Research Output 1973 2020

2020

Assessing the transition effects in a drinking water distribution system caused by changing supply water quality: an indirect approach by characterizing suspended solids

Chen, L., Ling, F., Bakker, G., Liu, W. T., Medema, G., van der Meer, W. & Liu, G., Jan 1 2020, In : Water Research. 168, 115159.

Research output: Contribution to journalArticle

Open Access
Water distribution systems
Potable water
Water quality
drinking water
water quality

Compact quantum dots for quantitative cytology

Le, P., Chitoor, S., Tu, C., Lim, S. J. & Smith, A. M., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 147-158 12 p. (Methods in Molecular Biology; vol. 2064).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantum Dots
Nanoparticles
Cell Biology
Click Chemistry
Fluorescent Dyes

Effects of nitrogenous substances on heat transfer fouling using model thin stillage fluids

You, J., Johnston, D. B., Dien, B. S., Singh, V., Engeseth, N. J., Tumbleson, M. E. & Rausch, K. D., Jan 2020, In : Food and Bioproducts Processing. 119, p. 125-132 8 p.

Research output: Contribution to journalArticle

fouling
Fouling
heat transfer
Peptide Hydrolases
Hot Temperature

Emerging molecular biology tools and strategies for engineering natural product biosynthesis

Xu, W., Klumbys, E., Ang, E. L. & Zhao, H., Jun 2020, In : Metabolic Engineering Communications. 10, e00108.

Research output: Contribution to journalReview article

Open Access
Molecular biology
Biosynthesis
Biological Products
Molecular Biology
Enzymes

In-situ graft-polymerization modification of commercial ultrafiltration membranes for long-term fouling resistance in a pilot-scale membrane bioreactor

Straub, A. P., Asa, E., Zhang, W., Nguyen, T. H. & Herzberg, M., Feb 15 2020, In : Chemical Engineering Journal. 382, 122865.

Research output: Contribution to journalArticle

Ultrafiltration
Fouling
ultrafiltration
Bioreactors
polymerization

Temperature rises during strain-rate dependent avalanches in bulk metallic glasses

Li, J. J., Fan, J. F., Wang, Z., Wu, Y. C., Dahmen, K. A. & Qiao, J. W., Jan 2020, In : Intermetallics. 116, 106637.

Research output: Contribution to journalArticle

Metallic glass
Strain rate
Temperature
Heating
Shear bands
2019

13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study

Jeon, S., Li, Q., Rubakhin, S., Sweedler, J. V., Smith, J. W., Neuringer, M., Kuchan, M. & Erdman, J. W., Jan 2019, In : Nutrition Research. 61, p. 102-108 7 p.

Research output: Contribution to journalArticle

Lutein
Macaca mulatta
Oral Administration
Tissue Distribution
Haplorhini

7 Log Virus Removal in a Simple Functionalized Sand Filter

Samineni, L., Xiong, B., Chowdhury, R., Pei, A., Kuehster, L., Wang, H., Dickey, R., Soto, P. E., Massenburg, L., Nguyen, T. H., Maranas, C., Velegol, D., Kumar, M. & Velegol, S., Nov 5 2019, In : Environmental Science and Technology. 53, 21, p. 12706-12714 9 p.

Research output: Contribution to journalArticle

Viruses
virus
Sand
filter
sand

AcMC 2: Accelerated Markov Chain Monte Carlo for Probabilistic Models

Banerjee, S. S., Kalbarczyk, Z. T. & Iyer, R. K., Apr 4 2019, ASPLOS 2019 - 24th International Conference on Architectural Support for Programming Languages and Operating Systems. Association for Computing Machinery, p. 515-528 14 p. (International Conference on Architectural Support for Programming Languages and Operating Systems - ASPLOS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
Markov processes
Particle accelerators
Program processors
Field programmable gate arrays (FPGA)
Application specific integrated circuits

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C. J., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access
global perspective
fossil fuel
seasonality
vegetation
carbon

A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data

Dinh, H. V., Suthers, P. F., Chan, S. H. J., Shen, Y., Xiao, T., Deewan, A., Jagtap, S. S., Zhao, H., Rao, C. V., Rabinowitz, J. D. & Maranas, C. D., Dec 2019, In : Metabolic Engineering Communications. 9, e00101.

