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2020

Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy

Misra, C., Bangru, S., Lin, F., Lam, K., Koenig, S. N., Lubbers, E. R., Hedhli, J., Murphy, N. P., Parker, D. J., Dobrucki, L. W., Cooper, T. A., Tajkhorshid, E., Mohler, P. J. & Kalsotra, A., Feb 1 2020, (Accepted/In press) In : Developmental cell.

Research output: Contribution to journalArticle

A bifunctional salvage pathway for two distinct S-adenosylmethionine by-products that is widespread in bacteria, including pathogenic Escherichia coli

North, J. A., Wildenthal, J. A., Erb, T. J., Evans, B. S., Byerly, K. M., Gerlt, J. A. & Tabita, F. R., Jan 1 2020, (Accepted/In press) In : Molecular Microbiology.

Research output: Contribution to journalArticle

A computational framework to explore large-scale biosynthetic diversity

Navarro-Muñoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez-Guerra, A., Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., Jan 1 2020, In : Nature chemical biology. 16, 1, p. 60-68 9 p.

Research output: Contribution to journalArticle

A Computer Conquers Tactical Combinations

Blair, D. J. & Burke, M. D., Jan 9 2020, In : Chem. 6, 1, p. 12-13 2 p.

Research output: Contribution to journalArticle

Actin protrusions push at apical junctions to maintain E-cadherin adhesion

He Li, J. X., Tang, V. W. & Brieher, W. M., Jan 7 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 1, p. 432-438 7 p.

Research output: Contribution to journalArticle

Acute exposure to physiological doses of triiodothyronine does not induce gonadal caspase 3 activity in goldfish in vitro

Allan, E. R. O., Dores, C. B., Nelson, E. R. & Habibi, H. R., Apr 1 2020, In : General and Comparative Endocrinology. 289, 113382.

Research output: Contribution to journalArticle

Acute PFOA exposure promotes epigenomic alterations in mouse kidney tissues

Rashid, F., Ramakrishnan, A., Fields, C. & Irudayaraj, J., 2020, In : Toxicology Reports. 7, p. 125-132 8 p.

Research output: Contribution to journalArticle

Open Access

A generic arboviral model framework for exploring trade-offs between vector control and environmental concerns

Suarez, G. P., Udiani, O., Allan, B. F., Price, C., Ryan, S. J., Lofgren, E., Coman, A., Stone, C. M., Gallos, L. K. & Fefferman, N. H., Apr 7 2020, In : Journal of Theoretical Biology. 490, 110161.

Research output: Contribution to journalArticle

A genetic toolbox for metabolic engineering of Issatchenkia orientalis

Cao, M., Fatma, Z., Song, X., Hsieh, P. H., Tran, V. G., Lyon, W. L., Sayadi, M., Shao, Z., Yoshikuni, Y. & Zhao, H., May 2020, In : Metabolic Engineering. 59, p. 87-97 11 p.

Research output: Contribution to journalArticle

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access

Altered Hippocampal Epigenetic Regulation Underlying Reduced Cognitive Development in Response to Early Life Environmental Insults

Schachtschneider, K. M., Welge, M. E., Auvil, L., Chaki, S., Rund, L. A., Madsen, O., Elmore, M. R. P., Johnson, R. W., Groenen, M. A. M. & Schook, L. B., Feb 4 2020, In : Genes. 11, 2, 162.

Research output: Contribution to journalArticle

Open Access

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access

An in-silico human cell model reveals the influence of spatial organization on RNA splicing

Ghaemi, Z., Peterson, J. R., Gruebele, M. & Luthey-schulten, Z., Mar 25 2020, In : PLoS computational biology. 16, 3, p. e1007717

Research output: Contribution to journalArticle

Open Access

A photo-regulated aptamer sensor for spatiotemporally controlled monitoring of ATP in the mitochondria of living cells

Hong, S., Zhang, X., Lake, R. J., Pawel, G. T., Guo, Z., Pei, R. & Lu, Y., Jan 1 2020, In : Chemical Science. 11, 3, p. 713-720 8 p.

