Research Output 1968 2020

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2012

Optimization of the molecular dynamics method for simulations of DNA and Ion transport through biological nanopores

Wells, D. B., Bhattacharya, S., Carr, R., Maffeo, C., Ho, A., Comer, J. & Aksimentiev, A., May 8 2012, Nanopore-Based Technology. Gracheva, M. E. (ed.). p. 165-186 22 p. (Methods in Molecular Biology; vol. 870).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanopores
Ion Transport
Molecular Dynamics Simulation
Ions
DNA

Papaya genome and genomics

Ming, R. R., Yu, Q. & Moore, P. H., Nov 1 2012, Genomics of Tree Crops. Springer New York, Vol. 9781461409205. p. 241-259 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carica
papayas
Genomics
Genome
genomics

Papaya sex chromosomes

Gschwend, A. R. & Ming, R. R., Feb 2012, New Insights on Plant Sex Chromosomes. Nova Science Publishers, Inc., p. 51-66 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carica
Sex Chromosomes
sex chromosomes
papayas
X Chromosome

Pasteurella multocida toxin interaction with host cells: Entry and cellular effects

Wilson, B. A. & Ho, M., 2012, Pasteurella multocida: Molecular Biology, Toxins and Infection. Vol. 361. p. 93-111 19 p. (Current Topics in Microbiology and Immunology; vol. 361).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pasteurella multocida
G12-G13 GTP-Binding Protein alpha Subunits
Bacterial Toxins
Calcium Signaling
Bacterial Proteins

Probabilistic models for text mining

Sun, Y., Deng, H. & Han, J., Aug 1 2012, Mining Text Data. Springer US, Vol. 9781461432234. p. 259-295 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hidden Markov models
Statistical Models
Modeling languages

Single-molecule studies of viral DNA packaging

Chemla, Y. R. & Smith, D. E., Mar 19 2012, Viral Molecular Machines. Rossmann, M. & Rao, V. (eds.). p. 549-584 36 p. (Advances in Experimental Medicine and Biology; vol. 726).

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical Tweezers
DNA Packaging
Virus Assembly
Bacteriophage T4
Bacteriophages

Strain Improvement via Evolutionary Engineering

Kim, B., Du, J. & Zhao, H., Oct 24 2012, Engineering Complex Phenotypes in Industrial Strains. John Wiley and Sons, p. 111-131 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Surface Characteristics of Fresh Produce and their Impact on Attachment and Removal of Human Pathogens on Produce Surfaces

Wang, H., Zhou, B. & Feng, H., Feb 20 2012, Decontamination of Fresh and Minimally Processed Produce. Wiley Blackwell, p. 43-57 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sanitation
fresh produce
Pathogens
Vegetables
Fruit

Synthesis of polypeptides by ring-opening polymerization of α-Amino acid N-carboxyanhydrides

Cheng, J. & Deming, T. J., Jan 30 2012, Peptide-Based Materials. Deming, T. (ed.). p. 1-26 26 p. (Topics in Current Chemistry; vol. 310).

Research output: Chapter in Book/Report/Conference proceedingChapter

Ring opening polymerization
Amino Acids
Peptides

T cell receptor engineering

Stone, J. D., Chervin, A. S., Aggen, D. H. & Kranz, D. M., 2012, Methods in Enzymology. Academic Press Inc., p. 189-222 34 p. (Methods in Enzymology; vol. 503).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cell Engineering
T-cells
T-Cell Antigen Receptor
T-Lymphocytes
Major Histocompatibility Complex

The notable and the null: Using mixed methods to understand the diverse impacts of residential mobility programs

DeLuca, S., Duncan, G. J., Keels, M. & Mendenhall, R., Dec 1 2012, Neighbourhood effects research: New perspectives. Springer Netherlands, Vol. 9789400723092. p. 195-223 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

effect on employment
policy approach
mental health
poverty
interview

Tumors of the Skeletal System

Ehrhart, N. P., Ryan, S. D. & Fan, T. M., Nov 1 2012, Withrow and MacEwen's Small Animal Clinical Oncology: Fifth Edition. Elsevier Inc., p. 463-503 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

musculoskeletal system
neoplasms
Neoplasms
2011

Altering Enzyme Substrate and Cofactor Specificity via Protein Engineering

Desieno, M., Du, J. & Zhao, H., Mar 9 2011, Protein Engineering Handbook, Volume 1 & Volume 2. Wiley-VCH, Vol. 2. p. 777-796 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein Engineering
Gene therapy
Biosynthesis
Coenzymes
Substrate Specificity