Research output: Contribution to journalArticle

Open Access
Genomics
Genes
Yeasts
Genome
Basidiomycota

A Computationally Efficient Model for Predicting Successful Memory Encoding Using Machine-Learning-based EEG Channel Selection

Saboo, K. V., Varatharajah, Y., Berry, B. M., Sperling, M. R., Gorniak, R., Davis, K. A., Jobst, B. C., Gross, R. E., Lega, B., Sheth, S. A., Kahana, M. J., Kucewicz, M. T., Worrell, G. A. & Iyer, R. K., May 16 2019, 9th International IEEE EMBS Conference on Neural Engineering, NER 2019. IEEE Computer Society, p. 323-327 5 p. 8717057. (International IEEE/EMBS Conference on Neural Engineering, NER; vol. 2019-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electroencephalography
Learning systems
Data storage equipment
Electrodes
Set theory

A computational model of feedback-mediated hematopoietic stem cell differentiation in vitro

Mahadik, B., Hannon, B. & Harley, B. A. C., Mar 2019, In : PloS one. 14, 3, e0212502.

Research output: Contribution to journalArticle

Open Access
Hematopoietic Stem Cells
Stem cells
cell differentiation
Cell Differentiation
Feedback

A Confocal Reflection Super-Resolution Technique to Image Golgi-Cox Stained Neurons

Sivaguru, M., Khaw, Y. M. & Inoue, M., Aug 2019, In : Journal of Microscopy. 275, 2, p. 115-130 16 p.

Research output: Contribution to journalArticle

Staining and Labeling
Neurons
Light
Dendritic Spines
Central Nervous System Diseases

A continuing career in biocatalysis: Frances H. Arnold

Fasan, R., Jennifer Kan, S. B. & Zhao, H., Nov 1 2019, In : ACS Catalysis. 9, 11, p. 9775-9788 14 p.

Research output: Contribution to journalArticle

Enzymes
Biocatalysts
Catalysis
Biocatalysis
glucokinase
Glucokinase
Anthocyanins
Medical problems
phenolic acids

Activation of silent biosynthetic gene clusters using transcription factor decoys

Wang, B., Guo, F., Dong, S. H. & Zhao, H., Feb 1 2019, In : Nature chemical biology. 15, 2, p. 111-114 4 p.

Research output: Contribution to journalArticle

Multigene Family
Transcription Factors
Oxazoles
Peptide Synthases
Polyketide Synthases

Active feminization of the preoptic area occurs independently of the gonads in Amphiprion ocellaris

Dodd, L. D., Nowak, E., Lange, D., Parker, C. G., DeAngelis, R., Gonzalez, J. A. & Rhodes, J. S., Jun 2019, In : Hormones and Behavior. 112, p. 65-76 12 p.

Research output: Contribution to journalArticle

Feminization
Preoptic Area
Gonads
Steroids
Sexual Development

Adapting sequence to sequence models for text normalization in social media

Lourentzou, I., Manghnani, K. & Zhai, C., Jan 1 2019, p. 335-345. 11 p.

Research output: Contribution to conferencePaper

Processing
Speech analysis
Linguistics
Experiments

Adaptive Control using Gaussian-Process with Model Reference Generative Network

Joshi, G. & Chowdhary, G., Jan 18 2019, 2018 IEEE Conference on Decision and Control, CDC 2018. Institute of Electrical and Electronics Engineers Inc., p. 237-243 7 p. 8619431. (Proceedings of the IEEE Conference on Decision and Control; vol. 2018-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Model reference adaptive control
Model Reference Adaptive Control
Gaussian Model
Reference Model
Gaussian Process
Ciprofloxacin
Escherichia coli
antibiotic resistance
Microfluidics
experiment
Model reference adaptive control
Model predictive control
Clustering algorithms
Rocks
Uncertainty

A direct effect of the autonomic nervous system on somatic stem cell proliferation?

Davis, E. A. & Dailey, M. J., Jan 2019, In : American Journal of Physiology - Regulatory Integrative and Comparative Physiology. 316, 1, p. R1-R5

Research output: Contribution to journalArticle

Adult Stem Cells
Autonomic Nervous System
Cell Proliferation
Stem Cells
Epithelial Cells

Adolescent impulsivity as a sex-dependent and subtype-dependent predictor of impulsivity, alcohol drinking and dopamine D 2 receptor expression in adult rats

Hammerslag, L. R., Belagodu, A. P., Aladesuyi Arogundade, O. A., Karountzos, A. G., Guo, Q., Galvez, R., Roberts, B. W. & Gulley, J. M., Mar 2019, In : Addiction Biology. 24, 2, p. 193-205 13 p.

Research output: Contribution to journalArticle

Impulsive Behavior
Alcohol Drinking
Dopamine
Substance-Related Disorders
Saccharin

A dolomitization event at the oceanic chemocline during the Permian-Triassic transition

Gregg, J. M., Kaczmarek, S. E., Bish, D. L., Machel, H. G. & Fouke, B. W., Jan 1 2019, In : Geology. 47, 7, p. e467-e467

Research output: Contribution to journalComment/debate

Open Access
dolomitization
Permian
Triassic

Adopting bioenergy crops: Does farmers’ attitude toward loss matter?