Research output: Contribution to journalArticle

Open Access

Assessing the transition effects in a drinking water distribution system caused by changing supply water quality: an indirect approach by characterizing suspended solids

Chen, L., Ling, F., Bakker, G., Liu, W. T., Medema, G., van der Meer, W. & Liu, G., Jan 1 2020, In : Water Research. 168, 115159.

Research output: Contribution to journalArticle

Open Access

Assessment of microbial risks by characterization of Escherichia coli presence to analyze the public health risks from poor water quality in Nepal

Uprety, S., Dangol, B., Nakarmi, P., Dhakal, I., Sherchan, S. P., Shisler, J. L., Jutla, A., Amarasiri, M., Sano, D. & Nguyen, T. H., May 2020, In : International Journal of Hygiene and Environmental Health. 226, 113484.

Research output: Contribution to journalArticle

A Staphylococcus pro-apoptotic peptide induces acute exacerbation of pulmonary fibrosis

D’alessandro-gabazza, C. N., Kobayashi, T., Yasuma, T., Toda, M., Kim, H., Fujimoto, H., Hataji, O., Takeshita, A., Nishihama, K., Okano, T., Okano, Y., Nishii, Y., Tomaru, A., Fujiwara, K., D’alessandro, V. F., Abdel-hamid, A. M., Ren, Y., Pereira, G. V., Wright, C. L., Hernandez, A. & 15 others, Fields, C. J., Yau, P. M., Wang, S., Mizoguchi, A., Fukumura, M., Ohtsuka, J., Nosaka, T., Kataoka, K., Kondoh, Y., Wu, J., Kawagishi, H., Yano, Y., Mackie, R. I., Cann, I. & Gabazza, E. C., Mar 24 2020, In : Nature Communications. 11, 1, 1539.

Research output: Contribution to journalArticle

Open Access

A study on practical objectives and constraints for heat conduction topology optimization

Lohan, D. J., Dede, E. M. & Allison, J. T., Feb 1 2020, In : Structural and Multidisciplinary Optimization. 61, 2, p. 475-489 15 p.

Research output: Contribution to journalArticle

Bacterial enrichment in highly-selective acetate-fed bioreactors and its application in rapid biofilm formation

Sun, H., Mei, R., Zhang, X. X., Ren, H., Liu, W. T. & Ye, L., Mar 1 2020, In : Water Research. 170, 115359.

Research output: Contribution to journalArticle

Bacteroidetes can be a rich source of novel lanthipeptides: The case study of Pedobacter lusitanus

Caetano, T., van der Donk, W. & Mendo, S., May 2020, In : Microbiological Research. 235, 126441.

Research output: Contribution to journalArticle

Biosynthetic engineering of the antifungal, anti-MRSA auroramycin

Yeo, W. L., Heng, E., Tan, L. L., Lim, Y. W., Ching, K. C., Tsai, D. J., Jhang, Y. W., Lauderdale, T. L., Shia, K. S., Zhao, H., Ang, E. L., Zhang, M. M., Lim, Y. H. & Wong, F. T., Jan 6 2020, In : Microbial cell factories. 19, 1, 3.

Research output: Contribution to journalArticle

Open Access

Can Simulated Nature Support Mental Health? Comparing Short, Single-Doses of 360-Degree Nature Videos in Virtual Reality With the Outdoors

Browning, M. H. E. M., Mimnaugh, K. J., van Riper, C. J., Laurent, H. K. & LaValle, S. M., Jan 15 2020, In : Frontiers in Psychology. 10, 2667.

Research output: Contribution to journalArticle

Open Access

Catalytic Microgelators for Decoupled Control of Gelation Rate and Rigidity of the Biological Gels

Hong, Y. T., Bregante, D. T., Lee, J. C. W., Seo, Y., Kim, D. H., Lee, Y. J., Schook, L. B., Jeon, H., Sung, H. J., Flaherty, D. W., Rogers, S. A. & Kong, H., Jan 10 2020, In : Journal of Controlled Release. 317, p. 166-180 15 p.

