Research Output 1968 2020

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2013

A survey of datamining methods for sensor network bug diagnosis

Abdelzaher, T. & Han, J., Jul 1 2013, Managing and Mining Sensor Data. Springer US, Vol. 9781461463092. p. 429-458 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sensor networks
Data mining
Computer debugging

A survey of RFID data processing

Aggarwal, C. C. & Han, J., Jul 1 2013, Managing and Mining Sensor Data. Springer US, Vol. 9781461463092. p. 349-382 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Radio frequency identification (RFID)
Information management
Processing
Logistics
Sensors

BAC manipulations for making BAC transgene arrays

Khanna, N., Bian, Q., Plutz, M. & Belmont, A. S., Jan 1 2013, Imaging Gene Expression: Methods and Protocols. Humana Press Inc., p. 197-210 14 p. (Methods in Molecular Biology; vol. 1042).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bacterial Artificial Chromosomes
Transgenes
Gene Amplification
Plasmids
Artificial Chromosomes

Cell signaling pathways in vertebrate lens regeneration

Henry, J. J., Thomas, A. G., Hamilton, P. W., Moore, L. & Perry, K. J., Apr 29 2013, New Perspectives in Regeneration. p. 75-98 24 p. (Current Topics in Microbiology and Immunology; vol. 367).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lenses
Vertebrates
Regeneration
Epithelium
Crystalline Lens

Construction and engineering of large biochemical pathways via DNA assembler

Shao, Z. & Zhao, H., Sep 20 2013, Synthetic Biology. Polizzi, K. & Kontoravdi, C. (eds.). p. 85-106 22 p. (Methods in Molecular Biology; vol. 1073).

Research output: Chapter in Book/Report/Conference proceedingChapter

Multigene Family
DNA
Synthetic Biology
Metabolic Engineering
Homologous Recombination

Construction and screening of an antigen-derived peptide library displayed on yeast cell surface for CD4+ T cell epitope identification

Wen, F. & Zhao, H., Sep 20 2013, Immunoproteomics: Methods and Protocols. Fulton, K. & Twine, S. (eds.). p. 245-264 20 p. (Methods in Molecular Biology; vol. 1061).

Research output: Chapter in Book/Report/Conference proceedingChapter

Peptide Library
T-Lymphocyte Epitopes
Yeasts
Major Histocompatibility Complex
Antigens

CRISPR-Cas systems to probe ecological diversity and host-viral interactions

Held, N. L., Childs, L. M., Davison, M., Weitz, J. S., Whitaker, R. & Bhaya, D., Jan 1 2013, CRISPR-Cas Systems: RNA-Mediated Adaptive Immunity in Bacteria and Archaea. Springer Berlin Heidelberg, p. 221-250 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

CRISPR-Cas Systems
Clustered Regularly Interspaced Short Palindromic Repeats
Viruses
Horizontal Gene Transfer
Viral Genome

Drug Discovery and Development via Synthetic Biology

Cobb, R. E., Luo, Y., Freestone, T. & Zhao, H., Aug 27 2013, Synthetic Biology. Elsevier Inc., p. 183-206 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic Biology
Drug Discovery
Multigene Family
Biological Products
Erythromycin

Employing the biology of successful fracture repair to heal critical size bone defects

Cameron, J. A., Milner, D. J., Lee, J. S., Cheng, J., Fang, N. X. & Jasiuk, I. M., Apr 29 2013, New Perspectives in Regeneration. p. 113-132 20 p. (Current Topics in Microbiology and Immunology; vol. 367).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bone and Bones
Bone Regeneration
Blood Vessels
Osteogenesis
Extremities

Functional DNA-integrated nanomaterials for biosensing

Li, L. & Lu, Y., Aug 1 2013, DNA Nanotechnology: From Structure to Function. Springer-Verlag Berlin Heidelberg, Vol. 9783642360770. p. 277-305 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanostructures
Nanostructured materials
DNA
Nanoparticles
Molecules

Gene and Operon Fusions

Slauch, J. M., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 173-176 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Fusion
operon
Operon
Fusion reactions
Genes

Genomic Changes in Response to 110 Cycles of Selection for Seed Protein and Oil Concentration in Maize

Lucas, C. J., Zhao, H., Schneerman, M. & Moose, S. P., Feb 5 2013, Seed Genomics. Wiley Blackwell, p. 217-236 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Zea mays
Seeds
Oils
genomics
oils

Imaging and tracking of bone marrow-derived immune and stem cells

Zhao, Y., Bower, A. J., Graf, B. W., Boppart, M. D. & Boppart, S. A., Sep 4 2013, Imaging and Tracking Stem Cells: Methods and Protocols. p. 57-76 20 p. (Methods in Molecular Biology; vol. 1052).

