Research Output

2020

Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy

Misra, C., Bangru, S., Lin, F., Lam, K., Koenig, S. N., Lubbers, E. R., Hedhli, J., Murphy, N. P., Parker, D. J., Dobrucki, L. W., Cooper, T. A., Tajkhorshid, E., Mohler, P. J. & Kalsotra, A., Mar 23 2020, In : Developmental cell. 52, 6, p. 748-763.e6

Research output: Contribution to journalArticle

A bifunctional salvage pathway for two distinct S-adenosylmethionine by-products that is widespread in bacteria, including pathogenic Escherichia coli

North, J. A., Wildenthal, J. A., Erb, T. J., Evans, B. S., Byerly, K. M., Gerlt, J. A. & Tabita, F. R., May 1 2020, In : Molecular Microbiology. 113, 5, p. 923-937 15 p.

Research output: Contribution to journalArticle

Acidification in corn monocultures favor fungi, ammonia oxidizing bacteria, and nirK-denitrifier groups

Behnke, G. D., Zabaloy, M. C., Riggins, C. W., Rodríguez-Zas, S., Huang, L. & Villamil, M. B., Jun 10 2020, In : Science of the Total Environment. 720, 137514.

Research output: Contribution to journalArticle

Open Access

A computational framework to explore large-scale biosynthetic diversity

Navarro-Muñoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez-Guerra, A., Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., Jan 1 2020, In : Nature chemical biology. 16, 1, p. 60-68 9 p.

Research output: Contribution to journalArticle

A Computational Statistics Approach to Evaluate Blood Biomarkers for Breast Cancer Risk Stratification

Oktay, K., Santaliz-Casiano, A., Patel, M., Marino, N., Storniolo, A. M. V., Torun, H., Acar, B. & Madak Erdogan, Z., Feb 1 2020, In : Hormones and Cancer. 11, 1, p. 17-33 17 p.

Research output: Contribution to journalArticle

A Computer Conquers Tactical Combinations

Blair, D. J. & Burke, M. D., Jan 9 2020, In : Chem. 6, 1, p. 12-13 2 p.

Research output: Contribution to journalArticle

Acute exposure to physiological doses of triiodothyronine does not induce gonadal caspase 3 activity in goldfish in vitro

Allan, E. R. O., Dores, C. B., Nelson, E. R. & Habibi, H. R., Apr 1 2020, In : General and Comparative Endocrinology. 289, 113382.

Research output: Contribution to journalArticle

Acute PFOA exposure promotes epigenomic alterations in mouse kidney tissues

Rashid, F., Ramakrishnan, A., Fields, C. & Irudayaraj, J., 2020, In : Toxicology Reports. 7, p. 125-132 8 p.

Research output: Contribution to journalArticle

Open Access

A diallel analysis of a maize donor population response to in vivo maternal haploid induction: II. Haploid male fertility

De La Fuente, G. N., Frei, U. K., Trampe, B., Ren, J., Bohn, M., Yana, N., Verzegnazzi, A., Murray, S. C. & Lübberstedt, T., Mar 1 2020, In : Crop Science. 60, 2, p. 873-882 10 p.

Research output: Contribution to journalArticle

A generic arboviral model framework for exploring trade-offs between vector control and environmental concerns

Suarez, G. P., Udiani, O., Allan, B. F., Price, C., Ryan, S. J., Lofgren, E., Coman, A., Stone, C. M., Gallos, L. K. & Fefferman, N. H., Apr 7 2020, In : Journal of Theoretical Biology. 490, 110161.

Research output: Contribution to journalArticle

A genetic toolbox for metabolic engineering of Issatchenkia orientalis

Cao, M., Fatma, Z., Song, X., Hsieh, P. H., Tran, V. G., Lyon, W. L., Sayadi, M., Shao, Z., Yoshikuni, Y. & Zhao, H., May 2020, In : Metabolic Engineering. 59, p. 87-97 11 p.

Research output: Contribution to journalArticle

Agricultural robotics research applicable to poultry production: A review

Ren, G., Lin, T., Ying, Y., Chowdhary, G. & Ting, K. C., Feb 2020, In : Computers and Electronics in Agriculture. 169, 105216.

Research output: Contribution to journalReview article

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access

Altered Hippocampal Epigenetic Regulation Underlying Reduced Cognitive Development in Response to Early Life Environmental Insults

Schachtschneider, K. M., Welge, M. E., Auvil, L., Chaki, S., Rund, L. A., Madsen, O., Elmore, M. R. P., Johnson, R. W., Groenen, M. A. M. & Schook, L. B., Feb 4 2020, In : Genes. 11, 2, 162.