Anand, M., Miao, R. & Khanna, M., Jul 2019, In : Agricultural Economics (United Kingdom). 50, 4, p. 435-450 16 p.

Research output: Contribution to journalArticle

farmers' attitudes
energy crops
Miscanthus
Panicum virgatum
farmers

Advancing point-of-care diagnostics of metabolites through engineering semisynthetic proteins

Zhang, J. J. & Lu, Y., Apr 2019, In : Clinical Chemistry. 65, 4, p. 507-509 3 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Protein Engineering
Metabolites
Proteins

Advancing the Fields of Measurement Science with Partnerships and Awards

Sweedler, J. V., Apr 2 2019, In : Analytical chemistry. 91, 7, 1 p.

Research output: Contribution to journalEditorial

A dynamic risk form of entropic value at risk

Axelrod, A. & Chowdhary, G., Jan 1 2019, AIAA Scitech 2019 Forum. American Institute of Aeronautics and Astronautics Inc, AIAA, (AIAA Scitech 2019 Forum).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A gelatin hydrogel to study endometrial angiogenesis and trophoblast invasion

Zambuto, S. G., Clancy, K. B. H. & Harley, B. A., Oct 6 2019, In : Interface Focus. 9, 5, 20190016.

Research output: Contribution to journalArticle

Hydrogel
Endothelial cells
Trophoblasts
Gelatin
Hydrogels

A gene cluster for taurine sulfur assimilation in an anaerobic human gut bacterium

Xing, M., Wei, Y., Hua, G., Li, M., Nanjaraj Urs, A. N., Wang, F., Hu, Y., Zhai, W., Liu, Y., Ang, E. L., Zhao, H. & Zhang, Y., Aug 15 2019, In : Biochemical Journal. 476, 15, p. 2271-2279 9 p.

Research output: Contribution to journalArticle

Taurine
Multigene Family
Sulfur
Bacteria
Genes

A generative model for discovering action-based roles and community role compositions on community question answering platforms

Geigle, C., Dev, H., Sundaram, H. & Zhai, C. X., Jan 1 2019, p. 181-192. 12 p.

Research output: Contribution to conferencePaper

Chemical analysis
Health
Probability distributions
Experiments

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling

Schmidt, J. E., Kent, A. D., Brisson, V. L. & Gaudin, A. C. M., Nov 7 2019, In : Microbiome. 7, 1, 146.

Research output: Contribution to journalArticle

Open Access
Rhizosphere
Nitrogen
Soil
Microbiota
Zea mays

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A., Bunikis, I., Pettersson, O. V., Mosbech, M. B., Childers, A. K., Evans, J. D., Mikheyev, A. S., Robertson, H. M., Robinson, G. E. & Webster, M. T., Apr 8 2019, In : BMC genomics. 20, 1, 275.

Research output: Contribution to journalArticle

Open Access
Bees
Chromosomes
Chromosome Mapping
Genome
Genomic Structural Variation

AliCo: A New Efficient Representation for SAM Files

Ochoa-Alvarez, I., Li, H., Baumgarte, F., Hergenrother, C., Voges, J. & Hernaez, M., May 10 2019, Proceedings - DCC 2019: 2019 Data Compression Conference. Storer, J. A., Bilgin, A., Serra-Sagrista, J. & Marcellin, M. W. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 93-102 10 p. 8712770. (Data Compression Conference Proceedings; vol. 2019-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Compressors
Genes
Information use
Throughput
Processing

Allele-specific enhancer interaction at the Peg3 imprinted domain

Kim, J., Frey, W. D., Sharma, K., Ghimire, S., Teruyama, R. & Stubbs, L., Jan 1 2019, In : PloS one. 14, 10, e0224287.

Research output: Contribution to journalArticle

Open Access
Conformations
Brain
Animals
Genes
Alleles

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy

A Mouse Mutation That Dysregulates Neighboring Galnt17 and Auts2 Genes Is Associated with Phenotypes Related to the Human AUTS2 Syndrome

Weisner, P. A., Chen, C. Y., Sun, Y., Yoo, J., Kao, W. C., Zhang, H., Baltz, E. T., Troy, J. M. & Stubbs, L., Nov 5 2019, In : G3 (Bethesda, Md.). 9, 11, p. 3891-3906 16 p.

Research output: Contribution to journalArticle

Open Access
Homozygote
Phenotype
Mutation
N-Acetylgalactosaminyltransferases
Pathology

Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., Bousquet, J., Khasa, D. & Van Damme, P., Dec 1 2019, In : Genetic Resources and Crop Evolution. 66, 8, p. 1653-1669 17 p.

