Research Output 1967 2019

2019

AcMC 2: Accelerated Markov Chain Monte Carlo for Probabilistic Models

Banerjee, S. S., Kalbarczyk, Z. T. & Iyer, R. K., Apr 4 2019, ASPLOS 2019 - 24th International Conference on Architectural Support for Programming Languages and Operating Systems. Association for Computing Machinery, p. 515-528 14 p. (International Conference on Architectural Support for Programming Languages and Operating Systems - ASPLOS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
Markov processes
Particle accelerators
Program processors
Field programmable gate arrays (FPGA)
Application specific integrated circuits

Active feminization of the preoptic area occurs independently of the gonads in Amphiprion ocellaris

Dodd, L. D., Nowak, E., Lange, D., Parker, C. G., DeAngelis, R., Gonzalez, J. A. & Rhodes, J. S., Jun 1 2019, In : Hormones and Behavior. 112, p. 65-76 12 p.

Research output: Contribution to journalArticle

Feminization
Preoptic Area
Gonads
Steroids
Sexual Development

Adaptive Control using Gaussian-Process with Model Reference Generative Network

Joshi, G. & Chowdhary, G., Jan 18 2019, 2018 IEEE Conference on Decision and Control, CDC 2018. Institute of Electrical and Electronics Engineers Inc., p. 237-243 7 p. 8619431. (Proceedings of the IEEE Conference on Decision and Control; vol. 2018-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Model reference adaptive control
Model Reference Adaptive Control
Gaussian Model
Reference Model
Gaussian Process

A direct effect of the autonomic nervous system on somatic stem cell proliferation?

Davis, E. A. & Dailey, M. J., Jan 1 2019, In : American Journal of Physiology - Regulatory Integrative and Comparative Physiology. 316, 1, p. R1-R5

Research output: Contribution to journalArticle

Adult Stem Cells
Autonomic Nervous System
Cell Proliferation
Stem Cells
Epithelial Cells

Adolescent impulsivity as a sex-dependent and subtype-dependent predictor of impulsivity, alcohol drinking and dopamine D 2 receptor expression in adult rats

Hammerslag, L. R., Belagodu, A. P., Aladesuyi Arogundade, O. A., Karountzos, A. G., Guo, Q., Galvez, R., Roberts, B. W. & Gulley, J. M., Mar 1 2019, In : Addiction Biology. 24, 2, p. 193-205 13 p.

Research output: Contribution to journalArticle

Impulsive Behavior
Alcohol Drinking
Dopamine
Substance-Related Disorders
Saccharin

Advancing point-of-care diagnostics of metabolites through engineering semisynthetic proteins

Zhang, J. J. & Lu, Y., Apr 1 2019, In : Clinical Chemistry. 65, 4, p. 507-509 3 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Protein Engineering
Metabolites
Proteins

Advancing the Fields of Measurement Science with Partnerships and Awards

Sweedler, J. V., Apr 2 2019, In : Analytical chemistry. 91, 7, 1 p.

Research output: Contribution to journalEditorial

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Wallberg, A., Bunikis, I., Pettersson, O. V., Mosbech, M. B., Childers, A. K., Evans, J. D., Mikheyev, A. S., Robertson, H. M., Robinson, G. E. & Webster, M. T., Apr 8 2019, In : BMC genomics. 20, 1, 275.

Research output: Contribution to journalArticle

Open Access
Bees
Chromosomes
Chromosome Mapping
Genome
Genomic Structural Variation

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy

Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer

Woodburn, E. V., Long, K. D. & Cunningham, B. T., Jan 15 2019, In : IEEE Sensors Journal. 19, 2, p. 508-514 7 p., 8494768.

Research output: Contribution to journalArticle

Smartphones
Spectrometers
Assays
strip
Cameras

Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S. & Schroeder, H., May 1 2019, In : Journal of Archaeological Science. 105, p. 11-18 8 p.

