Research Output 1973 2020

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2012

DNA assembler: A synthetic biology tool for characterizing and engineering natural product gene clusters

Shao, Z. & Zhao, H., 2012, Natural Product Biosynthesis by Microorganisms and Plants, Part C. Academic Press Inc., p. 203-224 22 p. (Methods in Enzymology; vol. 517).

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic Biology
Biosynthetic Pathways
Multigene Family
Biological Products
Genes

DNA assembler method for construction of zeaxanthin-producing strains of saccharomyces cerevisiae

Shao, Z., Luo, Y. & Zhao, H., Jul 27 2012, Microbial Carotenoids From Fungi: Methods and Protocols. Jose-Luis, B. (ed.). p. 251-262 12 p. (Methods in Molecular Biology; vol. 898).

Research output: Chapter in Book/Report/Conference proceedingChapter

Saccharomyces cerevisiae
Synthetic Biology
Metabolic Engineering
Homologous Recombination
DNA

DNA evidence of a prehistoric Athapaskan migration from the subarctic to the southwest of north America

Malhi, R. S., Jan 1 2012, From the Land of Ever Winter to the American Southwest: Athapaskan Migrations, Mobility, and Ethnogenesis. University of Utah, p. 241-248 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

migration
evidence
Southwest
DNA Evidence

Examining "Developmental Me": A Review of Narcissism as a Life Span Construct

Hill, P. L. & Roberts, B. W., Mar 12 2012, The Handbook of Narcissism and Narcissistic Personality Disorder: Theoretical Approaches, Empirical Findings, and Treatments. John Wiley and Sons, p. 191-201 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Personality Development
Narcissism

Exploring the zebra finch Taeniopygia guttata as a novel animal model for the speech-language deficit of fragile X syndrome

Winograd, C. & Ceman, S., Jan 1 2012, Modeling Fragile X Syndrome. Denman, R. (ed.). p. 181-197 17 p. (Results and Problems in Cell Differentiation; vol. 54).

Research output: Chapter in Book/Report/Conference proceedingChapter

Finches
Fragile X Syndrome
Equidae
Language
Animal Models

Genetics of Secondary Metabolism and Herbivore Resistance in Plants

Berenbaum, M. R. & Zangerl, A. R., Dec 2 2012, Ecological and Evolutionary Processes. Elsevier Inc., Vol. 2. p. 415-438 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Secondary Metabolism
Herbivory
herbivore
herbivores
metabolism

Herbivores: Their Interactions with Secondary Plant Metabolites Ecological and Evolutionary Processes: Second Edition

Rosenthal, G. A. & Berenbaum, M. R., Dec 2 2012, Ecological and Evolutionary Processes. Elsevier Inc., Vol. 2. p. 1-493 493 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Herbivory
Insects
Molecular Biology
herbivore
metabolite

Heterologous Gene Expression in Filamentous Fungi

Su, X., Schmitz, G., Zhang, M., Mackie, R. I. & Cann, I., 2012, Advances in Applied Microbiology. Academic Press Inc., p. 1-61 61 p. (Advances in Applied Microbiology; vol. 81).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fungi
Gene Expression
Proteins
Recombinant Proteins
Enzymes

Interferometric synthetic aperture microscopy

Carney, P. S., Adie, S. & Boppart, S. A., Jan 1 2012, Emerging Imaging Technologies in Medicine. CRC Press, p. 293-301 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic apertures
synthetic apertures
Optical Coherence Tomography
Optical tomography
Microscopy

In vitro selection of metal Ion-Selective DNAzymes

Ihms, H. E. & Lu, Y., Mar 19 2012, Ribozymes: Methods and Protocols. Hartig, J. (ed.). p. 297-316 20 p. (Methods in Molecular Biology; vol. 848).

Research output: Chapter in Book/Report/Conference proceedingChapter

Catalytic DNA
Metals
Ions
In Vitro Techniques
Nucleic Acids

Microbial decontamination of food by power ultrasound

Zhou, B., Lee, H. & Feng, H., Jun 2012, Microbial Decontamination in the Food Industry: Novel Methods and Applications. Elsevier Ltd, p. 300-321 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Decontamination
decontamination
Ultrasonics
Food
Food Handling

Mutagenic inverted repeats assisted genome engineering (MIRAGE) in saccharomyces cerevisiae: Deletion of gal7

Nair, N. U. & Zhao, H., Jan 20 2012, Microbial Metabolic Engineering: Methods and Protocols. Cheng, Q. (ed.). p. 63-73 11 p. (Methods in Molecular Biology; vol. 834).