Applications of pattern discovery using sequential data mining

Gupta, M. & Han, J., Dec 1 2011, Pattern Discovery Using Sequence Data Mining: Applications and Studies. IGI Global, p. 1-23 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

telecommunication
event
education

Approaches for pattern discovery using sequential data mining

Gupta, M. & Han, J., Dec 1 2011, Pattern Discovery Using Sequence Data Mining: Applications and Studies. IGI Global, p. 137-154 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

literature

Architecture of Counterfactual Thought in the Prefrontal Cortex

Barbey, A. K., Krueger, F. & Grafman, J., Sep 22 2011, Predictions in the Brain: Using Our Past to Generate a Future. Oxford University Press

Research output: Chapter in Book/Report/Conference proceedingChapter

Prefrontal Cortex
Aptitude

Bio energy efficiency and a flex-mill simulation in Mato Grosso

Goldsmith, P. D., Rasmussen, R. & Guimaraes, C., Jan 1 2011, Energy, Bio Fuels and Development: Comparing Brazil and The United States. Taylor and Francis, p. 221-235 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Energy efficiency
Bioenergy
Simulation

Biomaterials for studies in cellular mechanotransduction

De Volder, R. & Kong, H., Dec 1 2011, Mechanobiology of Cell-Cell and Cell-Matrix Interactions. Springer US, p. 267-277 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomaterials
Physiology
Cell death
Cell culture
Hydrogels

Collagen-GAG materials

Caliari, S. R. & Harley, B. A., Oct 1 2011, Comprehensive Biomaterials. Elsevier, Vol. 2. p. 279-302 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Collagen

Design and Implementation of Vertically Emitting Distributed Feedback Lasers for Biological Sensing

Lu, M., Choi, S. S., Ge, C., Wagner, C. J., Eden, J. G. & Cunningham, B. T., Feb 24 2011, Label-Free Technologies for Drug Discovery. John Wiley and Sons, p. 27-40 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Distributed feedback lasers

Drug Discovery and Development by Combinatorial Biosynthesis

Desieno, M. A., Denard, C. A. & Zhao, H., May 25 2011, Enzyme Technologies: Metagenomics, Evolution, Biocatalysis, and Biosynthesis. John Wiley and Sons, p. 251-283 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biosynthesis
Drug Discovery

Effect of power ultrasound on food quality

Lee, H. & Feng, H., Jan 1 2011, Food Engineering Series. Springer, p. 559-582 24 p. (Food Engineering Series).

Research output: Chapter in Book/Report/Conference proceedingChapter

Food Quality
food quality
Ultrasonics
Food
processing technology

Elucidation of General and Condition-Dependent Gene Pathways Using Mixture Models and Bayesian Networks

Rodriguez-Zas, S. L. & Ko, Y., Apr 21 2011, Applied Statistics for Network Biology: Methods in Systems Biology. Wiley-VCH, Vol. 1. p. 91-103 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bayesian networks
Genes

Genetic methods for Methanosarcina species

Buan, N., Kulkarni, G. & Metcalf, W. W., 2011, Methods in Enzymology. Academic Press Inc., p. 23-42 20 p. (Methods in Enzymology; vol. 494).