Research output: Contribution to journalArticle

Open Access

A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids

Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J. V. & Zhao, H., Jul 1 2020, In : Biotechnology and bioengineering. 117, 7, p. 2131-2138 8 p.

Research output: Contribution to journalArticle

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access

Analysis of recent interception records reveals frequent transport of arboreal ants and potential predictors for ant invasion in taiwan

Lee, C. C., Weng, Y. M., Lai, L. C., Suarez, A. V., Wu, W. J., Lin, C. C. & Yang, C. C. S., Jun 2020, In : Insects. 11, 6, p. 1-13 13 p., 356.

Research output: Contribution to journalArticle

Open Access

An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity

Athukoralage, J. S., McMahon, S. A., Zhang, C., Grüschow, S., Graham, S., Krupovic, M., Whitaker, R. J., Gloster, T. M. & White, M. F., Jan 23 2020, In : Nature. 577, 7791, p. 572-575 4 p.

Research output: Contribution to journalArticle

An automated aquatic rack system for rearing marine invertebrates

Henry, J. Q., Lesoway, M. P. & Perry, K. J., May 4 2020, In : BMC biology. 18, 1, 46.

Research output: Contribution to journalArticle

Open Access

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

Loog, L., Thalmann, O., Sinding, M. H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E. L., Fedorov, S., Gasparyan, B., Kandel, A. W. & 16 others, Lázničková-Galetová, M., Napierala, H., Uerpmann, H. P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K. H., Malhi, R. S., Willerslev, E., Hansen, A. J., Dobney, K., Gilbert, M. T. P., Krause, J., Larson, G., Eriksson, A. & Manica, A., May 1 2020, In : Molecular ecology. 29, 9, p. 1596-1610 15 p.

Research output: Contribution to journalArticle

Open Access

A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator

Sun, H., Zhao, H. & Ang, E. L., Apr 17 2020, In : ACS synthetic biology. 9, 4, p. 698-705 8 p.

Research output: Contribution to journalArticle

An in-silico human cell model reveals the influence of spatial organization on RNA splicing

Ghaemi, Z., Peterson, J. R., Gruebele, M. & Luthey-Schulten, Z., Mar 25 2020, In : PLoS computational biology. 16, 3, e1007717.

Research output: Contribution to journalArticle

Open Access

Anisotropic mineralized collagen scaffolds accelerate osteogenic response in a glycosaminoglycan-dependent fashion

Dewey, M. J., Nosatov, A. V., Subedi, K. & Harley, B., Apr 21 2020, In : RSC Advances. 10, 26, p. 15629-15641 13 p.

Research output: Contribution to journalArticle

Open Access

Antioxidant Therapies in Traumatic Brain Injury

Pietro, V. D., Yakoub, K. M., Caruso, G., Lazzarino, G., Signoretti, S., Barbey, A. K., Tavazzi, B., Lazzarino, G., Belli, A. & Amorini, A. M., Mar 22 2020, In : Antioxidants. 9, 3, 260.

Research output: Contribution to journalReview article

Open Access

A Pathway for Degradation of Uracil to Acetyl Coenzyme A in Bacillus megaterium

Zhu, D., Wei, Y., Yin, J., Liu, D., Ang, E. L., Zhao, H. & Zhang, Y., Mar 18 2020, In : Applied and environmental microbiology. 86, 7

Research output: Contribution to journalArticle

A photo-regulated aptamer sensor for spatiotemporally controlled monitoring of ATP in the mitochondria of living cells

Hong, S., Zhang, X., Lake, R. J., Pawel, G. T., Guo, Z., Pei, R. & Lu, Y., Jan 1 2020, In : Chemical Science. 11, 3, p. 713-720 8 p.

Research output: Contribution to journalArticle

Open Access

A prospective cohort analysis of gut microbial co-metabolism in Alaska Native and rural African people at high and low risk of colorectal cancer

Ocvirk, S., Wilson, A. S., Posma, J. M., Li, J. V., Koller, K. R., Day, G. M., Flanagan, C. A., Otto, J. E., Sacco, P. E., Sacco, F. D., Sapp, F. R., Wilson, A. S., Newton, K., Brouard, F., Delany, J. P., Behnning, M., Appolonia, C. N., Soni, D., Bhatti, F., Methé, B. & 7 others, Fitch, A., Morris, A., Gaskins, H. R., Kinross, J., Nicholson, J. K., Thomas, T. K. & O'Keefe, S. J. D., Feb 1 2020, In : American Journal of Clinical Nutrition. 111, 2, p. 406-419 14 p.

