Research Output 1971 2019

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2019

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy
Yeast
yeast
ethanol
Ethanol
maize

Broccoli consumption affects the human gastrointestinal microbiota

Kaczmarek, J. L., Liu, X., Charron, C. S., Novotny, J. A., Jeffery, E. H., Seifried, H. E., Ross, S. A., Miller, M. J., Swanson, K. S. & Holscher, H. D., Jan 1 2019, In : Journal of Nutritional Biochemistry. 63, p. 27-34 8 p.

Research output: Contribution to journalArticle

Brassica
Glucosinolates
Vegetables
Phytochemicals
Nutrition

Cilostamide affects in a concentration and exposure time-dependent manner the viability and the kinetics of in vitro maturation of caprine and bovine oocytes

Correia, H. H. V., Vieira, L. A., Mielgo, C. M., Paes, V. M., Alves, B. G., Silva, J. R. V., Wheeler, M. B., Rodrigues, A. P. R. & Figueiredo, J. R., Feb 1 2019, In : Research in Veterinary Science. 122, p. 22-28 7 p.

Research output: Contribution to journalArticle

Oocytes
exposure duration
oocytes
goats
viability

Individual differences in analogical reasoning revealed by multivariate task-based functional brain imaging

Hammer, R., Paul, E. J., Hillman, C. H., Kramer, A. F., Cohen, N. J. & Barbey, A. K., Jan 1 2019, In : NeuroImage. 184, p. 993-1004 12 p.

Research output: Contribution to journalArticle

Functional Neuroimaging
Individuality
Brain
Occipital Lobe
Aptitude

Influence of algal organic matter on MS2 bacteriophage inactivation by ultraviolet irradiation at 220 nm and 254 nm

Wang, Y., Araud, E., Shisler, J. L., Nguyen, T. H. & Yuan, B., Jan 1 2019, In : Chemosphere. 214, p. 195-202 8 p.

Research output: Contribution to journalArticle

Levivirus
Bacteriophages
bacteriophage
Biological materials
irradiation

Mineralization in micropores of calcium phosphate scaffolds

Rustom, L. E., Poellmann, M. J. & Wagoner Johnson, A. J., Jan 1 2019, In : Acta Biomaterialia. 83, p. 435-455 21 p.

Research output: Contribution to journalArticle

Calcium phosphate
Scaffolds
Bone
Bone and Bones
Bone Development

Modeling of Osteoprobe indentation on bone

Idkaidek, A. & Jasiuk, I. M., Feb 1 2019, In : Journal of the Mechanical Behavior of Biomedical Materials. 90, p. 365-373 9 p.

Research output: Contribution to journalArticle

Indentation
Bone
Yield stress
Elastic moduli
Viscosity
Transcription
Boundary conditions

Nutrient biomarker patterns, cognitive function, and fMRI measures of network efficiency in the aging brain

Zwilling, C. E., Talukdar, T., Zamroziewicz, M. K. & Barbey, A. K., Mar 1 2019, In : NeuroImage. 188, p. 239-251 13 p.

Research output: Contribution to journalArticle

Cognition
Biomarkers
Magnetic Resonance Imaging
Efficiency
Unsaturated Fatty Acids

Origin of serrated flow in bulk metallic glasses

Xie, X., Lo, Y. C., Tong, Y., Qiao, J., Wang, G., Ogata, S., Qi, H., Dahmen, K. A., Gao, Y. & Liaw, P. K., Mar 1 2019, In : Journal of the Mechanics and Physics of Solids. 124, p. 634-642 9 p.

Research output: Contribution to journalArticle

Metallic glass
metallic glasses
Shear bands
shear
mechanical properties

pH selectively regulates citric acid and lipid production in Yarrowia lipolytica W29 during nitrogen-limited growth on glucose

Zhang, S., Jagtap, S. S., Deewan, A. & Rao, C. V., Jan 20 2019, In : Journal of Biotechnology. 290, p. 10-15 6 p.

