Research Output 1960 2018

2018

3D Plasmon Coupling Assisted Sers on Nanoparticle-Nanocup Array Hybrids

Seo, S., Chang, T. W. & Liu, G. L. Dec 1 2018 In : Scientific Reports. 8, 1, 3002

Research output: Contribution to journalArticle

nanoparticles
Raman spectra
augmentation
electromagnetic absorption
light emission

Aberrantly high expression of the CUB and zona pellucida-like domain-containing protein 1 (CUZD1) in mammary epithelium leads to breast tumorigenesis

Mapes, J., Anandan, L., Li, Q., Neff, A., Clevenger, C. V., Bagchi, I. C. & Bagchi, M. K. Jan 1 2018 In : Journal of Biological Chemistry. 293, 8, p. 2850-2864 15 p.

Research output: Contribution to journalArticle

Zona Pellucida
Herpes Zoster
Carcinogenesis
Breast
Epithelium

A caged metabolic precursor for DT-diaphorase-responsive cell labeling

Wang, R., Cai, K., Wang, H., Yin, C. & Cheng, J. Jan 1 2018 In : Chemical Communications. 54, 38, p. 4878-4881 4 p.

Research output: Contribution to journalArticle

Metabolites
Sugars
Labeling
Cells
8-amino-7-oxononanoate synthase
Pimelic Acids
Bacteriology
Carboxylation
bacteriology

Accelerated Thermal Depolymerization of Cyclic Polyphthalaldehyde with a Polymeric Thermoacid Generator

Lopez Hernandez, H., Lee, O. P., Possanza, C., Kaitz, J. A., Park, C. W., Plantz, C. L., Moore, J. S. & White, S. R. Jan 1 2018 (Accepted/In press) In : Macromolecular Rapid Communications.

Research output: Contribution to journalArticle

Beryllium minerals
Passive optical networks
Depolymerization
Carbonates
Reheat cycle

A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models

Tabe-Bordbar, S., Emad, A., Zhao, S. D. & Sinha, S. Dec 1 2018 In : Scientific Reports. 8, 1, 6620

Research output: Contribution to journalArticle

Gene expression
Genes
Supervised learning
Simulated annealing
Genomics
Molluscum contagiosum virus
Vaccinia virus
Virulence
Infection
Virus Replication

A comprehensive genomic history of extinct and living elephants

Palkopoulou, E. , Lipson, M. , Mallick, S. , Nielsen, S. , Rohland, N. , Baleka, S. , Karpinski, E. , Ivancevic, A. M. , To, T. H. , Daniel Kortschak, R. , Raison, J. M. , Qu, Z. , Chin, T. J. , Alt, K. W. , Claesson, S. , Dalén, L. , MacPhee, R. D. E. , Meller, H. , Roca, A. L. , Ryder, O. A. & 17 others Heiman, D., Young, S., Breen, M., Williams, C., Aken, B. L., Ruffier, M., Karlsson, E., Johnson, J., Palma, F. D., Alfoldi, J., Adelson, D. L., Mailund, T., Munch, K., Lindblad-Toh, K., Hofreiter, M., Poinar, H. & Reich, D. Jan 1 2018 In : Proceedings of the National Academy of Sciences of the United States of America. 115, 11, p. E2566-E2574

Research output: Contribution to journalArticle

elephant
genomics
history
ancestry
savanna

Acoustic band gaps and elastic stiffness of PMMA cellular solids based on triply periodic minimal surfaces

Abueidda, D. W., Jasiuk, I. & Sobh, N. A. May 5 2018 In : Materials and Design. 145, p. 20-27 8 p.

Research output: Contribution to journalArticle

Polymethyl Methacrylate
Energy gap
Acoustics
Stiffness
Porosity

Acquisition of the phosphate transporter NptA enhances Staphylococcus aureus pathogenesis by improving phosphate uptake in divergent environments

Kelliher, J. L., Radin, J. N., Grim, K. P., Solórzano, P. K. P., Degnan, P. H. & Kehl-Fie, T. E. Jan 1 2018 In : Infection and Immunity. 86, 1, e00631-17

Research output: Contribution to journalArticle

Bacterial Gene Expression Regulation
Phosphate Transport Proteins
Staphylococcal Infections
Bacterial Proteins
Membrane Transport Proteins

Active sampling-based binary verification of dynamical systems

Quindlen, J. F., Topcu, U., Chowdhary, G. & How, J. P. Jan 1 2018 AIAA Guidance, Navigation, and Control. 210039 ed. American Institute of Aeronautics and Astronautics Inc, AIAA

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dynamical systems
Sampling
Closed loop systems
Temporal logic
Learning algorithms

Adenovirus Replication Cycle Disruption from Exposure to Polychromatic Ultraviolet Irradiation

Vazquez-Bravo, B., Gonçalves, K., Shisler, J. L. & Mariñas, B. J. Mar 20 2018 In : Environmental Science and Technology. 52, 6, p. 3652-3659 8 p.