Research output: Contribution to journalArticle

genetic test
slave
nicotine
artifact
nineteenth century

An extended regulatory landscape drives Tbx18 activity in a variety of prostate-associated cell lineages

Negi, S., Bolt, C. C., Zhang, H. & Stubbs, L. J., Feb 15 2019, In : Developmental Biology. 446, 2, p. 180-192 13 p.

Research output: Contribution to journalArticle

Cell Lineage
Chromatin
Prostate
Essential Genes
Ureter

Antarctic blackfin icefish genome reveals adaptations to extreme environments

Kim, B. M., Amores, A., Kang, S., Ahn, D. H., Kim, J. H., Kim, I. C., Lee, J. H., Lee, S. G., Lee, H., Lee, J., Kim, H. W., Desvignes, T., Batzel, P., Sydes, J., Titus, T., Wilson, C. A., Catchen, J. M., Warren, W. C., Schartl, M., Detrich, H. W. & 2 othersPostlethwait, J. H. & Park, H., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 469-478 10 p.

Research output: Contribution to journalArticle

genome
gene
genes
ice damage
biological rhythm

Applications of a class of Herglotz operator pencils

Barreiro, A. K., Bronski, J. C. & Rapti, Z., Jan 1 2019, In : SIAM Journal on Mathematical Analysis. 51, 1, p. 256-275 20 p.

Research output: Contribution to journalArticle

Operator Pencil
Eigenvalue
Eigenvalues and eigenfunctions
Oscillation
Accumulation point

Asian international student and asian American student: Mistaken identity and racial microaggressions

Yeo, H. J. T., Mendenhall, R., Harwood, S. A. & Huntt, M. B., Jan 1 2019, In : Journal of International Students. 9, 1, p. 39-65 27 p.

Research output: Contribution to journalArticle

Open Access
student
xenophobia
experience
nationality
racism

Assessing safe food handling knowledge and practices of food service managers in Doha, Qatar

Asim, H. S., Elnemr, I., Goktepe, I., Feng, H., Park, H. K., Alzeyara, S., AlHajri, M. & Kushad, M. M., Jan 1 2019, In : Food Science and Technology International.

Research output: Contribution to journalArticle

Qatar
Food Services
food handling
Food Handling
food service

Assessing the Impact of Mindfulness and Life Stress on Maternal Well-Being

Khan, F. & Laurent, H. K., Jan 1 2019, In : Mindfulness. 10, 1, p. 26-35 10 p.

Research output: Contribution to journalArticle

Mindfulness
Psychological Stress
well-being
Mothers
anxiety

Associations among diet, the gastrointestinal microbiota, and negative emotional states in adults

Taylor, A. M., Thompson, S. V., Edwards, C. G., Musaad, S. M. A., Khan, N. A. & Holscher, H. D., Jan 1 2019, In : Nutritional Neuroscience.

Research output: Contribution to journalArticle

Diet
Mood Disorders
Depression
Anxiety
Bifidobacterium

Automated sensorless single-shot closed-loop adaptive optics microscopy with feedback from computational adaptive optics

Iyer, R. R., Liu, Y. Z. & Boppart, S. A., Apr 29 2019, In : Optics Express. 27, 9, p. 12998-13014 17 p.

Research output: Contribution to journalArticle

adaptive optics
shot
microscopy
deformable mirrors
aberration

Axial shielding of Pd(II) complexes enables perfect stereoretention in Suzuki-Miyaura cross-coupling of Csp 3 boronic acids

Lehmann, J. W., Crouch, I. T., Blair, D. J., Trobe, M., Wang, P., Li, J. & Burke, M., Dec 1 2019, In : Nature communications. 10, 1, 1263.

Research output: Contribution to journalArticle

Open Access
Boronic Acids
cross coupling
Shielding
shielding
acids

Bagging and deep learning in optimal individualized treatment rules

Mi, X., Zou, F. & Zhu, R., Jan 1 2019, In : Biometrics.