Research output: Contribution to journalArticle

Yarrowia
Metabolic engineering
Metabolic Engineering
Citric acid
Physiology

Plasmonic enhancement in lateral flow sensors for improved sensing of E. coli O157:H7

Ren, W., Ballou, D. R., FitzGerald, R. & Irudayaraj, J. M. K., Feb 1 2019, In : Biosensors and Bioelectronics. 126, p. 324-331 8 p.

Research output: Contribution to journalArticle

Polyethyleneimine
Escherichia coli O157
Gold
Nanoparticles
Escherichia coli

Point-of-use detection of ascorbic acid using a spectrometric smartphone-based system

Aguirre, M. Á., Long, K. D., Canals, A. & Cunningham, B. T., Jan 30 2019, In : Food Chemistry. 272, p. 141-147 7 p.

Research output: Contribution to journalArticle

Smartphones
Ascorbic Acid
Methylene Blue
ascorbic acid
Liquid Phase Microextraction
Salts
Sodium
Safety
Growth
Swine
2018

13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study

Jeon, S., Li, Q., Rubakhin, S., Sweedler, J. V., Smith, J. W., Neuringer, M., Kuchan, M. & Erdman, J. W., Jan 1 2018, (Accepted/In press) In : Nutrition Research.

Research output: Contribution to journalArticle

Lutein
Macaca mulatta
Oral Administration
Tissue Distribution
Haplorhini

3D Plasmon Coupling Assisted Sers on Nanoparticle-Nanocup Array Hybrids

Seo, S., Chang, T. W. & Liu, G. L., Dec 1 2018, In : Scientific reports. 8, 1, 3002.

Research output: Contribution to journalArticle

nanoparticles
Raman spectra
augmentation
electromagnetic absorption
light emission

Aberrantly high expression of the CUB and zona pellucida-like domain-containing protein 1 (CUZD1) in mammary epithelium leads to breast tumorigenesis

Mapes, J., Anandan, L., Li, Q., Neff, A., Clevenger, C. V., Bagchi, I. C. & Bagchi, M. K., Jan 1 2018, In : Journal of Biological Chemistry. 293, 8, p. 2850-2864 15 p.

Research output: Contribution to journalArticle

Zona Pellucida
Herpes Zoster
Carcinogenesis
Breast
Epithelium

A brief assessment tool for investigating facets of moral judgment from realistic vignettes

Kruepke, M., Molloy, E. K., Bresin, K., Barbey, A. K. & Verona, E., Jun 1 2018, In : Behavior Research Methods. 50, 3, p. 922-936 15 p.

Research output: Contribution to journalArticle

Episodic Memory
Needs Assessment
Research Personnel
Vignettes
Moral Judgment

A caged metabolic precursor for DT-diaphorase-responsive cell labeling

Wang, R., Cai, K., Wang, H., Yin, C. & Cheng, J., Jan 1 2018, In : Chemical Communications. 54, 38, p. 4878-4881 4 p.

Research output: Contribution to journalArticle

NAD(P)H Dehydrogenase (Quinone)
Metabolites
Sugars
Labeling
Cells
8-amino-7-oxononanoate synthase
coenzyme A
biotin
Biotin
Bacillus subtilis
Amyelois transitella
Aspergillus flavus
Lepidoptera
Aspergillus
Pyralidae

Accelerated Thermal Depolymerization of Cyclic Polyphthalaldehyde with a Polymeric Thermoacid Generator

Lopez Hernandez, H., Lee, O. P., Possanza, C., Kaitz, J. A., Park, C. W., Plantz, C. L., Moore, J. S. & White, S. R., Jan 1 2018, (Accepted/In press) In : Macromolecular Rapid Communications.