Research output: Chapter in Book/Report/Conference proceedingChapter

Stem Cells
Bone Marrow
Microscopy
Bone Marrow Cells
Regeneration

Insights into Lignin Degradation and its Potential Industrial Applications

Abdel-Hamid, A. M., Solbiati, J. O. & Cann, I., Jan 1 2013, Advances in Applied Microbiology. Academic Press Inc., p. 1-28 28 p. (Advances in Applied Microbiology; vol. 82).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lignin
manganese peroxidase
Peroxidases
Laccase
Peroxidase

In Vivo Synthesis of Tissues and Organs

Harley, B. A. & Yannas, I. V., Nov 1 2013, Principles of Tissue Engineering: Fourth Edition. Elsevier Inc., p. 325-355 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Regeneration
Tissue
Extracellular Matrix
Scaffolds
Wounds and Injuries

Mechanophores for self-healing applications

Diesendruck, C. E. & Moore, J. S., Jun 24 2013, Self-Healing Polymers: From Principles to Applications. Wiley-VCH Verlag, p. 193-214 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metalloprotein Design

Lu, Y., Chakraborty, S., Miner, K. D., Wilson, T. D., Mukherjee, A., Yu, Y., Liu, J. & Marshall, N. M., Aug 1 2013, Comprehensive Inorganic Chemistry II (Second Edition): From Elements to Applications. Elsevier Ltd, Vol. 3. p. 565-593 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metalloproteins
Nitrogen fixation
Signal transduction
Proteins
Photosynthesis

Molecular Clock

Wang, M. & Caetano-Anolles, G., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 461-462 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Evolution
Clocks
Macromolecules

New approaches in microbial pathogen detection

Kahyaoglu, L. N. & Irudayaraj, J. M. K., Jul 1 2013, Advances in Microbial Food Safety. Elsevier Ltd, Vol. 1. p. 202-226 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

microbial detection
Pathogens
Viruses
viruses
Hepatitis E virus

New Mass Spectrometric Approaches for Uncovering Neuropeptides

Hou, X. & Sweedler, J. V., Aug 29 2013, Handbook of Biologically Active Peptides. Elsevier Inc., p. 1749-1756 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuropeptides

Parsimony

Olsen, G. J., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 229-232 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Systematic errors
data analysis

Pathway engineering as an enabling synthetic biology tool

Eriksen, D. T., Li, S. & Zhao, H., Aug 27 2013, Synthetic Biology. Elsevier Inc., p. 43-61 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic Biology
Metabolic Networks and Pathways
Glucaric Acid

Pattern recognition applied to spectroscopy: Conventional methods and future directions

Craig, A. P., Franca, A. S. & Irudayaraj, J. M. K., Mar 1 2013, Pattern Recognition: Practices, Perspectives and Challenges. Nova Science Publishers, Inc., p. 1-45 45 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pattern recognition
Spectroscopy
Linear regression
Principal component analysis
Support vector machines

Rational Design of Protein Cages for Alternative Enzymatic Functions

Marshall, N. M., Miner, K. D., Wilson, T. D. & Lu, Y., Apr 2 2013, Coordination Chemistry in Protein Cages: Principles, Design, and Applications. John Wiley and Sons, p. 111-147 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteins
Catalysis
Scaffolds
Electrons
Inorganic Chemistry

RNA World

Caetano-Anolles, G., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 298-300 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA
Biochemistry
Molecules
Transcription
Metabolism

Self-healing epoxies and their composites

Jin, H., Hart, K. R., Coppola, A. M., Gergely, R. C., Moore, J. S., Sottos, N. R. & White, S. R., Jun 24 2013, Self-Healing Polymers: From Principles to Applications. Wiley-VCH Verlag, p. 361-380 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fracture toughness
Fatigue of materials
Composite materials