Research output: Contribution to journalArticle

irradiation
genome
Genes
Irradiation
polymerase chain reaction

Advancing Metabolic Engineering of Saccharomyces cerevisiae Using the CRISPR/Cas System

Lian, J., Hamedirad, M. & Zhao, H. Jan 1 2018 (Accepted/In press) In : Biotechnology Journal.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Metabolic engineering
Metabolic Engineering
Yeast
Saccharomyces cerevisiae

Advancing the ethics of paleogenomics

Bardill, J., Bader, A. C., Garrison, N. A., Bolnick, D. A., Raff, J. A., Walker, A. & Malhi, R. S. Apr 27 2018 In : Science. 360, 6387, p. 384-385 2 p.

Research output: Contribution to journalComment/debate

Age- and sex-dependent effects of methamphetamine on cognitive flexibility and 5-HT2C receptor localization in the orbitofrontal cortex of Sprague-Dawley rats

Hankosky, E. R., Westbrook, S. R., Haake, R. M., Willing, J., Raetzman, L. T., Juraska, J. M. & Gulley, J. M. Sep 3 2018 In : Behavioural Brain Research. 349, p. 16-24 9 p.

Research output: Contribution to journalArticle

Methamphetamine
Prefrontal Cortex
Parvalbumins
Sprague Dawley Rats
Interneurons

Age and sex differences in behavioral flexibility, sensitivity to reward value, and risky decision-making

Westbrook, S. R., Hankosky, E. R., Dwyer, M. R. & Gulley, J. M. Apr 1 2018 In : Behavioral Neuroscience. 132, 2, p. 75-87 13 p.

Research output: Contribution to journalArticle

Reward
Sex Characteristics
Decision Making
Reversal Learning
Sprague Dawley Rats

A high-sensitivity potentiometric 65-nm CMOS ISFET sensor for rapid E. coli Screening

Jiang, Y., Liu, X., Dang, T. C., Huang, X., Feng, H., Zhang, Q. & Yu, H. Apr 1 2018 In : IEEE Transactions on Biomedical Circuits and Systems. 12, 2, p. 402-415 14 p.

Research output: Contribution to journalArticle

Potentiometers (electric measuring instruments)
Ion sensitive field effect transistors
CMOS integrated circuits
Food safety
Logic gates

Airyscan super-resolution microscopy of mitochondrial morphology and dynamics in living tumor cells

Kolossov, V. L., Sivaguru, M., Huff, J., Luby, K., Kanakaraju, K. & Gaskins, H. R. Feb 1 2018 In : Microscopy Research and Technique. 81, 2, p. 115-128 14 p.

Research output: Contribution to journalArticle

Mitochondrial Dynamics
Tumors
Microscopy
Microscopic examination
tumors

A lanthipeptide library used to identify a protein-protein interaction inhibitor article

Yang, X., Lennard, K. R., He, C., Walker, M. C., Ball, A. T., Doigneaux, C., Tavassoli, A. & Van Der Donk, W. A. Apr 1 2018 In : Nature chemical biology. 14, 4, p. 375-380 6 p.

Research output: Contribution to journalArticle

Libraries
Proteins
Human Immunodeficiency Virus Proteins
Ligases
Biological Products

Albumin as a "trojan Horse" for polymeric nanoconjugate transendothelial transport across tumor vasculatures for improved cancer targeting

Yin, Q., Tang, L., Cai, K., Yang, X., Yin, L., Zhang, Y., Dobrucki, L. W., Helferich, W. G., Fan, T. M. & Cheng, J. May 1 2018 In : Biomaterials Science. 6, 5, p. 1189-1200 12 p.