Research output: Contribution to journalArticle

A review of dietary and microbial connections to depression, anxiety, and stress

Taylor, A. M. & Holscher, H. D., Mar 3 2020, In : Nutritional Neuroscience. 23, 3, p. 237-250 14 p.

Research output: Contribution to journalReview article

Artificial water channels enable fast and selective water permeation through water-wire networks

Song, W., Joshi, H., Chowdhury, R., Najem, J. S., Shen, Y. X., Lang, C., Henderson, C. B., Tu, Y. M., Farell, M., Pitz, M. E., Maranas, C. D., Cremer, P. S., Hickey, R. J., Sarles, S. A., Hou, J. L., Aksimentiev, A. & Kumar, M., Jan 1 2020, In : Nature Nanotechnology. 15, 1, p. 73-79 7 p.

Research output: Contribution to journalArticle

A seasonal shift in offspring sex ratio of the brood parasitic Brown‐headed Cowbird (Molothrus ater)

Louder, M. I. M., Schelsky, W. M., Hoover, J. P., Louder, A. N. A. & Hauber, M. E., Jun 2 2020, (Accepted/In press) In : Journal of Avian Biology.

Research output: Contribution to journalArticle

Assessing the severity of psoriasis through multivariate analysis of optical images from non-lesional skin

Žurauskas, M., Barkalifa, R., Alex, A., Marjanovic, M., Spillman, D. R., Mukherjee, P., Neitzel, C. D., Lee, W., Medler, J., Arp, Z., Cleveland, M., Hood, S. & Boppart, S. A., Dec 1 2020, In : Scientific reports. 10, 1, 9154.

Research output: Contribution to journalArticle

Open Access

Assessing the transition effects in a drinking water distribution system caused by changing supply water quality: an indirect approach by characterizing suspended solids

Chen, L., Ling, F., Bakker, G., Liu, W. T., Medema, G., van der Meer, W. & Liu, G., Jan 1 2020, In : Water Research. 168, 115159.

Research output: Contribution to journalArticle

Open Access

Assessment of microbial diversity associated with CH4 emission from sugarcane vinasse storage and transportation systems

Oliveira, B. G., Mendes, L. W., Smyth, E. M., Tsai, S. M., Feigl, B. J. & Mackie, R. I., Sep 1 2020, In : Journal of Environmental Management. 269, 110748.

Research output: Contribution to journalArticle

Assessment of microbial risks by characterization of Escherichia coli presence to analyze the public health risks from poor water quality in Nepal

Uprety, S., Dangol, B., Nakarmi, P., Dhakal, I., Sherchan, S. P., Shisler, J. L., Jutla, A., Amarasiri, M., Sano, D. & Nguyen, T. H., May 2020, In : International Journal of Hygiene and Environmental Health. 226, 113484.

Research output: Contribution to journalArticle

Assessment of peritoneal microbial features and tumor marker levels as potential diagnostic tools for ovarian cancer

Miao, R., Badger, T. C., Groesch, K., Diaz-Sylvester, P. L., Wilson, T., Ghareeb, A., Martin, J. A., Cregger, M., Welge, M., Bushell, C., Auvil, L., Zhu, R., Brard, L. & Braundmeier-Fleming, A., Jan 1 2020, In : PloS one. 15, 1, e0227707.

Research output: Contribution to journalArticle

Open Access

A Staphylococcus pro-apoptotic peptide induces acute exacerbation of pulmonary fibrosis

D’alessandro-gabazza, C. N., Kobayashi, T., Yasuma, T., Toda, M., Kim, H., Fujimoto, H., Hataji, O., Takeshita, A., Nishihama, K., Okano, T., Okano, Y., Nishii, Y., Tomaru, A., Fujiwara, K., D’alessandro, V. F., Abdel-hamid, A. M., Ren, Y., Pereira, G. V., Wright, C. L., Hernandez, A. & 15 others, Fields, C. J., Yau, P. M., Wang, S., Mizoguchi, A., Fukumura, M., Ohtsuka, J., Nosaka, T., Kataoka, K., Kondoh, Y., Wu, J., Kawagishi, H., Yano, Y., Mackie, R. I., Cann, I. & Gabazza, E. C., Mar 24 2020, In : Nature Communications. 11, 1, 1539.

Research output: Contribution to journalArticle

Open Access

A study on practical objectives and constraints for heat conduction topology optimization

Lohan, D. J., Dede, E. M. & Allison, J. T., Feb 1 2020, In : Structural and Multidisciplinary Optimization. 61, 2, p. 475-489 15 p.