Stochastic Simulations of Cellular Processes: From Single Cells to Colonies

Cole, J., Hallock, M. J., Labhsetwar, P., Peterson, J. R., Stone, J. E. & Luthey-Schulten, Z. A., Dec 1 2013, Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. Elsevier Inc., p. 277-293 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemistry
Metabolism
Genes
Gene expression
Escherichia coli

Synthesis of layered, graded bioscaffolds

Weisgerber, D. W., Caliari, S. R. & Harley, B. A., Jan 1 2013, Structural Interfaces and Attachments in Biology. Springer New York, Vol. 9781461433170. p. 351-371 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Collagen
Scaffolds
Mechanics
Ligaments
Tendons

Temporal patterning of neural progenitors in drosophila

Li, X., Chen, Z. & Desplan, C., 2013, Current Topics in Developmental Biology. Academic Press Inc., p. 69-96 28 p. (Current Topics in Developmental Biology; vol. 105).

Research output: Chapter in Book/Report/Conference proceedingChapter

Drosophila
Transcription Factors
Neurogenesis
Mental Competency
Neurons

Urinary Tract Trauma

Phillips, H., Jan 4 2013, Small Animal Soft Tissue Surgery. Wiley Blackwell, p. 587-599 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

urinary tract
Urinary Tract
bladder
Retroperitoneal Space
Urinary Bladder

Voluntary Approaches to Environmental Protection

Khanna, M. & Brouhle, K., Jan 1 2013, Environment. Elsevier Inc., Vol. 3-3. p. 226-233 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Voluntary approach
Environmental protection
Environmental performance
Environmental responsibility
Pollution control
2012

A multiple systems approach to causal reasoning

Patterson, R. & Barbey, A. K., Dec 1 2012, The Neural Basis of Human Belief Systems. Taylor and Francis, p. 43-69 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Systems Analysis

A survey of text classification algorithms

Aggarwal, C. C. & Zhai, C., Aug 1 2012, Mining Text Data. Springer US, Vol. 9781461432234. p. 163-222 60 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Information retrieval
Data mining
Learning systems
Marketing

A survey of text clustering algorithms

Aggarwal, C. C. & Zhai, C., Aug 1 2012, Mining Text Data. Springer US, Vol. 9781461432234. p. 77-128 52 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Collaborative filtering
Clustering algorithms
Data mining
Visualization

Conducting transformative consumer research: Lessons learned in moving from basic research to transformative impact in subsistence marketplaces

Viswanathan, M., Jan 1 2012, Transformative Consumer Research: For Personal and Collective Well-Being. Taylor and Francis, p. 109-130 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Subsistence marketplaces
Consumer research
Basic research
Lessons learned
Business strategy

Discovery and biosynthesis of phosphonate and phosphinate natural products

Peck, S. C., Gao, J. & van der Donk, W. A., 2012, Methods in Enzymology. Academic Press Inc., p. 101-123 23 p. (Methods in Enzymology; vol. 516).

Research output: Chapter in Book/Report/Conference proceedingChapter

Organophosphonates
Biosynthesis
Biosynthetic Pathways
Biological Products
Esters

DNA assembler: A synthetic biology tool for characterizing and engineering natural product gene clusters

Shao, Z. & Zhao, H., 2012, Natural Product Biosynthesis by Microorganisms and Plants, Part C. Academic Press Inc., p. 203-224 22 p. (Methods in Enzymology; vol. 517).

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic Biology
Biosynthetic Pathways
Multigene Family
Biological Products
Genes

DNA assembler method for construction of zeaxanthin-producing strains of saccharomyces cerevisiae

Shao, Z., Luo, Y. & Zhao, H., Jul 27 2012, Microbial Carotenoids From Fungi: Methods and Protocols. Jose-Luis, B. (ed.). p. 251-262 12 p. (Methods in Molecular Biology; vol. 898).