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic Biology
Metabolic Engineering
Systems Biology
Point Mutation
Saccharomyces cerevisiae

Obsidian dating and source exploitation studies in Africa: Implications for the evolution of human behavior

Ambrose, S. H., Dec 1 2012, Obsidian and Ancient Manufactured Glasses. University of New Mexico Press, p. 56-72 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ethiopia
Kenya
exploitation
Tanzania
Eritrea

Optimization of the molecular dynamics method for simulations of DNA and Ion transport through biological nanopores

Wells, D. B., Bhattacharya, S., Carr, R., Maffeo, C., Ho, A., Comer, J. & Aksimentiev, A., May 8 2012, Nanopore-Based Technology. Gracheva, M. E. (ed.). p. 165-186 22 p. (Methods in Molecular Biology; vol. 870).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanopores
Ion Transport
Molecular Dynamics Simulation
Ions
DNA

Papaya genome and genomics

Ming, R. R., Yu, Q. & Moore, P. H., Nov 1 2012, Genomics of Tree Crops. Springer New York, Vol. 9781461409205. p. 241-259 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carica
papayas
Genomics
Genome
genomics

Papaya sex chromosomes

Gschwend, A. R. & Ming, R., Feb 1 2012, New Insights on Plant Sex Chromosomes. Nova Science Publishers, Inc., p. 51-66 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Carica
Sex Chromosomes
sex chromosomes
papayas
X Chromosome

Pasteurella multocida toxin interaction with host cells: Entry and cellular effects

Wilson, B. A. & Ho, M., Nov 8 2012, Pasteurella multocida: Molecular Biology, Toxins and Infection. Aktories, K., Orth, J. & Adler, B. (eds.). p. 93-111 19 p. (Current Topics in Microbiology and Immunology; vol. 361).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pasteurella multocida
G12-G13 GTP-Binding Protein alpha Subunits
Bacterial Toxins
Calcium Signaling
Bacterial Proteins

Probabilistic models for text mining

Sun, Y., Deng, H. & Han, J., Aug 1 2012, Mining Text Data. Springer US, Vol. 9781461432234. p. 259-295 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hidden Markov models
Statistical Models
Modeling languages

Strain Improvement via Evolutionary Engineering

Kim, B., Du, J. & Zhao, H., Oct 24 2012, Engineering Complex Phenotypes in Industrial Strains. John Wiley and Sons, p. 111-131 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Surface Characteristics of Fresh Produce and their Impact on Attachment and Removal of Human Pathogens on Produce Surfaces

Wang, H., Zhou, B. & Feng, H., Feb 20 2012, Decontamination of Fresh and Minimally Processed Produce. Wiley Blackwell, p. 43-57 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sanitation
fresh produce
Pathogens
Vegetables
Fruit

Synthesis of polypeptides by ring-opening polymerization of α-Amino acid N-carboxyanhydrides

Cheng, J. & Deming, T. J., Jan 30 2012, Peptide-Based Materials. Deming, T. (ed.). p. 1-26 26 p. (Topics in Current Chemistry; vol. 310).

Research output: Chapter in Book/Report/Conference proceedingChapter

Ring opening polymerization
Amino Acids
Peptides

T cell receptor engineering

Stone, J. D., Chervin, A. S., Aggen, D. H. & Kranz, D. M., 2012, Methods in Enzymology. Academic Press Inc., p. 189-222 34 p. (Methods in Enzymology; vol. 503).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cell Engineering
T-cells
T-Cell Antigen Receptor
T-Lymphocytes
Major Histocompatibility Complex

The notable and the null: Using mixed methods to understand the diverse impacts of residential mobility programs