Research output: Contribution to journalArticle

Sulfones
Depolymerization
Carbonates
o-Phthalaldehyde
Electronics packaging

A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models

Tabe-Bordbar, S., Emad, A., Zhao, S. D. & Sinha, S., Dec 1 2018, In : Scientific Reports. 8, 1, 6620.

Research output: Contribution to journalArticle

Gene expression
Genes
Supervised learning
Simulated annealing
Genomics

A comparison of methods to assess cell mechanical properties

Wu, P. H., Aroush, D. R. B., Asnacios, A., Chen, W. C., Dokukin, M. E., Doss, B. L., Durand-Smet, P., Ekpenyong, A., Guck, J., Guz, N. V., Janmey, P. A., Lee, J. S. H., Moore, N. M., Ott, A., Poh, Y. C., Ros, R., Sander, M., Sokolov, I., Staunton, J. R., Wang, N. & 2 othersWhyte, G. & Wirtz, D., Jun 18 2018, (Accepted/In press) In : Nature Methods. p. 1-8 8 p.

Research output: Contribution to journalArticle

Mechanical properties
Cell adhesion
Rheology
Stretching
Monolayers

A comparison of the effect of molluscum contagiosum virus MC159 and MC160 proteins on vaccinia virus virulence in intranasal and intradermal infection routes

Biswas, S., Smith, G. L., Roy, E. J., Ward, B. & Shisler, J. L., Feb 1 2018, In : Journal of General Virology. 99, 2, p. 246-252 7 p., 001006.

Research output: Contribution to journalArticle

Molluscum contagiosum virus
Vaccinia virus
Virulence
Infection
Virus Replication

A comprehensive genomic history of extinct and living elephants

Palkopoulou, E., Lipson, M., Mallick, S., Nielsen, S., Rohland, N., Baleka, S., Karpinski, E., Ivancevic, A. M., To, T. H., Daniel Kortschak, R., Raison, J. M., Qu, Z., Chin, T. J., Alt, K. W., Claesson, S., Dalén, L., MacPhee, R. D. E., Meller, H., Roca, A. L., Ryder, O. A. & 17 othersHeiman, D., Young, S., Breen, M., Williams, C., Aken, B. L., Ruffier, M., Karlsson, E., Johnson, J., Palma, F. D., Alfoldi, J., Adelson, D. L., Mailund, T., Munch, K., Lindblad-Toh, K., Hofreiter, M., Poinar, H. & Reich, D., Jan 1 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 11, p. E2566-E2574

Research output: Contribution to journalArticle

Mastodons
North America
History
Genome
Forests

A coupled chlorinase-fluorinase system with a high efficiency of trans -halogenation and a shared substrate tolerance

Sun, H., Zhao, H. & Ang, E. L., Jan 1 2018, In : Chemical Communications. 54, 68, p. 9458-9461 4 p.

Research output: Contribution to journalArticle

Halogenation
Substrates
Enzymes
fluorinase

Acoustic band gaps and elastic stiffness of PMMA cellular solids based on triply periodic minimal surfaces

Abueidda, D. W., Jasiuk, I. M. & Sobh, N. A., May 5 2018, In : Materials and Design. 145, p. 20-27 8 p.

Research output: Contribution to journalArticle

Polymethyl Methacrylate
Energy gap
Acoustics
Stiffness
Porosity

Acquisition of the phosphate transporter NptA enhances Staphylococcus aureus pathogenesis by improving phosphate uptake in divergent environments

Kelliher, J. L., Radin, J. N., Grim, K. P., Solórzano, P. K. P., Degnan, P. & Kehl-Fie, T., Jan 1 2018, In : Infection and Immunity. 86, 1, e00631-17.

Research output: Contribution to journalArticle

Phosphate Transport Proteins
Staphylococcus aureus
Phosphates
Infection
Bacteria

Adenovirus Replication Cycle Disruption from Exposure to Polychromatic Ultraviolet Irradiation

Vazquez-Bravo, B., Gonçalves, K., Shisler, J. L. & Marinas, B. J., Mar 20 2018, In : Environmental Science and Technology. 52, 6, p. 3652-3659 8 p.