Research output: Contribution to journalArticle

Avian diet and foraging ecology constrain foreign egg recognition and rejection

Luro, A. B. & Hauber, M. E., May 1 2020, In : Avian Biology Research. 13, 1-2, p. 24-31 8 p.

Research output: Contribution to journalArticle

A wish list for synthetic biology in photosynthesis research

Zhu, X. G., Ort, D. R., Parry, M. A. J. & Von Caemmerer, S., Apr 6 2020, In : Journal of experimental botany. 71, 7, p. 2219-2225 7 p.

Research output: Contribution to journalArticle

Open Access

Axiomatic thinking for information retrieval: introduction to special issue

Amigó, E., Fang, H., Mizzaro, S. & Zhai, C., Jun 1 2020, In : Information Retrieval Journal. 23, 3, p. 187-190 4 p.

Research output: Contribution to journalEditorial

Open Access

Bacterial enrichment in highly-selective acetate-fed bioreactors and its application in rapid biofilm formation

Sun, H., Mei, R., Zhang, X. X., Ren, H., Liu, W. T. & Ye, L., Mar 1 2020, In : Water Research. 170, 115359.

Research output: Contribution to journalArticle

Bacterial Origin and Reductive Evolution of the CPR Group

Bokhari, R. H., Amirjan, N., Jeong, H., Kim, K. M., Caetano-Anollés, G. & Nasir, A., Mar 1 2020, In : Genome biology and evolution. 12, 3, p. 103-121 19 p.

Research output: Contribution to journalArticle

Open Access

Bacterial steroid-17,20-desmolase is a taxonomically rare enzymatic pathway that converts prednisone to 1,4-androstanediene-3,11,17-trione, a metabolite that causes proliferation of prostate cancer cells

Ly, L. K., Rowles, J. L., Paul, H. M., Alves, J. M. P., Yemm, C., Wolf, P. M., Devendran, S., Hudson, M. E., Morris, D. J., Erdman, J. W. & Ridlon, J. M., May 2020, In : Journal of Steroid Biochemistry and Molecular Biology. 199, 105567.

Research output: Contribution to journalArticle

Bacteroidetes can be a rich source of novel lanthipeptides: The case study of Pedobacter lusitanus

Caetano, T., van der Donk, W. & Mendo, S., May 2020, In : Microbiological Research. 235, 126441.

Research output: Contribution to journalArticle

Becoming More Conscientious or More Open to Experience? Effects of a Two-Week Smartphone-Based Intervention for Personality Change

Stieger, M., Wepfer, S., Rüegger, D., Kowatsch, T., Roberts, B. W. & Allemand, M., Jan 1 2020, (Accepted/In press) In : European Journal of Personality.

Research output: Contribution to journalArticle

Beneficial bacterial volatile compounds for the control of root-knot nematode and bacterial leaf blight on rice

Bui, H. X., Hadi, B. A. R., Oliva, R. & Schroeder, N. E., Jan 1 2020, (Accepted/In press) In : Crop Protection. 104792.

Research output: Contribution to journalArticle

Beyond an ecological ideal gas law

O’Dwyer, J. P., Jan 1 2020, In : Nature Ecology and Evolution. 4, 1, p. 14-15 2 p.

Research output: Contribution to journalComment/debate

Biochemical basis for the regulation of biosynthesis of antiparasitics by bacterial hormones

Kapoor, I., Olivares, P. & Nair, S. K., Jun 8 2020, (Accepted/In press) In : eLife. 9, e57824.

Research output: Contribution to journalArticle

Open Access

Biodegradable Polyanhydrides as Encapsulation Layers for Transient Electronics

Choi, Y. S., Koo, J., Lee, Y. J., Lee, G., Avila, R., Ying, H., Reeder, J., Hambitzer, L., Im, K., Kim, J., Lee, K. M., Cheng, J., Huang, Y., Kang, S. K. & Rogers, J. A., Jan 1 2020, (Accepted/In press) In : Advanced Functional Materials.

Research output: Contribution to journalArticle

Biodiversity of protists and nematodes in the wild nonhuman primate gut

Mann, A. E., Mazel, F., Lemay, M. A., Morien, E., Billy, V., Kowalewski, M., Di Fiore, A., Link, A., Goldberg, T. L., Tecot, S., Baden, A. L., Gomez, A., Sauther, M. L., Cuozzo, F. P., Rice, G. A. O., Dominy, N. J., Stumpf, R., Lewis, R. J., Swedell, L., Amato, K. & 1 others, Wegener Parfrey, L., Feb 1 2020, In : ISME Journal. 14, 2, p. 609-622 14 p.

Research output: Contribution to journalArticle