DeLuca, S., Duncan, G. J., Keels, M. & Mendenhall, R., Dec 1 2012, Neighbourhood effects research: New perspectives. Springer Netherlands, Vol. 9789400723092. p. 195-223 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

effect on employment
policy approach
mental health
poverty
interview

Tumors of the Skeletal System

Ehrhart, N. P., Ryan, S. D. & Fan, T. M., Nov 1 2012, Withrow and MacEwen's Small Animal Clinical Oncology: Fifth Edition. Elsevier Inc., p. 463-503 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

musculoskeletal system
neoplasms
Neoplasms
2013

A multi-graph spectral framework for mining multi-source anomalies

Gao, J., Du, N., Fan, W., Turaga, D., Parthasarathy, S. & Han, J., Jan 1 2013, Graph Embedding for Pattern Analysis. Springer New York, p. 205-227 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Intrusion detection
Explosions
Health
Monitoring

A survey of datamining methods for sensor network bug diagnosis

Abdelzaher, T. & Han, J., Jul 1 2013, Managing and Mining Sensor Data. Springer US, Vol. 9781461463092. p. 429-458 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sensor networks
Data mining
Computer debugging

A survey of RFID data processing

Aggarwal, C. C. & Han, J., Jul 1 2013, Managing and Mining Sensor Data. Springer US, Vol. 9781461463092. p. 349-382 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Radio frequency identification (RFID)
Information management
Processing
Logistics
Sensors

BAC manipulations for making BAC transgene arrays

Khanna, N., Bian, Q., Plutz, M. & Belmont, A. S., Jan 1 2013, Imaging Gene Expression: Methods and Protocols. Humana Press Inc., p. 197-210 14 p. (Methods in Molecular Biology; vol. 1042).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bacterial Artificial Chromosomes
Transgenes
Gene Amplification
Plasmids
Artificial Chromosomes

Cell signaling pathways in vertebrate lens regeneration

Henry, J. J., Thomas, A. G., Hamilton, P. W., Moore, L. & Perry, K. J., Apr 29 2013, New Perspectives in Regeneration. p. 75-98 24 p. (Current Topics in Microbiology and Immunology; vol. 367).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lenses
Vertebrates
Regeneration
Epithelium
Crystalline Lens

Construction and engineering of large biochemical pathways via DNA assembler

Shao, Z. & Zhao, H., Sep 20 2013, Synthetic Biology. Polizzi, K. & Kontoravdi, C. (eds.). p. 85-106 22 p. (Methods in Molecular Biology; vol. 1073).

Research output: Chapter in Book/Report/Conference proceedingChapter

Multigene Family
DNA
Synthetic Biology
Metabolic Engineering
Homologous Recombination

Construction and screening of an antigen-derived peptide library displayed on yeast cell surface for CD4+ T cell epitope identification

Wen, F. & Zhao, H., Sep 20 2013, Immunoproteomics: Methods and Protocols. Fulton, K. & Twine, S. (eds.). p. 245-264 20 p. (Methods in Molecular Biology; vol. 1061).

Research output: Chapter in Book/Report/Conference proceedingChapter

Peptide Library
T-Lymphocyte Epitopes
Yeasts
Major Histocompatibility Complex
Antigens

CRISPR-Cas systems to probe ecological diversity and host-viral interactions

Held, N. L., Childs, L. M., Davison, M., Weitz, J. S., Whitaker, R. & Bhaya, D., Jan 1 2013, CRISPR-Cas Systems: RNA-Mediated Adaptive Immunity in Bacteria and Archaea. Springer Berlin Heidelberg, p. 221-250 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

CRISPR-Cas Systems
Clustered Regularly Interspaced Short Palindromic Repeats
Viruses
Horizontal Gene Transfer
Viral Genome

Drug Discovery and Development via Synthetic Biology

Cobb, R. E., Luo, Y., Freestone, T. & Zhao, H., Aug 27 2013, Synthetic Biology. Elsevier Inc., p. 183-206 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic Biology
Drug Discovery
Multigene Family
Biological Products
Erythromycin

Employing the biology of successful fracture repair to heal critical size bone defects

Cameron, J. A., Milner, D. J., Lee, J. S., Cheng, J., Fang, N. X. & Jasiuk, I. M., Apr 29 2013, New Perspectives in Regeneration. p. 113-132 20 p. (Current Topics in Microbiology and Immunology; vol. 367).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bone and Bones
Bone Regeneration
Blood Vessels
Osteogenesis
Extremities

Functional DNA-integrated nanomaterials for biosensing

Li, L. & Lu, Y., Aug 1 2013, DNA Nanotechnology: From Structure to Function. Springer-Verlag Berlin Heidelberg, Vol. 9783642360770. p. 277-305 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanostructures
Nanostructured materials
DNA
Nanoparticles
Molecules