Research output: Chapter in Book/Report/Conference proceedingChapter

Methanosarcina
Methanogens
Genes
Methanosarcina barkeri
Experiments

Global change and photosynthesis

Bernacchi, C., Calfapietra, C., Centritto, M. & Valladares, F., Jan 1 2011, Terrestrial Photosynthesis in a Changing Environment a Molecular, Physiological and Ecological Approach. Cambridge University Press, p. 537-545 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Photosynthesis
global change
photosynthesis
Planets
Biota

Guiding stem cell fate through microfabricated environments

Trump, L. R., Timp, G. & Schook, L. B., Dec 13 2011, Stem Cells and Revascularization Therapies. CRC Press, p. 107-130 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Stem cells
Stem Cells

Measurement of chloroplast ATP synthesis activity in Arabidopsis

Grennan, A. K. & Ort, D. R., Oct 24 2011, Chloroplast Research in Arabidopsis: Methods and Protocols, Volume II. Vol. 775. p. 343-355 13 p. (Methods in Molecular Biology; vol. 775).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chloroplasts
Arabidopsis
Adenosine Triphosphate
Thylakoids
Luciferases

Molecular and structural perspectives on cytochrome P450s in plants

Schuler, M. A. & Rupasinghe, S. G., 2011, Advances in Botanical Research. Academic Press Inc., p. 263-307 45 p. (Advances in Botanical Research; vol. 60).

Research output: Chapter in Book/Report/Conference proceedingChapter

cytochromes
biopharmaceuticals
genome
decarboxylation
carbon

Neuropeptidomics: Mass spectrometry-based qualitative and quantitative analysis

Yin, P., Hou, X., Romanova, E. V. & Sweedler, J. V., Oct 24 2011, Neuropeptides: Methods and Protocols. Merighi, A. (ed.). p. 223-236 14 p. (Methods in Molecular Biology; vol. 789).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuropeptides
Mass Spectrometry
Liquid Chromatography
Peptides
Protein Precursors

Neuropeptidomics

Sweedler, J. V., Xie, F. & Bora, A., Sep 23 2011, Protein and Peptide Mass Spectrometry in Drug Discovery. John Wiley and Sons, p. 393-433 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuropeptidomics of the mammalian brain

Xie, F., Romanova, E. V. & Sweedler, J. V., Jun 3 2011, Neuroproteomics. Li, K. W. (ed.). p. 229-242 14 p. (Neuromethods; vol. 57).

Research output: Chapter in Book/Report/Conference proceedingChapter

Brain
Peptides
Mass spectrometry
Mass Spectrometry
Liquid chromatography

Optical methods for investigation of leaf photosynthesis

Ducruet, J. M., Baron, M., Delucia, E. H., Morales, F. & Sharkey, T. D., Jan 1 2011, Terrestrial Photosynthesis in a Changing Environment a Molecular, Physiological and Ecological Approach. Cambridge University Press, p. 131-151 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Photosynthesis
photosynthesis
Light
Fluorescence
Energy Metabolism

Personality Development across the Life Span

Denissen, J. J. A., Van Aken, M. A. G. & Roberts, B. W., Jan 1 2011, The Wiley-Blackwell Handbook of Individual Differences. Wiley, p. 75-100 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Photonic crystals for biosensing

Cunningham, B. T., Block, I. D., Chan, L., Ganesh, N., Lu, M. & Mathias, P. C., Jan 1 2011, Selected Topics in Photonic Crystals and Metamaterials. World Scientific Publishing Co., p. 329-358 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optics and Photonics
Refractometry
Optical Imaging
Biocompatible Materials
Genomics

Photosynthetic responses to biotic stress

Barón, M., Flexas, J. & Delucia, E. H., Jan 1 2011, Terrestrial Photosynthesis in a Changing Environment a Molecular, Physiological and Ecological Approach. Cambridge University Press, p. 331-350 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Photosynthesis
biotic stress
photosynthesis
Daktulosphaira vitifoliae
leaf area

Photosynthetic responses to high temperature

Sharkey, T. D. & Bernacchi, C., Jan 1 2011, Terrestrial Photosynthesis in a Changing Environment a Molecular, Physiological and Ecological Approach. Cambridge University Press, p. 290-298 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Temperature
Photosynthesis
temperature
photosynthesis
Droughts

Pig genomics

Groenen, M. A. M., Schook, L. B. & Archibald, A. L., Jan 21 2011, The Genetics of the Pig: Second Edition. CABI Publishing, p. 179-199 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genomics
Swine
genomics
swine

Pigs as a model for biomedical sciences

Kuzmuk, K. N. & Schook, L. B., Jan 21 2011, The Genetics of the Pig: Second Edition. CABI Publishing, p. 426-444 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Swine
swine