Research output: Contribution to journalArticle

Bagging
learning
Learning
Decision Rules
neural networks

Behavioral response to fiber feedingis cohort-dependent and associated with gut microbiota composition in mice

Mailing, L. J., Allen, J. M., Pence, B. D., Rytych, J., Sun, Y., Bhattacharya, T. K., Park, P., Cross, T. W. L., McCusker, R. H., Swanson, K. S., Fahey, G. C., Rhodes, J. S., Kelley, K. W., Johnson, R. W. & Woods, J. A., Feb 1 2019, In : Behavioural Brain Research. 359, p. 731-736 6 p.

Research output: Contribution to journalArticle

Cellulose
Microbiota
Learning
Bilophila
Aptitude

Biochemical and structural investigation of sulfoacetaldehyde reductase from Klebsiella oxytoca

Zhou, Y., Wei, Y., Lin, L., Xu, T., Ang, E. L., Zhao, H., Yuchi, Z. & Zhang, Y., Jan 1 2019, In : Biochemical Journal. 476, 4, p. 733-746 14 p.

Research output: Contribution to journalArticle

Klebsiella oxytoca
Oxidoreductases
Taurine
NADP
Tail

Biohybrid valveless pump-bot powered by engineered skeletal muscle

Li, Z., Seo, Y., Aydin, O., Elhebeary, M., Kamm, R. D., Kong, H. J. & Taher Saif, M. A., Jan 29 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 5, p. 1543-1548 6 p.

Research output: Contribution to journalArticle

Hydrogel
Skeletal Muscle
Muscles
Microfluidics
Muscle Contraction
Yeast
yeast
ethanol
Ethanol
maize

Biosynthesis and Chemical Applications of Thioamides

Mahanta, N., Szantai-Kis, D. M., Petersson, E. J. & Mitchell, D. A., Jan 1 2019, In : ACS chemical biology.

Research output: Contribution to journalArticle

Thioamides
Biosynthesis
Biological Products
Cytology
Peptides

Biosynthesis of the RiPP trojan horse nucleotide antibiotic microcin C is directed by the N-formyl of the peptide precursor

Dong, S. H., Kulikovsky, A., Zukher, I., Estrada, P., Dubiley, S., Severinov, K. & Nair, S. K., Jan 1 2019, In : Chemical Science. 10, 8, p. 2391-2395 5 p.

Research output: Contribution to journalArticle

Open Access
Biosynthesis
Nucleotides
Anti-Bacterial Agents
Peptides
Ubiquitin-Activating Enzymes

Black walnut alley cropping is economically competitive with row crops in the Midwest USA

Wolz, K. J. & Delucia, E. H., Jan 1 2019, In : Ecological Applications. 29, 1, e01829.

Research output: Contribution to journalArticle

alley cropping
plantation forestry
crop
discount rate
profitability

Blended Shared Control with Subgoal Adjustment

Jin, Z., Pagilla, P., Maske, H. & Chowdhary, G., Jan 16 2019, Proceedings - 2018 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2018. Institute of Electrical and Electronics Engineers Inc., p. 2724-2729 6 p. 8616461. (Proceedings - 2018 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Social Adjustment
Task Performance and Analysis
Excavators
Efficiency
Weights and Measures

Breaking tolerance with engineered class I antigen-presenting molecules

Parks, C. A., Henning, K. R., Pavelko, K. D., Hansen, M. J., Van Keulen, V. P., Reed, B. K., Stone, J. D., Schrum, A. G., Gil, D., Kranz, D. M., Bordner, A. J., Barry, M. A. & Pease, L. R., Feb 19 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 8, p. 3136-3145 10 p.