Research output: Contribution to journalArticle

Sapindaceae
Litchi
Litchi chinensis
Vietnam
Microsatellite Repeats

Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador

Zurita, M. F., Cárdenas, P. A., Sandoval, M. E., Peña, M. C., Fornasini, M., Flores, N., Monaco, M. H., Berding, K., Donovan, S. M., Kuntz, T., Gilbert, J. A. & Baldeón, M. E., Jan 1 2019, (Accepted/In press) In : Gut Microbes.

Research output: Contribution to journalArticle

Ecuador
Nutritional Status
Case-Control Studies
Ruminococcus
Bacteroides

Analysis of high Mg-incorporation into GaN via PAMBE modulation doping and molecular dynamics simulations

Ismail, F. H., Landi, M., Kelly, F. P. & Kim, K., Jan 1 2019.

Research output: Contribution to conferencePaper

Molecular dynamics
Doping (additives)
Modulation
Computer simulation
Secondary ion mass spectrometry

Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer

Woodburn, E. V., Long, K. D. & Cunningham, B. T., Jan 15 2019, In : IEEE Sensors Journal. 19, 2, p. 508-514 7 p., 8494768.

Research output: Contribution to journalArticle

Smartphones
Spectrometers
Assays
strip
Cameras

Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S. & Schroeder, H., May 2019, In : Journal of Archaeological Science. 105, p. 11-18 8 p.

Research output: Contribution to journalArticle

genetic test
slave
nicotine
artifact
nineteenth century

Ancient DNA reveals a multistep spread of the first herders into sub-Saharan Africa

Prendergast, M. E., Lipson, M., Sawchuk, E. A., Olalde, I., Ogola, C. A., Rohland, N., Sirak, K. A., Adamski, N., Bernardos, R., Broomandkhoshbacht, N., Callan, K., Culleton, B. J., Eccles, L., Harper, T. K., Lawson, A. M., Mah, M., Oppenheimer, J., Stewardson, K., Zalzala, F., Ambrose, S. H. & 13 others, Ayodo, G., Gates, H. L., Gidna, A. O., Katongo, M., Kwekason, A., Mabulla, A. Z. P., Mudenda, G. S., Ndiema, E. K., Nelson, C., Robertshaw, P., Kennett, D. J., Manthi, F. K. & Reich, D., Jul 5 2019, In : Science. 365, 6448, eaaw6275.

Research output: Contribution to journalArticle

Iron Age
DNA
Stone Age
food production
genetic differentiation

An evaluation of primers for detecting denitrifiers via their functional genes

Ma, Y., Zilles, J. & Kent, A. D., Apr 2019, In : Environmental Microbiology. 21, 4, p. 1196-1210 15 p.

Research output: Contribution to journalArticle

Denitrification
denitrification
Ecology
functional group
gene

An Exploratory Look at the Role of Childcare Providers as a Support and Resource for Breastfeeding Mothers

Lundquist, A., McBride, B. A., Donovan, S. M. & Kieffer, A., Jun 2019, In : Breastfeeding Medicine. 14, 5, p. 313-319 7 p.

Research output: Contribution to journalArticle

Breast Feeding
Mothers
Education
Foster Home Care
Mental Competency

An extended bacterial reductive pyrimidine degradation pathway that enables nitrogen release from β-alanine

Yin, J., Wei, Y., Liu, D., Hu, Y., Lu, Q., Lui Ang, E., Zhao, H. & Zhang, Y., Jan 1 2019, In : Journal of Biological Chemistry. 294, 43, p. 15662-15671 10 p.

Research output: Contribution to journalArticle

Alanine
Nitrogen
Degradation
Bacteria
Uracil

An extended regulatory landscape drives Tbx18 activity in a variety of prostate-associated cell lineages

Negi, S., Bolt, C. C., Zhang, H. & Stubbs, L. J., Feb 15 2019, In : Developmental Biology. 446, 2, p. 180-192 13 p.

Research output: Contribution to journalArticle

Cell Lineage
Chromatin
Prostate
Essential Genes
Ureter

An extra copy of the β-glucosidase gene improved the cellobiose fermentation capability of an engineered Saccharomyces cerevisiae strain

Kim, H. J., Lee, W. H., Turner, T. L., Kwak, S. & Jin, Y. S., Oct 1 2019, In : 3 Biotech. 9, 10, 367.

Research output: Contribution to journalArticle

Glucosidases
Cellobiose
cellobiose
glucosidases
Fermentation

An interview with Professor Virendra B. Mahesh

Nowak, R. A., Feb 1 2019, In : Biology of reproduction. 100, 2, p. 301-304 4 p.

Research output: Contribution to journalComment/debate

Open Access
Interviews