-reviewArticle

Synthetic Genes
Gene Regulatory Networks
Synthetic Biology
Population Dynamics
Ecology

A Nitrogen-Doped Carbon Catalyst for Electrochemical CO2 Conversion to CO with High Selectivity and Current Density

Jhong, H. R. M., Tornow, C. E., Smid, B., Gewirth, A. A., Lyth, S. M. & Kenis, P. J. A. 2017 In : ChemSusChem. 10, 6, p. 1094-1099 6 p.

Research output: Research - peer-reviewArticle

density current
catalyst
nitrogen
carbon
Carbon Monoxide

A novel method for predicting activity of cis-regulatory modules, based on a diverse training set

Yang, W. & Sinha, S. 2017 In : Bioinformatics. 33, 1, p. 1-7 7 p.

Research output: Research - peer-reviewArticle

Module
Training
Chemical analysis
Transcription Factors
Genome

Anti-inflammatory ω-3 endocannabinoid epoxides

McDougle, D. R., Watson, J. E., Abdeen, A. A., Adili, R., Caputo, M. P., Krapf, J. E., Johnson, R. W., Kilian, K. A., Holinstat, M. & Das, A. Jul 25 2017 In : Proceedings of the National Academy of Sciences of the United States of America. 114, 30, p. E6034-E6043

Research output: Research - peer-reviewArticle

Endocannabinoids
Epoxy Compounds
Anti-Inflammatory Agents
Acids
Omega-3 Fatty Acids

AntiSMASH 4.0 - improvements in chemistry prediction and gene cluster boundary identification

Blin, K., Wolf, T., Chevrette, M. G., Lu, X., Schwalen, C. J., Kautsar, S. A., Suarez Duran, H. G., De Los Santos, E. L. C., Kim, H. U., Nave, M., Dickschat, J. S., Mitchell, D. A., Shelest, E., Breitling, R., Takano, E., Lee, S. Y., Weber, T. & Medema, M. H. Jul 3 2017 In : Nucleic Acids Research. 45, W1, p. W36-W41

Research output: Research - peer-reviewArticle

Multigene Family
Genome
Anti-Bacterial Agents
Proteins
Food Preservatives

A plug-and-play pathway refactoring workflow for natural product research in Escherichia coli and Saccharomyces cerevisiae

Ren, H., Hu, P. & Zhao, H. Aug 1 2017 In : Biotechnology and Bioengineering. 114, 8, p. 1847-1854 8 p.

Research output: Research - peer-reviewArticle

Workflow
Biological Products
Saccharomyces cerevisiae
Escherichia coli
Research

A point-of-care microfluidic biochip for quantification of CD64 expression from whole blood for sepsis stratification

Hassan, U., Ghonge, T., Reddy, B., Patel, M., Rappleye, M., Taneja, I., Tanna, A., Healey, R., Manusry, N., Price, Z., Jensen, T., Berger, J., Hasnain, A., Flaugher, E., Liu, S., Davis, B., Kumar, J., White, K. & Bashir, R. Jul 3 2017 In : Nature Communications. 8, 15949

Research output: Research - peer-reviewArticle

Point-of-Care Systems
Microfluidics
Sepsis
leukocytes
stratification

Application of an advanced maximum likelihood estimation restoration method for enhanced-resolution and contrast in second-harmonic generation microscopy

Sivaguru, M., Kabir, M. M., Gartia, M. R., Biggs, D. S. C., Sivaguru, B. S., Sivaguru, V. A., Fried, G. A., Liu, G. L., Sadayappan, S. & Toussaint, K. C. Sep 1 2017 In : Journal of Microscopy. 267, 3, p. 397-408 12 p.

Research output: Research - peer-reviewArticle

Photons
Microscopy
Signal-To-Noise Ratio
Collagen
Fibrillar Collagens

A quantitative framework for the analysis of multimodal optical microscopy images

Bower, A. J., Chidester, B., Li, J., Zhao, Y., Marjanovic, M., Chaney, E. J., Do, M. N. & Boppart, S. A. 2017 In : Quantitative Imaging in Medicine and Surgery. 7, 1, p. 24-37 14 p.

Research output: Research - peer-reviewArticle

Microscopy
Cell Death
Datasets
Support Vector Machine

Aromatic thermosetting copolyester foam core and aluminum foam face three-layer sandwich composite for impact energy absorption

Bakir, M., Bahceci, E., Meyer, J. L., Economy, J. & Jasiuk, I. Jun 1 2017 In : Materials Letters. 196, p. 288-291 4 p.

Research output: Research - peer-reviewArticle

energy absorption
foams
aluminum
composite materials
Energy absorption

Aromatic thermosetting copolyester nanocomposite foams: High thermal and mechanical performance lightweight structural materials

Bakir, M., Meyer, J. L., Economy, J. & Jasiuk, I. Aug 11 2017 In : Polymer (United Kingdom). 123, p. 311-320 10 p.

Research output: Research - peer-reviewArticle

Foams
Nanocomposites
Hot Temperature
Oligomers
Carbon

A Scalable Epitope Tagging Approach for High Throughput ChIP-Seq Analysis

Xiong, X., Zhang, Y., Yan, J., Jain, S., Chee, S., Ren, B. & Zhao, H. Jun 16 2017 In : ACS Synthetic Biology. 6, 6, p. 1034-1042 9 p.

Research output: Research - peer-reviewArticle

Chromatin Immunoprecipitation
Epitopes
Chromatin
Genes
Throughput

Assessing the colonic microbiome, hydrogenogenic and hydrogenotrophic genes, transit and breath methane in constipation

Wolf, P. G., Parthasarathy, G., Chen, J., O'Connor, H. M., Chia, N., Bharucha, A. E. & Gaskins, H. R. Oct 1 2017 In : Neurogastroenterology and Motility. 29, 10, p. 1-9 9 p.

Research output: Research - peer-reviewArticle

Microbiota
Methane
Constipation
Genes
Hydrogensulfite Reductase

A standardized method for quantifying consistent individual differences in schooling behaviour

Pearish, S., Hostert, L. & Bell, A. M. Jan 1 2017 In : Journal of Fish Biology. 90, 1, p. 443-450 8 p.

Research output: Research - peer-reviewArticle

schooling behavior
method
aggregation behavior
methodology
fish