Research output: Contribution to journalArticle

irradiation
genome
Genes
Irradiation
polymerase chain reaction

A designed heme-[4Fe-4S] metalloenzyme catalyzes sulfite reduction like the native enzyme

Mirts, E. N., Petrik, I. D., Hosseinzadeh, P., Nilges, M. J. & Lu, Y., Sep 14 2018, In : Science. 361, 6407, p. 1098-1101 4 p.

Research output: Contribution to journalArticle

Sulfites
Heme
Enzymes
Protons
Oxidoreductases Acting on Sulfur Group Donors

Advances in engineered human liver platforms for drug metabolism studies

Underhill, G. H. & Khetani, S. R., Nov 1 2018, In : Drug Metabolism and Disposition. 46, 11, p. 1626-1637 12 p.

Research output: Contribution to journalArticle

Liver
Pharmaceutical Preparations
Hepatocytes
Drug Industry
Drug Interactions

Advancing Metabolic Engineering of Saccharomyces cerevisiae Using the CRISPR/Cas System

Lian, J., Hamedirad, M. & Zhao, H., Jan 1 2018, (Accepted/In press) In : Biotechnology Journal.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Metabolic Engineering
Saccharomyces cerevisiae
Gene Knockout Techniques
Biotechnology

Adverse Childhood Experiences and Development in Emerging Adulthood

Davis, J. P., Dumas, T. M. & Roberts, B. W., Aug 1 2018, In : Emerging Adulthood. 6, 4, p. 223-234 12 p.

Research output: Contribution to journalArticle

adulthood
Emotions
childhood
experience
Turk

Aerobic fitness explains individual differences in the functional brain connectome of healthy young adults

Talukdar, T., Nikolaidis, A., Zwilling, C. E., Paul, E. J., Hillman, C. H., Cohen, N. J., Kramer, A. F. & Barbey, A. K., Oct 1 2018, In : Cerebral Cortex. 28, 10, p. 3600-3609 10 p.

Research output: Contribution to journalArticle

Connectome
Individuality
Young Adult
Executive Function
Brain
Ixodes
Ixodes scapularis
chemoreceptors
sense organs
Ticks

Aftershocks in slowly compressed bulk metallic glasses: Experiments and theory

McFaul, L. W., Wright, W. J., Gu, X., Uhl, J. T. & Dahmen, K. A., Jun 28 2018, In : Physical Review E. 97, 6, 063005.

Research output: Contribution to journalArticle

Metallic Glasses
Avalanche
metallic glasses
avalanches
Slip

Age- and sex-dependent effects of methamphetamine on cognitive flexibility and 5-HT2C receptor localization in the orbitofrontal cortex of Sprague-Dawley rats

Hankosky, E. R., Westbrook, S. R., Haake, R. M., Willing, J., Raetzman, L. T., Juraska, J. M. & Gulley, J. M., Sep 3 2018, In : Behavioural Brain Research. 349, p. 16-24 9 p.

Research output: Contribution to journalArticle

Receptor, Serotonin, 5-HT2C
Methamphetamine
Prefrontal Cortex
Parvalbumins
Sprague Dawley Rats

Age and sex differences in behavioral flexibility, sensitivity to reward value, and risky decision-making

Westbrook, S. R., Hankosky, E. R., Dwyer, M. R. & Gulley, J. M., Apr 1 2018, In : Behavioral Neuroscience. 132, 2, p. 75-87 13 p.

Research output: Contribution to journalArticle

Reward
Sex Characteristics
Decision Making
Reversal Learning
Sprague Dawley Rats

Agonistic character displacement of genetically based male colour patterns across darters

Moran, R. L. & Fuller, B. C., Aug 15 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1884, 20181248.