Gene and Operon Fusions

Slauch, J. M., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 173-176 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Fusion
operon
Operon
Fusion reactions
Genes

Genomic Changes in Response to 110 Cycles of Selection for Seed Protein and Oil Concentration in Maize

Lucas, C. J., Zhao, H., Schneerman, M. & Moose, S. P., Feb 5 2013, Seed Genomics. Wiley Blackwell, p. 217-236 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Zea mays
Seeds
Oils
genomics
oils

Imaging and tracking of bone marrow-derived immune and stem cells

Zhao, Y., Bower, A. J., Graf, B. W., Boppart, M. D. & Boppart, S. A., Sep 4 2013, Imaging and Tracking Stem Cells: Methods and Protocols. p. 57-76 20 p. (Methods in Molecular Biology; vol. 1052).

Research output: Chapter in Book/Report/Conference proceedingChapter

Stem Cells
Bone Marrow
Microscopy
Bone Marrow Cells
Regeneration

Insights into Lignin Degradation and its Potential Industrial Applications

Abdel-Hamid, A. M., Solbiati, J. O. & Cann, I., Jan 1 2013, Advances in Applied Microbiology. Academic Press Inc., p. 1-28 28 p. (Advances in Applied Microbiology; vol. 82).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lignin
manganese peroxidase
Peroxidases
Laccase
Peroxidase

In Vivo Synthesis of Tissues and Organs

Harley, B. A. & Yannas, I. V., Nov 1 2013, Principles of Tissue Engineering: Fourth Edition. Elsevier Inc., p. 325-355 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Regeneration
Tissue
Extracellular Matrix
Scaffolds
Wounds and Injuries

Mechanophores for self-healing applications

Diesendruck, C. E. & Moore, J. S., Jun 24 2013, Self-Healing Polymers: From Principles to Applications. Wiley-VCH Verlag, p. 193-214 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metalloprotein Design

Lu, Y., Chakraborty, S., Miner, K. D., Wilson, T. D., Mukherjee, A., Yu, Y., Liu, J. & Marshall, N. M., Aug 1 2013, Comprehensive Inorganic Chemistry II (Second Edition): From Elements to Applications. Elsevier Ltd, Vol. 3. p. 565-593 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metalloproteins
Nitrogen fixation
Signal transduction
Proteins
Photosynthesis

Molecular Clock

Wang, M. & Caetano-Anolles, G., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 461-462 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Evolution
Clocks
Macromolecules

New Mass Spectrometric Approaches for Uncovering Neuropeptides

Hou, X. & Sweedler, J. V., Aug 29 2013, Handbook of Biologically Active Peptides. Elsevier Inc., p. 1749-1756 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuropeptides

Parsimony

Olsen, G. J., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 229-232 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Systematic errors
data analysis

Pathway engineering as an enabling synthetic biology tool

Eriksen, D. T., Li, S. & Zhao, H., Aug 27 2013, Synthetic Biology. Elsevier Inc., p. 43-61 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic Biology
Metabolic Networks and Pathways
Glucaric Acid

Rational Design of Protein Cages for Alternative Enzymatic Functions

Marshall, N. M., Miner, K. D., Wilson, T. D. & Lu, Y., Apr 2 2013, Coordination Chemistry in Protein Cages: Principles, Design, and Applications. John Wiley and Sons, p. 111-147 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteins
Catalysis
Scaffolds
Electrons
Inorganic Chemistry

RNA World

Caetano-Anolles, G., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 298-300 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA
Biochemistry
Molecules
Transcription
Metabolism

Self-healing epoxies and their composites

Jin, H., Hart, K. R., Coppola, A. M., Gergely, R. C., Moore, J. S., Sottos, N. R. & White, S. R., Jun 24 2013, Self-Healing Polymers: From Principles to Applications. Wiley-VCH Verlag, p. 361-380 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fracture toughness
Fatigue of materials
Composite materials

Stochastic Simulations of Cellular Processes: From Single Cells to Colonies

Cole, J., Hallock, M. J., Labhsetwar, P., Peterson, J. R., Stone, J. E. & Luthey-Schulten, Z. A., Dec 1 2013, Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. Elsevier Inc., p. 277-293 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemistry
Metabolism
Genes
Gene expression
Escherichia coli