Probing protein dynamics in vivo using backbone cyclization: Bacterial acyl carrier protein as a case study

Volkmann, G., Murphy, P. W., Rowland, E. E., Cronan, J. E. & Byers, D. M., Dec 23 2011, Methods in Protein Biochemistry. Walter de Gruyter GmbH and Co. KG, p. 271-293 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Acyl Carrier Protein
acyl carrier protein
Cyclization
case studies
Proteins

Quantifying integrin-ligand engagement and cell phenotype in 3D scaffolds

DeVolder, R. J. & Kong, H., Oct 1 2011, Comprehensive Biomaterials. Elsevier, Vol. 5. p. 65-71 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Integrins
Ligands
Phenotype

Specification mining: A concise introduction

Lo, D., Khoo, S. C., Liu, C. & Han, J., Jan 1 2011, Mining Software Specifications: Methodologies and Applications. CRC Press, p. 1-27 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Computer software maintenance
Specifications
Costs
Legacy systems
Computer science

The human vaginal microbiome

Wilson, B. A., Thomas, S. M. & Ho, M., Jan 1 2011, Metagenomics of the Human Body. Springer New York, p. 91-115 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

sexually transmitted disease
womens health
bacterial disease
Microbiota
human immunodeficiency virus

The Roles of Carbohydrate Binding in Fertilization

Miller, D. J., Jul 7 2011, Carbohydrate Recognition: Biological Problems, Methods, and Applications. John Wiley and Sons, p. 107-132 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fertilization
Carbohydrates

The thermodynamic and kinetic aspects of power ultrasound processes

Feng, H., Jan 1 2011, Food Engineering Series. Springer, p. 107-123 17 p. (Food Engineering Series).

Research output: Chapter in Book/Report/Conference proceedingChapter

Sonication
Transducers
Thermodynamics
Cavitation
Acoustics

Treating cardiovascular diseases by enhancing endogenous stem cell mobilization

Youyun, L., DeVolder, R. J. & Kong, H. J., Dec 13 2011, Stem Cells and Revascularization Therapies. CRC Press, p. 193-214 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hematopoietic Stem Cell Mobilization
Stem cells
Cardiovascular Diseases

Tropical maize: Exploiting maize genetic diversity to develop a novel annual crop for lignocellulosic biomass and sugar production

White, W. G., Moose, S. P., Weil, C. F., McCann, M. C., Carpita, N. C. & Below, F. E., Dec 1 2011, Routes to Cellulosic Ethanol. Springer New York, p. 167-179 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fructose
Biomass
Zea mays
Crops
Sucrose

Ultrasonic Processing

Feng, H. & Yang, W., Apr 20 2011, Nonthermal Processing Technologies for Food. Wiley Blackwell, p. 135-154 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ultrasonics
Processing
2010

Advances in Coffea Genomics

Kochko, A. D., Campa, C., Guyot, R., Hamon, P., Poncet, V., Tranchant-Dubreuil, C., Hamon, S., Akaffou, S., Andrade, A. C., Crouzillat, D., Ming, R. R. & Mueller, L. A., Jan 1 2010, Advances in Botanical Research. C ed. p. 23-63 41 p. (Advances in Botanical Research; vol. 53, no. C).

Research output: Chapter in Book/Report/Conference proceedingChapter

Coffea
genomics
Coffea canephora
genome
microsatellite repeats

A mass spectrometry primer for mass spectrometry imaging

Rubakhin, S. & Sweedler, J. V., Dec 1 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 21-49 29 p. (Methods in Molecular Biology; vol. 656).

Research output: Chapter in Book/Report/Conference proceedingChapter

Tandem Mass Spectrometry
Mass Spectrometry
Molecular Biology
Research Personnel
Guidelines

A Micro-Level Approach to Understanding BoP Markets

Viswanathan, M., 2010, Next Generation Business Strategies for the Base of the Pyramid: New Approaches for Building Mutual Value. London, T. & Hart, S. (eds.). FT Press

Research output: Chapter in Book/Report/Conference proceedingChapter