Research output: Contribution to journalArticle

character displacement
Color
color
Sympatry
sympatry

A high-sensitivity potentiometric 65-nm CMOS ISFET sensor for rapid E. coli Screening

Jiang, Y., Liu, X., Dang, T. C., Huang, X., Feng, H., Zhang, Q. & Yu, H., Apr 1 2018, In : IEEE Transactions on Biomedical Circuits and Systems. 12, 2, p. 402-415 14 p.

Research output: Contribution to journalArticle

Ion sensitive field effect transistors
Escherichia coli
Food safety
Screening
Bacteria

A high spatiotemporal study of somatic exocytosis with scanning electrochemical microscopy and nanoITIES electrodes

Welle, T. M., Alanis, K., Colombo, M. L., Sweedler, J. V. & Shen, M., Jan 1 2018, In : Chemical Science. 9, 22, p. 4937-4941 5 p.

Research output: Contribution to journalArticle

Cellular radio systems
Carisoprodol
Acetylcholine
Neurotransmitter Agents
Microscopic examination

A Hypothalamic Switch for REM and Non-REM Sleep

Chen, K. S., Xu, M., Zhang, Z., Chang, W. C., Gaj, T., Schaffer, D. V. & Dan, Y., Mar 7 2018, In : Neuron. 97, 5, p. 1168-1176.e4

Research output: Contribution to journalArticle

REM Sleep
Eye Movements
Sleep
Neurons
Hypothalamus

Airyscan super-resolution microscopy of mitochondrial morphology and dynamics in living tumor cells

Kolossov, V. L., Sivaguru, M., Huff, J., Luby, K., Kanakaraju, K. & Gaskins, H. R., Feb 1 2018, In : Microscopy research and technique. 81, 2, p. 115-128 14 p.

Research output: Contribution to journalArticle

Mitochondrial Dynamics
Tumors
Microscopy
Microscopic examination
tumors

A lanthipeptide library used to identify a protein-protein interaction inhibitor article

Yang, X., Lennard, K. R., He, C., Walker, M. C., Ball, A. T., Doigneaux, C., Tavassoli, A. & van der Donk, W. A., Apr 1 2018, In : Nature chemical biology. 14, 4, p. 375-380 6 p.

Research output: Contribution to journalArticle

Libraries
Proteins
Human Immunodeficiency Virus Proteins
Ligases
Biological Products

Albumin as a "trojan Horse" for polymeric nanoconjugate transendothelial transport across tumor vasculatures for improved cancer targeting

Yin, Q., Tang, L., Cai, K., Yang, X., Yin, L., Zhang, Y., Dobrucki, W., Helferich, W. G., Fan, T. M. & Cheng, J., May 1 2018, In : Biomaterials Science. 6, 5, p. 1189-1200 12 p.

Research output: Contribution to journalArticle

Nanoconjugates
Tumors
Albumins
Bearings (structural)
Medical nanotechnology

Aligning Synthetic Hippocampal Neural Circuits via Self-Rolled-Up Silicon Nitride Microtube Arrays

Cangellaris, O. V., Corbin, E. A., Froeter, P., Michaels, J. A., Li, X. & Gillette, M. L., Oct 24 2018, In : ACS Applied Materials and Interfaces. 10, 42, p. 35705-35714 10 p.

Research output: Contribution to journalArticle

Silicon nitride
Neurons
Networks (circuits)
Neurodegenerative diseases
Substrates

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 othersZhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M. A., Chen, L., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R. R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Saccharum
Alleles
Genome
Chromosomes, Human, Pair 4
Disease Resistance

Almond consumption and processing affects the composition of the gastrointestinal microbiota of healthy adult men and women: A randomized controlled trial

Holscher, H. D., Taylor, A. M., Swanson, K. S., Novotny, J. A. & Baer, D. J., Feb 1 2018, In : Nutrients. 10, 2, 126.

Research output: Contribution to journalArticle

almonds
Randomized Controlled Trials
microorganisms
Lachnospira
almond butter