Research output: Contribution to journalArticle

Nanoconjugates
IIR filters
Tumors
Bearings (structural)
Medical nanotechnology

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & DeLucia, E. H. Jan 15 2018 In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journalReview article

alley cropping
species diversity
crop
crops
fodder
Nuts
Microbiota
almonds
nuts
Fermentation

Alpha Lead Oxide (α-PbO): A New 2D Material with Visible Light Sensitivity

Kumar, P., Liu, J., Ranjan, P., Hu, Y., Yamijala, S. S. R. K. C., Pati, S. K., Irudayaraj, J. & Cheng, G. J. Mar 22 2018 In : Small. 14, 12, 1703346

Research output: Contribution to journalArticle

Lead oxide
Photophobia
Photosensitivity
Optics and Photonics
Light

A microfluidic biochip platform for electrical quantification of proteins

Valera, E., Berger, J., Hassan, U., Ghonge, T., Liu, J., Rappleye, M., Winter, J., Abboud, D., Haidry, Z., Healey, R., Hung, N. T., Leung, N., Mansury, N., Hasnain, A., Lannon, C., Price, Z., White, K. & Bashir, R. Jan 1 2018 In : Lab on a Chip. 18, 10, p. 1461-1470 10 p.

Research output: Contribution to journalArticle

Biochips
Microfluidics
Biomarkers
Sepsis
Point-of-Care Systems

A model species for agricultural pest genomics: The genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

Schoville, S. D. , Chen, Y. H. , Andersson, M. N. , Benoit, J. B. , Bhandari, A. , Bowsher, J. H. , Brevik, K. , Cappelle, K. , Chen, M. J. M. , Childers, A. K. , Childers, C. , Christiaens, O. , Clements, J. , Didion, E. M. , Elpidina, E. N. , Engsontia, P. , Friedrich, M. , García-Robles, I. , Gibbs, R. A. , Goswami, C. & 30 others Grapputo, A., Gruden, K., Grynberg, M., Henrissat, B., Jennings, E. C., Jones, J. W., Kalsi, M., Khan, S. A., Kumar, A., Li, F., Lombard, V., Ma, X., Martynov, A., Miller, N. J., Mitchell, R. F., Munoz-Torres, M., Muszewska, A., Oppert, B., Palli, S. R., Panfilio, K. A., Pauchet, Y., Perkin, L. C., Petek, M., Poelchau, M. F., Record, É., Rinehart, J. P., Robertson, H. M., Rosendale, A. J., Ruiz-Arroyo, V. M. & Smagghe, G. Dec 1 2018 In : Scientific Reports. 8, 1, 1931

Research output: Contribution to journalArticle

Leptinotarsa decemlineata
insecticide resistance
Chrysomelidae
pests
Coleoptera

A mutation in PGM2 causing inefficient galactose metabolism in the probiotic yeast Saccharomyces boulardii

Liu, J. J., Zhang, G. C., Kong, I. I., Yun, E. J., Zheng, J. Q., Kweon, D. H. & Jin, Y. S. May 1 2018 In : Applied and Environmental Microbiology. 84, 10, e02858-17

Research output: Contribution to journalArticle

Saccharomyces cerevisiae var. cerevisiae
probiotics
Probiotics
Galactose
Metabolism

A new perspective of the hippocampus in the origin of exercise–brain interactions

Rendeiro, C. & Rhodes, J. S. Apr 18 2018 (Accepted/In press) In : Brain Structure and Function. p. 1-19 19 p.

Research output: Contribution to journalArticle

Hippocampus
Exercise
Brain
Neuronal Plasticity
Neurogenesis

An experimental evaluation of cross-vane PanelTraps for the collection of SylvaticTriatomines (Hemiptera: Reduviidae)

Updyke, E. A. & Allan, B. F. Jan 1 2018 In : Journal of Medical Entomology. 55, 2, p. 485-489 5 p.

Research output: Contribution to journalArticle

Reduviidae
vanes
Hemiptera
Ultraviolet Rays
traps

An indirect design representation for topology optimization using variational autoencoder and style transfer

Guo, T., Lohan, D. J., Allison, J. T., Cang, R. & Ren, Y. Jan 1 2018 AIAA/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials. 210049 ed. American Institute of Aeronautics and Astronautics Inc, AIAA

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Shape optimization
Topology
Computational efficiency
Heat conduction
Scattering

An Online Risk Index for the Cross-Sectional Prediction of New HIV Chlamydia, and Gonorrhea Diagnoses Across U.S. Counties and Across Years

Chan, M. P. S., Lohmann, S., Morales, A., Zhai, C., Ungar, L., Holtgrave, D. R. & Albarracín, D. Feb 9 2018 (Accepted/In press) In : AIDS and Behavior. p. 1-12 12 p.

Research output: Contribution to journalArticle

Chlamydia
Gonorrhea
HIV
Social Media
Vocabulary

An Overview on Additive Manufacturing of Polymers

Jasiuk, I., Abueidda, D. W., Kozuch, C., Pang, S., Su, F. Y. & McKittrick, J. Mar 1 2018 In : JOM. 70, 3, p. 275-283 9 p.

Research output: Contribution to journalArticle

Reheat cycle
3D printers
Neutron activation analysis
Polymers
Printers (computer)

Anterior pituitary transcriptome suggests differences in ACTH release in tame and aggressive foxes

Hekman, J. P., Johnson, J. L., Edwards, W., Vladimirova, A. V., Gulevich, R. G., Ford, A. L., Kharlamova, A. V., Herbeck, Y., Acland, G. M., Raetzman, L. T., Trut, L. N. & Kukekova, A. V. Mar 1 2018 In : G3: Genes, Genomes, Genetics. 8, 3, p. 859-873 15 p.

Research output: Contribution to journalArticle

Transcriptome
Adrenocorticotropic Hormone
Pseudopodia
Exocytosis
Aggression

Anti-apoptotic activity of human matrix metalloproteinase-2 attenuates diabetes mellitus

Nishihama, K., Yasuma, T., Yano, Y., D' Alessandro-Gabazza, C. N., Toda, M., Hinneh, J. A., Baffour Tonto, P., Takeshita, A., Totoki, T., Mifuji-Moroka, R., Kobayashi, T., Iwasa, M., Takei, Y., Morser, J., Cann, I. & Gabazza, E. C. May 1 2018 In : Metabolism: Clinical and Experimental. 82, p. 88-99 12 p.

Research output: Contribution to journalArticle

Diabetes Mellitus
Islets of Langerhans
Apoptosis
Matrix Metalloproteinase 2
Integrins

Antimicrobial behavior of phage endolysin PlyP100 and its synergy with nisin to control Listeria monocytogenes in Queso Fresco

Ibarra-Sánchez, L. A., Van Tassell, M. L. & Miller, M. J. Jun 1 2018 In : Food Microbiology. 72, p. 128-134 7 p.

Research output: Contribution to journalArticle

endolysin
Nisin
nisin
Listeria monocytogenes
bacteriophages

A Post-Transcriptional Feedback Mechanism for Noise Suppression and Fate Stabilization

Hansen, M. M. K., Wen, W. Y., Ingerman, E., Razooky, B. S., Thompson, C. E., Dar, R. D., Chin, C. W., Simpson, M. L. & Weinberger, L. S. Jan 1 2018 (Accepted/In press) In : Cell.

Research output: Contribution to journalArticle

Noise
Time-Lapse Imaging
Messenger RNA
HIV
Protein Splicing

Applications of power ultrasound in oriented modification and degradation of pectin: A review

Wang, W., Chen, W., Zou, M., Lv, R., Wang, D., Hou, F., Feng, H., Ma, X., Zhong, J., Ding, T., Ye, X. & Liu, D. Oct 1 2018 In : Journal of Food Engineering. 234, p. 98-107 10 p.

Research output: Contribution to journalReview article

pectins
Ultrasonics
Environmental technology
Degradation
degradation

Appropriate fossil calibrations and tree constraints uphold the Mesozoic divergence of solenodons from other extant mammals

Springer, M. S., Murphy, W. J. & Roca, A. L. Apr 1 2018 In : Molecular Phylogenetics and Evolution. 121, p. 158-165 8 p.

Research output: Contribution to journalArticle

Hedgehogs
vicariance
Erinaceidae
Calibration
tracer techniques

A Resource for Our Reagents: ACS Reagent Chemicals

Sweedler, J. V. May 1 2018 In : Analytical chemistry. 90, 9, 1 p.

Research output: Contribution to journalEditorial

Zinc plating

A Revised Sociogenomic Model of Personality Traits

Roberts, B. W. Feb 1 2018 In : Journal of Personality. 86, 1, p. 23-35 13 p.

Research output: Contribution to journalArticle

Personality
Developmental Biology
Reading
Phenotype

A roadmap for global synthesis of the plant tree of life

Eiserhardt, W. L. , Antonelli, A. , Bennett, D. J. , Botigué, L. R. , Burleigh, J. G. , Dodsworth, S. , Enquist, B. J. , Forest, F. , Kim, J. T. , Kozlov, A. M. , Leitch, I. J. , Maitner, B. S. , Mirarab, S. , Piel, W. H. , Pérez-Escobar, O. A. , Pokorny, L. , Rahbek, C. , Sandel, B. , Smith, S. A. , Stamatakis, A. & 3 others Vos, R. A., Warnow, T. & Baker, W. J. Jan 1 2018 (Accepted/In press) In : American journal of botany.

Research output: Contribution to journalArticle

synthesis
phylogeny
phylogenetics
informatics
botanists

A Robust Oil-in-Oil Emulsion for the Nonaqueous Encapsulation of Hydrophilic Payloads

Lu, X., Katz, J. S., Schmitt, A. K. & Moore, J. S. Mar 14 2018 In : Journal of the American Chemical Society. 140, 10, p. 3619-3625 7 p.

Research output: Contribution to journalArticle

Oil sand refining
Copper zinc mines
Musical instruments
Emulsions
Encapsulation

A simple and fast method for computing the Poisson binomial distribution function

Biscarri, W., Zhao, S. D. & Brunner, R. J. Jun 1 2018 In : Computational Statistics and Data Analysis. 122, p. 92-100 9 p.

Research output: Contribution to journalArticle

Binomial distribution
Poisson distribution
Distribution functions
Distribution Function
Convolution

Assessing the origin of bacteria in tap water and distribution system in an unchlorinated drinking water system by SourceTracker using microbial community fingerprints

Liu, G., Zhang, Y., van der Mark, E., Magic-Knezev, A., Pinto, A., van den Bogert, B., Liu, W., van der Meer, W. & Medema, G. Jul 1 2018 In : Water Research. 138, p. 86-96 11 p.

Research output: Contribution to journalArticle

distribution system
Potable water
microbial community
Bacteria
drinking water
Social Support
Communication
Interpersonal Relations
Cell Phones
Bees

Automated Phrase Mining from Massive Text Corpora

Shang, J., Liu, J., Jiang, M., Ren, X., Voss, C. R. & Han, J. Mar 3 2018 (Accepted/In press) In : IEEE Transactions on Knowledge and Data Engineering.

Research output: Contribution to journalArticle

Computational linguistics
Knowledge based systems
Automation
Taxonomies
Linguistics

Avalanches and scaling collapse in the large- N Kuramoto model

Coleman, J. P., Dahmen, K. A. & Weaver, R. L. Apr 27 2018 In : Physical Review E. 97, 4, 042219

Research output: Contribution to journalArticle

Kuramoto Model
Avalanche
avalanches
Scaling
scaling

A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms

Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., King, T. L., Amaya, K. R., Arnett, C. M. & Sweedler, J. V. Feb 2 2018 (Accepted/In press) In : Analytical chemistry.

Research output: Contribution to journalArticle

Water recycling
Production control
Biofilms
Imaging techniques
Mass spectrometry

A virus or more in (nearly) every cell: ubiquitous networks of virus–host interactions in extreme environments

Munson-McGee, J. H., Peng, S., Dewerff, S., Stepanauskas, R., Whitaker, R. J., Weitz, J. S. & Young, M. J. Feb 21 2018 (Accepted/In press) In : ISME Journal. p. 1-9 9 p.

Research output: Contribution to journalArticle

virus
Viruses
viruses
Metagenomics
cells

Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: Metabolomics-informed genomics

Liu, D. , Ray, B. , Neavin, D. R. , Zhang, J. , Athreya, A. P. , Biernacka, J. M. , Bobo, W. V. , Hall-Flavin, D. K. , Skime, M. K. , Zhu, H. , Jenkins, G. D. , Batzler, A. , Kalari, K. R. , Boakye-Agyeman, F. , Matson, W. R. , Bhasin, S. S. , Mushiroda, T. , Nakamura, Y. , Kubo, M. , Iyer, R. K. & 4 others Wang, L., Frye, M. A., Kaddurah-Daouk, R. & Weinshilboum, R. M. Dec 1 2018 In : Translational psychiatry. 8, 1, 56

Research output: Contribution to journalArticle

beta-Defensins
Kynurenine
Aryl Hydrocarbon Receptors
Metabolomics
Major Depressive Disorder

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C. Jan 1 2018 In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

bioenergy
Biofuels
feedstocks
biofuels
biofuel