Research output: Contribution to journalArticle

Histocompatibility Antigens Class I
Peptides
T-Lymphocytes
Autoantigens
Isoantigens

Broccoli consumption affects the human gastrointestinal microbiota

Kaczmarek, J. L., Liu, X., Charron, C. S., Novotny, J. A., Jeffery, E. H., Seifried, H. E., Ross, S. A., Miller, M. J., Swanson, K. S. & Holscher, H. D., Jan 1 2019, In : Journal of Nutritional Biochemistry. 63, p. 27-34 8 p.

Research output: Contribution to journalArticle

Brassica
Glucosinolates
Vegetables
Phytochemicals
Nutrition

BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., Beck, J. L. & Whitney, S. M., Apr 1 2019, In : Plant Cell and Environment. 42, 4, p. 1287-1301 15 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
ribulose-bisphosphate carboxylase
Tobacco
tobacco
Growth

Cell-type specific polysome profiling from mammalian tissues

Seimetz, J., Arif, W., Bangru, S., Hernaez, M. & Kalsotra, A., Feb 15 2019, In : Methods. 155, p. 131-139 9 p.

Research output: Contribution to journalArticle

Polyribosomes
Tissue
Messenger RNA
Workflow
Gene Expression Regulation

CHAPTER 2: Design and Engineering of Heme Enzymes with O 2 -dependent Catalytic Activity

Cui, C., Reed, J. H., Mirts, E. N. & Lu, Y., Jan 1 2019, Dioxygen-dependent Heme Enzymes. Ikeda-Saito, M. & Raven, E. (eds.). 13 ed. Royal Society of Chemistry, p. 37-62 26 p. (RSC Metallobiology; vol. 2019-January, no. 13).

Research output: Chapter in Book/Report/Conference proceedingChapter

Heme
Catalyst activity
Enzymes
Oxidoreductases
Biological Phenomena
Microspheres
Nanoparticles
Imaging techniques
nanoparticles
magnetic resonance

Characterization of the Candida orthopsilosis agglutinin-like sequence (ALS) genes

Lombardi, L., Zoppo, M., Rizzato, C., Bottai, D., Hernandez, A. G., Hoyer, L. L. & Tavanti, A., Apr 1 2019, In : PloS one. 14, 4, e0215912.

Research output: Contribution to journalArticle

Open Access
Agglutinins
Candida
agglutinins
Genes
nucleotide sequences

Characterization of the flavin monooxygenase involved in biosynthesis of the antimalarial FR-900098

Nguyen, K., DeSieno, M. A., Bae, B., Johannes, T. W., Cobb, R. E., Zhao, H. & Nair, S. K., Jan 1 2019, In : Organic and Biomolecular Chemistry. 17, 6, p. 1506-1518 13 p.

Research output: Contribution to journalArticle

dimethylaniline monooxygenase (N-oxide forming)
Flavin-Adenine Dinucleotide
biosynthesis
Biosynthesis
Antimalarials

Characterization of the Lipid Structure and Fluidity of Lipid Membranes on Epitaxial Graphene and Their Correlation to Graphene Features

Farell, M., Wetherington, M., Shankla, M., Chae, I., Subramanian, S., Kim, S. H., Aksimentiev, A., Robinson, J. & Kumar, M., Apr 2 2019, In : Langmuir. 35, 13, p. 4726-4735 10 p.

Research output: Contribution to journalArticle

Graphite
Fluidity
Membrane Lipids
Graphene
Lipids
Open Access
roosters
processing technology
metabolizable energy
Chickens
ingredients

Cilostamide affects in a concentration and exposure time-dependent manner the viability and the kinetics of in vitro maturation of caprine and bovine oocytes

Correia, H. H. V., Vieira, L. A., Mielgo, C. M., Paes, V. M., Alves, B. G., Silva, J. R. V., Wheeler, M. B., Rodrigues, A. P. R. & Figueiredo, J. R., Feb 1 2019, In : Research in Veterinary Science. 122, p. 22-28 7 p.

