Carl R. Woese Institute for Genomic Biology

2020

Compact quantum dots for quantitative cytology

Le, P., Chitoor, S., Tu, C., Lim, S. J. & Smith, A. M., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 147-158 12 p. (Methods in Molecular Biology; vol. 2064).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Optically guided mass spectrometry to screen microbial colonies for directed enzyme evolution

Xue, P., Si, T. & Zhao, H., Jan 1 2020, (Accepted/In press) Methods in Enzymology. Academic Press Inc., (Methods in Enzymology).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2019

A neo-socioanalytic model of personality development

Nye, C. D. & Roberts, B. W., Jan 1 2019, Work Across the Lifespan. Elsevier, p. 47-79 33 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Caste determination in arthropods

Dolezal, A. G., Jan 1 2019, Encyclopedia of Animal Behavior. Elsevier, p. 691-698 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

CHAPTER 2: Design and Engineering of Heme Enzymes with O₂-dependent Catalytic Activity

Cui, C., Reed, J. H., Mirts, E. N. & Lu, Y., Jan 1 2019, Dioxygen-dependent Heme Enzymes. Ikeda-Saito, M. & Raven, E. (eds.). 13 ed. Royal Society of Chemistry, p. 37-62 26 p. (RSC Metallobiology; vol. 2019-January, no. 13).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Construction and Screening of an Antigen-Derived Peptide Library Displayed on Yeast Cell Surface for CD4+ T Cell Epitope Identification

Wen, F., Smith, M. R. & Zhao, H., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 213-234 22 p. (Methods in Molecular Biology; vol. 2024).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Delta integration CRISPR-Cas (Di-CRISPR) in saccharomyces cerevisiae

Shi, S., Liang, Y., Ang, E. L. & Zhao, H., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 73-91 19 p. (Methods in Molecular Biology; vol. 1927).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Lentivirus-mediated RNAi in skeletal myogenesis

Kim, D., Reyes-Ordoñez, A. & Chen, J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 95-110 16 p. (Methods in Molecular Biology; vol. 1889).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Nanodiscs as a New Tool to Examine Lipid–Protein Interactions

Denisov, I. G., Schuler, M. A. & Sligar, S. G., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 645-671 27 p. (Methods in Molecular Biology; vol. 2003).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Neurogenetics of motivation for physical activity

Rhodes, J. S., Jan 1 2019, Routledge Handbook of Sport and Exercise Systems Genetics. Taylor and Francis, p. 94-106 13 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Neuropeptidomics of the mammalian brain

Xie, F., Anapindi, K. D. B., Romanova, E. V. & Sweedler, J. V., Jan 1 2019, Neuromethods. Humana Press Inc., p. 161-177 17 p. (Neuromethods; vol. 146).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Sex Determination, Sexual Development, and Sex Change in Slipper Snails

Lesoway, M. P. & Henry, J. Q., Jan 1 2019, Results and Problems in Cell Differentiation. Springer-Verlag Berlin Heidelberg, p. 155-182 28 p. (Results and Problems in Cell Differentiation; vol. 68).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Sociogenomics

Grozinger, C. M. & Robinson, G. E., Jan 1 2019, Encyclopedia of Animal Behavior. Elsevier, p. 257-261 5 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Tunneling—Percolation behavior of graphene-encapsulated whiskers as electroconductive fillers for ceramics

Hussainova, I., Ivanov, R., Sudhir Kale, S. & Jasiuk, I., Jan 1 2019, Advanced Structured Materials. Springer-Verlag Berlin Heidelberg, p. 131-139 9 p. (Advanced Structured Materials; vol. 95).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2018

Applying advanced dna assembly methods to generate pathway libraries

Eriksen, D. T., Chao, R. & Zhao, H., Mar 15 2018, Synthetic Biology: Parts, Devices and Applications. Wiley-VCH Verlag, p. 331-347 17 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

A practical guide to molecular dynamics simulations of DNA origami systems

Yoo, J., Li, C. Y., Slone, S. M., Maffeo, C. & Aksimentiev, A., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 209-229 21 p. (Methods in Molecular Biology; vol. 1811).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example

Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y. S., Blaschek, H. P. & Wang, Y., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 297-325 29 p. (Methods in Molecular Biology; vol. 1772).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Big data in agriculture and their analyses

Shrivastava, S. & Marshall-Colon, A., Jan 1 2018, Encyclopedia of Food Security and Sustainability. Elsevier, p. 233-237 5 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Bioethanol production from corn

Kumar, D. & Singh, V., Jan 1 2018, Corn: Chemistry and Technology, 3rd Edition. Elsevier, p. 615-631 17 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Carl R. Woese and the journey toward a universal tree of life

Fouke, B. W., Solai, K., Jones, S. L., Smith, E. M., Fouke, K. W., Fouke, K. E., Lutz, C. C., Sivaguru, M. & Fried, G. A., Dec 7 2018, Handbook of Astrobiology. CRC Press, p. 555-565 11 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Coupling fluxes, enzymes, and regulation in genome-scale metabolic models