Research output: Contribution to journalArticle

Open Access

Central sensory-motor crosstalk in the neural gut-brain axis

Parker, C. G., Dailey, M. J., Phillips, H. & Davis, E. A., May 2020, In : Autonomic Neuroscience: Basic and Clinical. 225, 102656.

Research output: Contribution to journalArticle

Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae

Huo, L., Zhao, X., Acedo, J. Z., Estrada, P., Nair, S. K. & van der Donk, W. A., Jan 15 2020, In : ChemBioChem. 21, 1-2, p. 190-199 10 p.

Research output: Contribution to journalArticle

Characterization of an l -Ascorbate Catabolic Pathway with Unprecedented Enzymatic Transformations

Stack, T. M. M., Morrison, K. N., Dettmer, T. M., Wille, B., Kim, C., Joyce, R., Jermain, M., Naing, Y. T., Bhatti, K., Francisco, B. S., Carter, M. S. & Gerlt, J. A., Jan 29 2020, In : Journal of the American Chemical Society. 142, 4, p. 1657-1661 5 p.

Research output: Contribution to journalArticle

Characterization of the GH16 and GH17 laminarinases from Vibrio breoganii 1C10

Badur, A. H., Ammar, E. M., Yalamanchili, G., Hehemann, J. H. & Rao, C. V., Jan 1 2020, In : Applied Microbiology and Biotechnology. 104, 1, p. 161-171 11 p.

Research output: Contribution to journalArticle

Comparative effects of N-cadherin protein and peptide fragments on mesenchymal stem cell mechanotransduction and paracrine function

Qin, E. C., Ahmed, S. T., Sehgal, P., Vu, V. H., Kong, H. & Leckband, D. E., May 2020, In : Biomaterials. 239, 119846.

Research output: Contribution to journalArticle

Constructing dynamic treatment regimes with shared parameters for censored data

Zhao Ruoqing, Y. Q., Zhu, R., Chen, G. & Zheng, Y., Jan 1 2020, (Accepted/In press) In : Statistics in Medicine.

Research output: Contribution to journalArticle

Cooperation and stability for complex systems in resource-limited environments

Butler, S. & O’Dwyer, J. P., Jan 1 2020, (Accepted/In press) In : Theoretical Ecology.

Research output: Contribution to journalArticle

Depixelation and enhancement of fiber bundle images by bundle rotation

Renteria, C., Suárez, J., Licudine, A. & Boppart, S. A., Jan 10 2020, In : Applied Optics. 59, 2, p. 536-544 9 p.

Research output: Contribution to journalArticle

Open Access

Differential effects of rapamycin and metformin in combination with rapamycin on mechanisms of proteostasis in cultured skeletal myotubes

Wolff, C. A., Reid, J. J., Musci, R. V., Linden, M. A., Konopka, A. R., Peelor, F. F., Miller, B. F. & Hamilton, K. L., Jan 1 2020, In : Journals of Gerontology - Series A Biological Sciences and Medical Sciences. 75, 1, p. 32-39 8 p.

Research output: Contribution to journalArticle

Open Access

Differential post-translational amino acid isomerization found among neuropeptides in aplysia californica

Mast, D. H., Checco, J. W. & Sweedler, J. V., Jan 17 2020, In : ACS chemical biology. 15, 1, p. 272-281 10 p.

Research output: Contribution to journalArticle

Diversity of metabolite accumulation patterns in inner and outer seed coats of pomegranate: exploring their relationship with genetic mechanisms of seed coat development

Qin, G., Liu, C., Li, J., Qi, Y., Gao, Z., Zhang, X., Yi, X., Pan, H., Ming, R. & Xu, Y., Dec 1 2020, In : Horticulture Research. 7, 1, 10.

Research output: Contribution to journalArticle

Duplication of leucyl-tRNA synthetase in an archaeal extremophile may play a role in adaptation to variable environmental conditions

Weitzel, C. S., Li, L., Zhang, C., Eilts, K. K., Bretz, N. M., Gatten, A. L., Whitaker, R. J. & Martinis, S. A., Feb 26 2020, (Accepted/In press) In : Journal of Biological Chemistry. jbc.RA118.006481.