Research output: Contribution to journalArticle

Oocytes
exposure duration
oocytes
goats
viability

Circadian rhythm of redox state regulates membrane excitability in hippocampal CA1 neurons

Naseri Kouzehgarani, G., Bothwell, M. Y. & Gillette, M. L., Jan 1 2019, (Accepted/In press) In : European Journal of Neuroscience.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Circadian Rhythm
Oxidation-Reduction
Neurons
Membranes

Clostridium scindens ATCC 35704: Integration of nutritional requirements, the complete genome sequence, and global transcriptional responses to bile acids

Devendran, S., Shrestha, R., Alves, J. M. P., Wolf, P. G., Ly, L., Hernandez, A. G., Méndez-García, C., Inboden, A., Wiley, J., Paul, O., Allen, A., Springer, E., Wright, C. L., Fields, C. J., Daniel, S. L. & Ridlon, J. M., Apr 1 2019, In : Applied and environmental microbiology. 85, 7, e00052-19.

Research output: Contribution to journalArticle

Clostridium scindens
nutritional requirement
Nutritional Requirements
Clostridium
bile acids

Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications

Sigdel, D., Kyi, V., Zhang, A., Setty, S. P., Liem, D. A., Shi, Y., Wang, X., Shen, J., Wang, W., Han, J. & Ping, P., Feb 23 2019, In : Journal of visualized experiments : JoVE. 144

Research output: Contribution to journalArticle

Open Access
Semantics
Publications
Processing
Data Mining
Cloud computing
Carbon Monoxide
Glycerol
Electrolysis
Carbon
Electricity

Combined Targeting of Estrogen Receptor Alpha and XPO1 Prevent Akt Activation, Remodel Metabolic Pathways and Induce Autophagy to Overcome Tamoxifen Resistance

Kulkoyluoglu-cotul, E., Smith, B. P., Wrobel, K., Zhao, Y. C., Chen, K. L. A., Hieronymi, K., Imir, O. B., Duong, K., O'callaghan, C., Mehta, A., Sahoo, S., Haley, B., Chang, H., Landesman, Y. & Madak-erdogan, Z., Apr 4 2019, In : Cancers. 11, 4, p. 479

Research output: Contribution to journalArticle

Open Access
Estrogen Receptor alpha
Autophagy
Tamoxifen
Metabolic Networks and Pathways
Neoplasms

Comparative analysis of brain and fat body gene splicing patterns in the honey bee, Apis mellifera

Kannan, K., Shook, M., Li, Y., Robinson, G. E. & Ma, J., Jan 1 2019, In : G3: Genes, Genomes, Genetics. 9, 4, p. 1055-1063 9 p.

Research output: Contribution to journalArticle

Open Access
Fat Body
Honey
Bees
Alternative Splicing
Brain

Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Wang, Y., Hua, X., Xu, J., Chen, Z., Fan, T., Zeng, Z., Wang, H., Hour, A. L., Yu, Q., Ming, R. R. & Zhang, J., Jan 24 2019, In : BMC genomics. 20, 1, 5437.

Research output: Contribution to journalArticle

Saccharum
Genomics
Magnesium
Genes
Mya

Comparative global metabolite profiling of xylose-fermenting Saccharomyces cerevisiae SR8 and Scheffersomyces stipitis

Shin, M., Kim, J. W., Ye, S., Kim, S., Jeong, D., Lee, D. Y., Kim, J. N., Jin, Y-S., Kim, K. H. & Kim, S. R., Jan 1 2019, In : Applied Microbiology and Biotechnology.

Research output: Contribution to journalArticle

Xylose
Saccharomyces cerevisiae
Ethanol
Fermentation
Xylulose

Congenital cleft sternum with diaphragmatic hernia and radial hemimelia in a kitten

Weber, L. A. & Phillips, H., Feb 1 2019, In : Veterinary Record Case Reports. 7, 1, e000472.

Research output: Contribution to journalArticle

Ectromelia
sternum
Sternum
Diaphragmatic Hernia
hernia
Phylogeny
Joining
Scalability
Large Data Sets
Polynomials