Research output: Chapter in Book/Report/Conference proceedingChapter

Saccharomyces cerevisiae
Synthetic Biology
Metabolic Engineering
Homologous Recombination
DNA

DNA evidence of a prehistoric Athapaskan migration from the subarctic to the southwest of north America

Malhi, R. S., Jan 1 2012, From the Land of Ever Winter to the American Southwest: Athapaskan Migrations, Mobility, and Ethnogenesis. University of Utah, p. 241-248 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

migration
evidence
Southwest
DNA Evidence

Examining "Developmental Me": A Review of Narcissism as a Life Span Construct

Hill, P. L. & Roberts, B. W., Mar 12 2012, The Handbook of Narcissism and Narcissistic Personality Disorder: Theoretical Approaches, Empirical Findings, and Treatments. John Wiley and Sons, p. 191-201 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Personality Development
Narcissism

Exploring the zebra finch Taeniopygia guttata as a novel animal model for the speech-language deficit of fragile X syndrome

Winograd, C. & Ceman, S., Jan 1 2012, Modeling Fragile X Syndrome. Denman, R. (ed.). p. 181-197 17 p. (Results and Problems in Cell Differentiation; vol. 54).

Research output: Chapter in Book/Report/Conference proceedingChapter

Finches
Fragile X Syndrome
Equidae
Language
Animal Models

GABAA receptors

Möhler, H., Benke, D., Rudolph, U. & Fritschy, J. M., Mar 22 2012, Ion Channels: From Structure to Function. Oxford University Press

Research output: Chapter in Book/Report/Conference proceedingChapter

GABA-A Receptors

Genetics of Secondary Metabolism and Herbivore Resistance in Plants

Berenbaum, M. R. & Zangerl, A. R., Dec 2 2012, Ecological and Evolutionary Processes. Elsevier Inc., Vol. 2. p. 415-438 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Secondary Metabolism
Herbivory
herbivore
herbivores
metabolism

Herbivores: Their Interactions with Secondary Plant Metabolites Ecological and Evolutionary Processes: Second Edition

Rosenthal, G. A. & Berenbaum, M. R., Dec 2 2012, Ecological and Evolutionary Processes. Elsevier Inc., Vol. 2. p. 1-493 493 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Herbivory
Insects
Molecular Biology
herbivore
metabolite

Heterologous Gene Expression in Filamentous Fungi

Su, X., Schmitz, G., Zhang, M., Mackie, R. I. & Cann, I., 2012, Advances in Applied Microbiology. Academic Press Inc., p. 1-61 61 p. (Advances in Applied Microbiology; vol. 81).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fungi
Gene Expression
Proteins
Recombinant Proteins
Enzymes

Interferometric synthetic aperture microscopy

Carney, P. S., Adie, S. & Boppart, S. A., Jan 1 2012, Emerging Imaging Technologies in Medicine. CRC Press, p. 293-301 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic apertures
synthetic apertures
Optical Coherence Tomography
Optical tomography
Microscopy

In vitro selection of metal Ion-Selective DNAzymes

Ihms, H. E. & Lu, Y., Mar 19 2012, Ribozymes: Methods and Protocols. Hartig, J. (ed.). p. 297-316 20 p. (Methods in Molecular Biology; vol. 848).

Research output: Chapter in Book/Report/Conference proceedingChapter

Catalytic DNA
Metals
Ions
In Vitro Techniques
Nucleic Acids

Microbial decontamination of food by power ultrasound

Zhou, B., Lee, H. & Feng, H., Jun 2012, Microbial Decontamination in the Food Industry: Novel Methods and Applications. Elsevier Ltd, p. 300-321 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Decontamination
decontamination
Ultrasonics
Food
Food Handling

Mutagenic inverted repeats assisted genome engineering (MIRAGE) in saccharomyces cerevisiae: Deletion of gal7

Nair, N. U. & Zhao, H., Jan 20 2012, Microbial Metabolic Engineering: Methods and Protocols. Cheng, Q. (ed.). p. 63-73 11 p. (Methods in Molecular Biology; vol. 834).

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic Biology
Metabolic Engineering
Systems Biology
Point Mutation
Saccharomyces cerevisiae

Obsidian dating and source exploitation studies in Africa: Implications for the evolution of human behavior

Ambrose, S. H., Dec 1 2012, Obsidian and Ancient Manufactured Glasses. University of New Mexico Press, p. 56-72 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ethiopia
Kenya
exploitation
Tanzania
Eritrea