Research output: Contribution to journalArticle

Dynamic Tracking Algorithm for Time-Varying Neuronal Network Connectivity using Wide-Field Optical Image Video Sequences

Renteria, C., Liu, Y. Z., Chaney, E. J., Barkalifa, R., Sengupta, P. & Boppart, S. A., Dec 1 2020, In : Scientific reports. 10, 1, 2540.

Research output: Contribution to journalArticle

Open Access
Open Access

Effects of 12-week avocado consumption on cognitive function among adults with overweight and obesity

Edwards, C. G., Walk, A. M., Thompson, S. V., Reeser, G. E., Erdman, J. W., Burd, N. A., Holscher, H. D. & Khan, N. A., Feb 2020, In : International Journal of Psychophysiology. 148, p. 13-24 12 p.

Research output: Contribution to journalArticle

Effects of nitrogenous substances on heat transfer fouling using model thin stillage fluids

You, J., Johnston, D. B., Dien, B. S., Singh, V., Engeseth, N. J., Tumbleson, M. E. & Rausch, K. D., Jan 2020, In : Food and Bioproducts Processing. 119, p. 125-132 8 p.

Research output: Contribution to journalArticle

Encapsulation of probiotics in whey protein isolate and modified huauzontle's starch: An approach to avoid fermentation and stabilize polyphenol compounds in a ready-to-drink probiotic green tea

Hernández-Barrueta, T., Martínez-Bustos, F., Castaño-Tostado, E., Lee, Y., Miller, M. J. & Amaya-Llano, S. L., Apr 2020, In : LWT. 124, 109131.

Research output: Contribution to journalArticle

Engineering of Saccharomyces cerevisiae for efficient fermentation of cellulose

Oh, E. J. & Jin, Y. S., Feb 1 2020, In : FEMS yeast research. 20, 1

Research output: Contribution to journalArticle

Open Access

Epigenetic toxicity of PFOA and GenX in HepG2 cells and their role in lipid metabolism

Wen, Y., Mirji, N. & Irudayaraj, J., Jun 2020, In : Toxicology in Vitro. 65, 104797.

Research output: Contribution to journalArticle

Open Access

Estimating photosynthetic traits from reflectance spectra: A synthesis of spectral indices, numerical inversion, and partial least square regression

Fu, P., Meacham-Hensold, K., Guan, K., Wu, J. & Bernacchi, C., Jan 1 2020, (Accepted/In press) In : Plant Cell and Environment.

Research output: Contribution to journalArticle

Open Access

Fitting different visual models to behavioral patterns of parasitic egg rejection along a natural egg color gradient in a cavity-nesting host species

Manna, T. J., Hanley, D., Honza, M., Capek, M., Rutila, J., Samaš, P., Abolins-Abols, M. & Hauber, M. E., Feb 2020, In : Vision Research. 167, p. 54-59 6 p.

Research output: Contribution to journalArticle

Frontal polymerization of unidirectional carbon-fiber-reinforced composites

Goli, E., Parikh, N. A., Yourdkhani, M., Hibbard, N. G., Moore, J. S., Sottos, N. R. & Geubelle, P. H., Mar 2020, In : Composites Part A: Applied Science and Manufacturing. 130, 105689.

Research output: Contribution to journalArticle

Functional DNA Regulated CRISPR-Cas12a Sensors for Point-of-Care Diagnostics of Non-Nucleic-Acid Targets

Xiong, Y., Zhang, J., Yang, Z., Mou, Q., Ma, Y., Xiong, Y. & Lu, Y., Jan 1 2020, (Accepted/In press) In : Journal of the American Chemical Society.

Research output: Contribution to journalArticle

Functional interactions between posttranslationally modified amino acids of methyl-coenzyme M reductase in Methanosarcina acetivorans

Nayak, D. D., Liu, A., Agrawal, N., Rodriguez-Carerro, R., Dong, S. H., Mitchell, D. A., Nair, S. K. & Metcalf, W. W., Jan 1 2020, In : PLoS biology. 18, 2, e3000507.

Research output: Contribution to journalArticle

Open Access