Jensen, P. A., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 337-351 15 p. (Methods in Molecular Biology; vol. 1716).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Deregulation of RNA metabolism in microsatellite expansion diseases

Misra, C., Lin, F. & Kalsotra, A., Jan 1 2018, Advances in Neurobiology. Springer New York LLC, p. 213-238 26 p. (Advances in Neurobiology; vol. 20).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Directed evolution of targeted recombinases for genome engineering

Sirk, S. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 89-102 14 p. (Methods in Molecular Biology; vol. 1867).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals

Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C. & Jin, Y. S., Jan 1 2018, Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, p. 175-215 41 p. (Advances in Biochemical Engineering/Biotechnology; vol. 162).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Female antiandrogens

Barakat, R. & Ko, C. M. J., Jan 1 2018, Encyclopedia of Reproduction. Elsevier, p. 748-752 5 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Female antiestrogens

Barakat, R., Park, C. J., Perez, P. A., Chiu, K. & Ko, C. M., Jan 1 2018, Encyclopedia of Reproduction. Elsevier, p. 740-747 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Female Reproductive C: Uterine Tumors and the Environment

Nowak, R. A., Bi, J. J., Koohestani, F., Mesquita, F. S. & Erbach, G. T., Jan 1 2018, Reproductive and Endocrine Toxicology. Elsevier Inc., Vol. 4-15. p. 438-469 32 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Genetic Mouse Models for Female Reproductive Toxicology Studies

Dávila, J., Li, Q. & Bagchi, I. C., Jan 1 2018, Reproductive and Endocrine Toxicology. Elsevier Inc., Vol. 4-15. p. 470-494 25 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Genetic techniques for studies of methyl-coenzyme M reductase from Methanosarcina acetivorans C2A

Nayak, D. D. & Metcalf, W. W., 2018, Methods in Enzymology. Armstrong, F. (ed.). Academic Press Inc., p. 325-347 23 p. (Methods in Enzymology; vol. 613).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Gonadotropin receptors

Eckstrum, K. S. & Raetzman, L. T., Jan 1 2018, Encyclopedia of Reproduction. Elsevier, p. 137-141 5 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

HVAC system modeling and control: Vapor compression system modeling and control

Rasmussen, B. P., Price, C., Koeln, J., Keating, B. & Alleyne, A., Jan 1 2018, Advances in Industrial Control. 9783319684611 ed. Springer International Publishing, p. 73-103 31 p. (Advances in Industrial Control; no. 9783319684611).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

In vitro assay for measuring receptor-kinase activity in the bacillus subtilis chemotaxis pathway

Walukiewicz, H. E., Ordal, G. W. & Rao, C. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 95-105 11 p. (Methods in Molecular Biology; vol. 1729).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Male ART in animal species

Knox, R. V. & Miller, D. J., Jan 1 2018, Encyclopedia of Reproduction. Elsevier, p. 547-552 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Manufacturing and delivering genome-editing proteins

Liu, J., Liang, Y. J., Ren, P. L. & Gaj, T., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 253-273 21 p. (Methods in Molecular Biology; vol. 1867).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Measurement and maintenance of corn quality

Paulsen, M. R., Singh, M. & Singh, V., Jan 1 2018, Corn: Chemistry and Technology, 3rd Edition. Elsevier, p. 165-211 47 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Metabolic Engineering of Saccharomyces cerevisiae Using a Trifunctional CRISPR/Cas System for Simultaneous Gene Activation, Interference, and Deletion

Schultz, C., Lian, J. & Zhao, H., Jan 1 2018, Methods in Enzymology. Scrutton, N. (ed.). Academic Press Inc., p. 265-276 12 p. (Methods in Enzymology; vol. 608).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Multi-zone temperature modeling and control

Koeln, J., Keating, B., Alleyne, A., Price, C. & Rasmussen, B. P., Jan 1 2018, Advances in Industrial Control. 9783319684611 ed. Springer International Publishing, p. 139-166 28 p. (Advances in Industrial Control; no. 9783319684611).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Narcissism as a life span construct: Describing fluctuations using new approaches

Hill, P. L. & Roberts, B. W., Sep 27 2018, Handbook of Trait Narcissism: Key Advances, Research Methods, and Controversies. Springer International Publishing, p. 165-172 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Network dynamics theory of human intelligence

Nikolaidis, A. & Barbey, A. K., Jan 1 2018, The Cambridge Handbook of the Neuroscience of Creativity. Cambridge University Press, p. 382-404 23 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Non-targeted identification of d-amino acid-containing peptides through enzymatic screening, chiral amino acid analysis, and LC-MS

Tai, H. C., Checco, J. W. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 107-118 12 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Online, classroom and wilderness teaching environments: Reaching astrobiology learners of all ages around the world

Fouke, B. W., Fouke, K. W., Murphy, T., Cook, C. N., Michelson, B. F., Cross, J. L., Destefano, L., Fried, G. A., Solai, K., Malinowsky, J. W., Kelly, S. B., Lutz, C. C., Louer, E., Fenlon, C. C., Vasi, N. P., Gulley, A. M. & Sivaguru, M., Dec 7 2018, Handbook of Astrobiology. CRC Press, p. 27-44 18 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter