Research Output 1971 2019

Filter
Chapter
2019

CHAPTER 2: Design and Engineering of Heme Enzymes with O2-dependent Catalytic Activity

Cui, C., Reed, J. H., Mirts, E. N. & Lu, Y., Jan 1 2019, Dioxygen-dependent Heme Enzymes. Ikeda-Saito, M. & Raven, E. (eds.). 13 ed. Royal Society of Chemistry, p. 37-62 26 p. (RSC Metallobiology; vol. 2019-January, no. 13).

Research output: Chapter in Book/Report/Conference proceedingChapter

Heme
Catalyst activity
Enzymes
Oxidoreductases
Biological Phenomena

Lentivirus-mediated RNAi in skeletal myogenesis

Kim, D., Reyes-Ordoñez, A. & Chen, J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 95-110 16 p. (Methods in Molecular Biology; vol. 1889).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lentivirus
Muscle Development
RNA Interference
Small Interfering RNA
Muscle Cells
2018

Applying advanced dna assembly methods to generate pathway libraries

Eriksen, D. T., Chao, R. & Zhao, H., Mar 15 2018, Synthetic Biology: Parts, Devices and Applications. Wiley-VCH Verlag, p. 331-347 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

A practical guide to molecular dynamics simulations of DNA origami systems

Yoo, J., Li, C. Y., Slone, S. M., Maffeo, C. & Aksimentiev, A., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 209-229 21 p. (Methods in Molecular Biology; vol. 1811).

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Dynamics Simulation
DNA
Nucleic Acids

Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example

Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y-S., Blaschek, H-P. M. & Wang, Y., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 297-325 29 p. (Methods in Molecular Biology; vol. 1772).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clostridium beijerinckii
Clustered Regularly Interspaced Short Palindromic Repeats
Bacterial Genomes
Guide RNA
Streptococcus pyogenes

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Computational Biology
Neuropeptides
Peptide Hormones
Post Translational Protein Processing
Proteomics

Coupling fluxes, enzymes, and regulation in genome-scale metabolic models

Jensen, P. A., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 337-351 15 p. (Methods in Molecular Biology; vol. 1716).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome
Enzymes
Practice Guidelines
Software

Deregulation of RNA metabolism in microsatellite expansion diseases

Misra, C., Lin, F. & Kalsotra, A., Jan 1 2018, Advances in Neurobiology. Springer New York LLC, p. 213-238 26 p. (Advances in Neurobiology; vol. 20).

Research output: Chapter in Book/Report/Conference proceedingChapter

Deregulation
Metabolism
Microsatellite Repeats
Myotonic Dystrophy
RNA

Directed evolution of targeted recombinases for genome engineering

Sirk, S., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 89-102 14 p. (Methods in Molecular Biology; vol. 1867).

Research output: Chapter in Book/Report/Conference proceedingChapter

Recombinases
Genome
Catalytic Domain
DNA
Zinc Fingers

Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals

Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C. & Jin, Y-S., Jan 1 2018, Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, p. 175-215 41 p. (Advances in Biochemical Engineering/Biotechnology; vol. 162).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biofuels
Yeast
Saccharomyces cerevisiae
Fossil Fuels
Bioconversion

HVAC system modeling and control: Vapor compression system modeling and control

Rasmussen, B. P., Price, C., Koeln, J., Keating, B. & Alleyne, A. G., Jan 1 2018, Advances in Industrial Control. 9783319684611 ed. Springer International Publishing, p. 73-103 31 p. (Advances in Industrial Control; no. 9783319684611).

Research output: Chapter in Book/Report/Conference proceedingChapter

Vapors
Auxiliary equipment
Intelligent buildings
Refrigeration
Fault detection

In vitro assay for measuring receptor-kinase activity in the bacillus subtilis chemotaxis pathway

Walukiewicz, H. E., Ordal, G. W. & Rao, C. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 95-105 11 p. (Methods in Molecular Biology; vol. 1729).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemotaxis
Bacillus subtilis
Phosphotransferases
Signal Transduction
Carrier Proteins

Manufacturing and delivering genome-editing proteins

Liu, J., Liang, Y. J., Ren, P. L. & Gaj, T., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 253-273 21 p. (Methods in Molecular Biology; vol. 1867).

Research output: Chapter in Book/Report/Conference proceedingChapter

Ribonucleoproteins
Dependovirus
Zinc Fingers
Transgenes
Proteins

Multi-zone temperature modeling and control

Koeln, J., Keating, B., Alleyne, A. G., Price, C. & Rasmussen, B. P., Jan 1 2018, Advances in Industrial Control. 9783319684611 ed. Springer International Publishing, p. 139-166 28 p. (Advances in Industrial Control; no. 9783319684611).

Research output: Chapter in Book/Report/Conference proceedingChapter

Thermal energy
Temperature control
Resistors
Temperature
Capacitors

Network dynamics theory of human intelligence

Nikolaidis, A. & Barbey, A. K., Jan 1 2018, The Cambridge Handbook of the Neuroscience of Creativity. Cambridge University Press, p. 382-404 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Intelligence
Creativity
Aptitude
Brain
Neuroimaging

Non-targeted identification of d-amino acid-containing peptides through enzymatic screening, chiral amino acid analysis, and LC-MS

Tai, H. C., Checco, J. W. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 107-118 12 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Amino Acids
Peptides
Post Translational Protein Processing
Mass Spectrometry

Pathway design, engineering, and optimization

Garcia-Ruiz, E., HamediRad, M. & Zhao, H., Jan 1 2018, Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, (Advances in Biochemical Engineering/Biotechnology; vol. 162).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biofuels
Microorganisms
Enzymes
Pharmaceutical Preparations

Targeted gene knock out using nuclease-assisted vector integration: Hemi- and Homozygous deletion of JAG1

Gapinske, M., Tague, N., Winter, J., Underhill, G. H. & Perez Pinera, P., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 233-248 16 p. (Methods in Molecular Biology; vol. 1772).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Knockout Techniques
Genome
Technology
Biotechnology
DNA

The Biochemistry and Structural Biology of Cyanobactin Pathways: Enabling Combinatorial Biosynthesis

Gu, W., Dong, S. H., Sarkar, S., Nair, S. K. & Schmidt, E. W., Jan 1 2018, Marine Enzymes and Specialized Metabolism - Part A. Academic Press Inc., p. 113-163 51 p. (Methods in Enzymology; vol. 604).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemistry
Biosynthesis
Enzymes
Dimethylallyltranstransferase
Methyltransferases

The Enzymology of Prochlorosin Biosynthesis

Bobeica, S. C. & van der Donk, W. A., Jan 1 2018, Methods in Enzymology. Moore, B. S. (ed.). Academic Press Inc., p. 165-203 39 p. (Methods in Enzymology; vol. 604).

Research output: Chapter in Book/Report/Conference proceedingChapter

Prochlorococcus
Biosynthesis
Genes
Genome
Synechococcus
2017

A critical evaluation of the Neo-Socioanalytic Model of personality

Roberts, B. W. & Nickel, L. B., Apr 14 2017, Personality Development Across the Lifespan. Elsevier Inc., p. 157-177 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Personality Development
Personality

African American mothers' parenting in the midst of violence and fear: Finding meaning and transcendence

Mendenhall, R., Henderson, L. & Scott, B. M., Jan 1 2017, Black Women's Mental Health: Balancing Strength and Vulnerability. State University of New York Press, p. 183-197 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

transcendence
Parenting
Violence
African Americans
Fear

Agricultural use of antibiotics and antibiotic resistance

Koike, S., Mackie, R. I. & Aminov, R., Jan 1 2017, Antibiotic Resistance Genes in Natural Environments and Long-Term Effects. Nova Science Publishers, Inc., p. 217-250 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microbial Drug Resistance
Anti-Bacterial Agents
Horizontal Gene Transfer
Ecology
Agriculture

Biosensing based on surface-enhanced raman spectroscopy

Liu, G. L., Zheng, W., Zhang, P. & Chen, F., Jan 1 2017, Biosensors Based on Nanomaterials and Nanodevices. CRC Press, p. 111-155 45 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Raman Spectrum Analysis
Raman spectroscopy
drugs
Enzymes
Cell signaling

Cancer Patients

Fan, T. M., Apr 28 2017, Veterinary Anesthesia and Analgesia: The Fifth Edition of Lumb and Jones. Wiley, p. 993-1003 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

pain
neoplasms
Nociceptive Pain
bones
Pets

Dynamic measures of flagellar gene expression

Koirala, S. & Rao, C. V., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 73-83 11 p. (Methods in Molecular Biology; vol. 1593).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Expression
Flagella
Genes
Salmonella enterica
Food

Enhanced Learning through Multimodal Training: Evidence from a Comprehensive Cognitive, Physical Fitness, and Neuroscience Intervention

Ward, N., Paul, E., Watson, P., Cooke, G. E., Hillman, C. H., Cohen, N. J., Kramer, A. F. & Barbey, A. K., Dec 1 2017, Scientific Reports. Nature Publishing Group, (Scientific Reports; vol. 7).

Research output: Chapter in Book/Report/Conference proceedingChapter

Physical Fitness
Neurosciences
Learning
Exercise
Cognition

Female Reproductive C: Uterine Tumors and the Environment

Nowak, R. A., Bi, J. J., Koohestani, F., Mesquita, F. S. & Erbach, G. T., Dec 15 2017, Reproductive and Endocrine Toxicology. Elsevier Inc., Vol. 4-15. p. 438-469 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endocrine Disruptors
Neoplasms
Animal Models
Uterus
Incidence

Fresh Produce Treated by Power Ultrasound

Palma, S., Zhou, B. & Feng, H., Aug 10 2017, Ultrasound: Advances in Food Processing and Preservation. Elsevier Inc., p. 201-213 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sanitation
fresh produce
sanitation
Foodborne Diseases
Ultrasonics

Genetic Mouse Models for Female Reproductive Toxicology Studies

Dávila, J., Li, Q. & Bagchi, I. C., Dec 15 2017, Reproductive and Endocrine Toxicology. Elsevier Inc., Vol. 4-15. p. 470-494 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genetic Models
Toxicology
Incidence
Genetic Polymorphisms
Developed Countries

High-Resolution Optical Tweezers Combined With Single-Molecule Confocal Microscopy

Whitley, K. D., Comstock, M. J. & Chemla, Y. R., Jan 1 2017, Methods in Enzymology. Academic Press Inc., p. 137-169 33 p. (Methods in Enzymology; vol. 582).

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical Tweezers
Optical tweezers
Confocal microscopy
Confocal Microscopy
Fluorescence

High-resolution “fleezers”: Dual-trap optical tweezers combined with single-molecule fluorescence detection

Whitley, K. D., Comstock, M. J. & Chemla, Y. R., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 183-256 74 p. (Methods in Molecular Biology; vol. 1486).

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical Tweezers
Fluorescence
Macromolecular Substances

In vivo biodetection using surface-enhanced raman spectroscopy

Lee, S., Kadam, U. S., Craig, A. P. & Irudayaraj, J. M. K., Jan 1 2017, Biosensors Based on Nanomaterials and Nanodevices. CRC Press, p. 157-178 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Raman Spectrum Analysis
Nanostructures
Raman spectroscopy
Electromagnetic Fields
Refractometry

Optical microscopy and spectroscopy for epigenetic modifications in single living cells

Cui, Y. & Irudayaraj, J. M. K., Jan 1 2017, Methods in Pharmacology and Toxicology. Humana Press Inc., p. 135-154 20 p. (Methods in Pharmacology and Toxicology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Epigenomics
Microscopy
Spectrum Analysis
Optical Imaging
Physiological Phenomena

Organizing for innovation: Do TLO characteristics correlate with technology transfer outcomes?

Goble, L., Bercovitz, J. E. L. & Feldman, M., Feb 1 2017, Volume 4: Process Approach to Academic Entrepreneurship: Evidence from the Globe. World Scientific Publishing Co. Pte Ltd, Vol. 4-4. p. 105-135 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Organizing
Technology transfer
Innovation
Technology licensing
Correlates

Pancreatic Surgery

Phillips, H., May 6 2017, Complications in Small Animal Surgery. Wiley Blackwell, p. 446-460 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

intestinal obstruction
islets of Langerhans
abscess
Islets of Langerhans
pancreas

Qflow cytometry-based receptoromic screening: A high-throughput quantification approach informing biomarker selection and nanosensor development

Chen, S., Weddell, J., Gupta, P., Conard, G., Parkin, J. & Imoukhuede, P. U. II., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 117-138 22 p. (Methods in Molecular Biology; vol. 1570).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomarkers
Immunohistochemistry
Calibration
Vascular Endothelial Growth Factor Receptor
Antibody Specificity

Strain development by whole-cell directed evolution

Si, T., Lian, J. & Zhao, H., Jan 1 2017, Directed Enzyme Evolution: Advances and Applications. Springer International Publishing, p. 173-200 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phenotype
Workflow
Screening
Mutation

Subsistence marketplaces at the confluence of culture, poverty, and low literacy: Materially poor but relationally rich?

Viswanathan, M., Jan 1 2017, Cross Cultural Issues in Consumer Science and Consumer Psychology: Current Perspectives and Future Directions. Springer International Publishing, p. 149-168 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Poverty
Negotiating
Rural Population
Literacy
Thinking

The compressed vocabulary of the proteins of archaea

Caetano-Anolles, G., Minhas, B. F., Aziz, F., Mughal, F., Shahzad, K., Tal, G., Mittenthal, J. E., Caetano-Anollés, D., Koç, I., Nasir, A., Caetano-Anollés, K. & Kim, K. M., Sep 27 2017, Biocommunication of Archaea. Springer International Publishing, p. 147-174 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Vocabulary
Archaea
Proteins
proteins

Zymomonas mobilis for the conversion of lignocellulosic biomass to fuels and chemicals

Agrawal, M., Dunn, K. L. & Rao, C. V., Jan 1 2017, Engineering of Microorganisms for the Production of Chemicals and Biofuels from Renewable Resources. Springer International Publishing, p. 67-92 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Zymomonas
Metabolic engineering
Metabolic Engineering
Biofuels
Biomass

“Dipstick” colorimetric detection of metal ions based on immobilization of DNAzyme and gold nanoparticles onto a lateral flow device

Mazumdar, D., Lan, T. & Lu, Y., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 389-406 18 p. (Methods in Molecular Biology; vol. 1571).

Research output: Chapter in Book/Report/Conference proceedingChapter

Catalytic DNA
Immobilization
Gold
Nanoparticles
Metals
2016

Adolescent Exposure to Amphetamines and Vulnerability to Addiction

Hankosky, E. R. & Gulley, J. M., Apr 15 2016, Stimulants, Club and Dissociative Drugs, Hallucinogens, Steroids, Inhalants and International Aspects. Elsevier Inc., Vol. 2. p. 292-299 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Amphetamines
Amphetamine-Related Disorders
Adolescent Behavior
Age Factors
Street Drugs

Biocatalysis for Drug Discovery and Development

Liang, Y., Zhang, M. M., Ang, E. L. & Zhao, H., May 13 2016, Green Biocatalysis. Wiley, p. 421-455 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Drug products
Enzymes
Pharmaceutical Preparations
Biocatalysts
Chemical reactions

Biochemical production of bioalcohols

Melikoglu, M., Singh, V., Leu, S. Y., Webb, C. & Lin, C. S. K., Jan 1 2016, Handbook of Biofuels Production: Processes and Technologies: Second Edition. Elsevier Inc., p. 237-258 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Crops
Bioethanol
Biomass
Agricultural wastes
Enzymatic hydrolysis

Combined and iterative use of computational design and directed evolution for protein-ligand binding design

Wang, M. & Zhao, H., May 1 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1414. p. 139-153 15 p. (Methods in Molecular Biology; vol. 1414).

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein Binding
Switch Genes
Ligands
Two-Hybrid System Techniques
Mutagenesis

Competition for Manganese at the Host–Pathogen Interface

Kelliher, J. L. & Kehl-Fie, T., Jan 1 2016, Host-Microbe Interactions, 2016. Elsevier B.V., Vol. 142. p. 1-25 25 p. (Progress in Molecular Biology and Translational Science; vol. 142).

Research output: Chapter in Book/Report/Conference proceedingChapter

Manganese
Metals
Starvation
Immunity
Bacteria

Design of Heteronuclear Metalloenzymes

Bhagi-Damodaran, A., Hosseinzadeh, P., Mirts, E., Reed, J., Petrik, I. D. & Lu, Y., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 501-537 37 p. (Methods in Enzymology; vol. 580).

Research output: Chapter in Book/Report/Conference proceedingChapter

Scaffolds
Metals
Proteins
Metal ions
Cytochrome-c Peroxidase

Detection of endogenous selective estrogen receptor modulators such as 27-hydroxycholesterol

Nelson, E., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 431-443 13 p. (Methods in Molecular Biology; vol. 1366).

Research output: Chapter in Book/Report/Conference proceedingChapter

Selective Estrogen Receptor Modulators
Ligands
Estrogen Receptors
Estrogens
Tamoxifen

Efficient direct mining of selective discriminative patterns for classification

Cheng, H., Han, J., Yan, X. & Yu, P. S., Apr 19 2016, Contrast Data Mining: Concepts, Algorithms, and Applications. CRC Press, p. 39-58 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter