Research Output 1960 2018

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Review article
2017

A New Era of Genome Integration - Simply Cut and Paste!

Liu, Z., Liang, Y., Ang, E. L. & Zhao, H. Apr 21 2017 In : ACS Synthetic Biology. 6, 4, p. 601-609 9 p.

Research output: Contribution to journalReview article

Ointments
Genome
Lutheran Blood-Group System
Homologous Recombination
Cyclic AMP Receptor Protein

Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids

Yu, Y., Cui, C., Wang, J. & Lu, Y. Feb 1 2017 In : Science China Chemistry. 60, 2, p. 188-200 13 p.

Research output: Contribution to journalReview article

Anthralin
Afferent Loop Syndrome
Electrons

Breaking the silence: new strategies for discovering novel natural products

Ren, H., Wang, B. & Zhao, H. Dec 1 2017 In : Current Opinion in Biotechnology. 48, p. 21-27 7 p.

Research output: Contribution to journalReview article

Biological Products
Genes
Multigene Family
Cyclic AMP Receptor Protein
Throughput

Categorizing Cells on the Basis of their Chemical Profiles: Progress in Single-Cell Mass Spectrometry

Comi, T. J., Do, T. D., Rubakhin, S. S. & Sweedler, J. V. Mar 22 2017 In : Journal of the American Chemical Society. 139, 11, p. 3920-3929 10 p.

Research output: Contribution to journalReview article

Exercise Test
mass spectrometry
Mass spectrometry
Mass Spectrometry
Acyclic Acids

Computational optical coherence tomography [invited]

Liu, Y. Z., South, F. A., Xu, Y., Scott Carney, P. & Boppart, S. A. Mar 1 2017 In : Biomedical Optics Express. 8, 3, p. 1549-1574 26 p.

Research output: Contribution to journalReview article

tomography
Optical Coherence Tomography
imaging techniques
Physics
aberration

DNAzyme sensors for detection of metal ions in the environment and imaging them in living cells

McGhee, C. E., Loh, K. Y. & Lu, Y. Jun 1 2017 In : Current Opinion in Biotechnology. 45, p. 191-201 11 p.

Research output: Contribution to journalReview article

Catalytic DNA
Metals
Ions
Kernicterus
Metal ions

Engineering biological systems using automated biofoundries

Chao, R., Mishra, S., Si, T. & Zhao, H. Jul 1 2017 In : Metabolic Engineering. 42, p. 98-108 11 p.

Research output: Contribution to journalReview article

Catatonia
Microbial Genetics
Bioengineering
Biotechnology
Technology

Functional carbon nanodots for multiscale imaging and therapy

Ostadhossein, F. & Pan, D. May 1 2017 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1436

Research output: Contribution to journalReview article

Carbon
Imaging techniques
Adenofibroma
Drug Labeling
Nanostructures

Innovative techniques for evaluating behavioral nutrition interventions

Scherr, R. E., Laugero, K. D., Graham, D. J., Cunningham, B. T., Jahns, L., Lora, K. R., Reicks, M. & Mobley, A. R. 2017 In : Advances in Nutrition. 8, 1, p. 113-125 13 p.

Research output: Contribution to journalReview article

methodology
nutritional intervention
Cell Phones
Biosensing Techniques
Carotenoids

Modification of the Genome of Domestic Animals

Lotti, S. N., Polkoff, K. M., Rubessa, M. & Wheeler, M. B. Jul 3 2017 In : Animal Biotechnology. 28, 3, p. 198-210 13 p.

Research output: Contribution to journalReview article

methodology
Domestic Animals
Genome
Genes
Porphobilinogen Synthase

Photonic crystals: Emerging biosensors and their promise for point-of-care applications

Inan, H., Poyraz, M., Inci, F., Lifson, M. A., Baday, M., Cunningham, B. T. & Demirci, U. Jan 21 2017 In : Chemical Society Reviews. 46, 2, p. 366-388 23 p.

Research output: Contribution to journalReview article

Biosensors
Photonic crystals
Acyclic Acids
Supravalvular Aortic Stenosis
beta-Amylase

Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: A review and perspective

Kwak, S. & Jin, Y. S. May 11 2017 In : Microbial Cell Factories. 16, 1, 82

Research output: Contribution to journalReview article

Xylose
Saccharomyces cerevisiae
HLA Antigens
Yeast
Yeasts

Progress in microalgae cultivation photobioreactors and applications in wastewater treatment: A review

Ting, H., Haifeng, L., Shanshan, M., Zhang, Y., Zhidan, L. & Na, D. 2017 In : International Journal of Agricultural and Biological Engineering. 10, 1, p. 1-29 29 p.

Research output: Contribution to journalReview article

Photobioreactors
Microalgae
Waste Water
microalgae
wastewater treatment

Quantitative phase imaging for medical diagnosis

Majeed, H., Sridharan, S., Mir, M., Ma, L., Min, E., Jung, W. & Popescu, G. Feb 1 2017 In : Journal of Biophotonics. 10, 2, p. 177-205 29 p.

Research output: Contribution to journalReview article

Diagnostic Imaging
Microscopy
microscopy
Library Catalogs
Melorheostosis

Recent advances in DNAzyme-based gene silencing

Fan, H., Zhang, X. & Lu, Y. May 1 2017 In : Science China Chemistry. 60, 5, p. 591-601 11 p.

Research output: Contribution to journalReview article

Bibliography of Medicine
Cyclic AMP Receptor Protein
Fusobacterium
Inborn Errors Amino Acid Metabolism
Afferent Loop Syndrome

Review of cellular mechanotransduction

Wang, N. May 17 2017 In : Journal of Physics D: Applied Physics. 50, 23, 233002

Research output: Contribution to journalReview article

Library Catalogs
Castration
Gene expression
Cells
Tissue

Targeting Specificity of the CRISPR/Cas9 System

Tasan, I. & Zhao, H. Sep 15 2017 In : ACS Synthetic Biology. 6, 9, p. 1609-1613 5 p.

Research output: Contribution to journalReview article

Genes
Clustered Regularly Interspaced Short Palindromic Repeats
Mutagenesis
Target tracking
Standardization

The "ok, molly" chemistry

Lu, Y. 2017 In : Accounts of Chemical Research. 50, 3, p. 647-651 5 p.

Research output: Contribution to journalReview article

Bile Pigments
Poecilia
Education
Caprylates

The ultrastructure of bone and its relevance to mechanical properties

Schwarcz, H. P., Abueidda, D. & Jasiuk, I. Sep 5 2017 In : Frontiers in Physics. 5, SEP, 39

Research output: Contribution to journalReview article

bones
minerals
Bone
Minerals
Bone and Bones

Unraveling atomic-level self-organization at the plasma-material interface

Allain, J. P. & Shetty, A. Jun 28 2017 In : Journal of Physics D: Applied Physics. 50, 28, 283002

Research output: Contribution to journalReview article

Edema Disease of Swine
Callosities
Plasmas
Hand Injuries
Traffic Accidents

Using natural products for drug discovery: the impact of the genomics era

Zhang, M. M., Qiao, Y., Ang, E. L. & Zhao, H. May 4 2017 In : Expert Opinion on Drug Discovery. 12, 5, p. 475-487 13 p.

Research output: Contribution to journalReview article

Drug Discovery
Genomics
Biological Products
Synthetic Biology
Metagenomics
2016

Accelerated genome engineering through multiplexing

Bao, Z., Cobb, R. E. & Zhao, H. Jan 1 2016 In : Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 8, 1, p. 5-21 17 p.

Research output: Contribution to journalReview article

Cyclic AMP Receptor Protein
Genome
Bioengineering
Biological Science Disciplines
Oligonucleotides

ACS Catalysis and the Scope of Papers Sought in Three Catalysis Subdisciplines: Biocatalysis and Enzymology, Molecular Catalysis for Organic Synthesis, and Heterogeneous Photocatalysis

Chang, S., Fornasiero, P., Gunnoe, T. B., Jones, C. W., Linic, S., Ooi, T., Williams, R. M. & Zhao, H. Jul 1 2016 In : ACS Catalysis. 6, 7, p. 4782-4785 4 p.

Research output: Contribution to journalReview article

Catalysis

Analytical capabilities of mass spectrometry imaging and its potential applications in food science

Li, B., Dunham, S. J. B., Dong, Y., Yoon, S., Zeng, M. & Sweedler, J. V. Jan 1 2016 In : Trends in Food Science and Technology. 47, p. 50-63 14 p.

Research output: Contribution to journalReview article

Food Technology
Mass Spectrometry
Food
image analysis
mass spectrometry

Biochemical and biophysical understanding of metal ion selectivity of DNAzymes

Hwang, K., Hosseinzadeh, P. & Lu, Y. 2016 In : Inorganica Chimica Acta. 452, p. 12-24 13 p.

Research output: Contribution to journalReview article

Kernicterus
Metal ions
metal ions
Caprylates
Structural properties

Contact-facilitated drug delivery with Sn2 lipase labile prodrugs optimize targeted lipid nanoparticle drug delivery

Pan, D., Pham, C. T. N., Weilbaecher, K. N., Tomasson, M. H., Wickline, S. A. & Lanza, G. M. Jan 1 2016 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 8, 1, p. 85-106 22 p.

Research output: Contribution to journalReview article

Prodrugs
Lipase
Nanoparticles
Lipids
Drug delivery

Design and engineering of artificial oxygen-activating metalloenzymes

Nastri, F., Chino, M., Maglio, O., Bhagi-Damodaran, A., Lu, Y. & Lombardi, A. Sep 21 2016 In : Chemical Society Reviews. 45, 18, p. 5020-5054 35 p.

Research output: Contribution to journalReview article

Autistic Disorder

Droplet-based biosensing for lab-on-a-chip, open microfluidics platforms

Dak, P., Ebrahimi, A., Swaminathan, V., Duarte-Guevara, C., Bashir, R. & Alam, M. A. 2016 In : Biosensors. 6, 2, 14

Research output: Contribution to journalReview article

Dental Staff
Costs
Microfluidics
Costs and Cost Analysis
Artificial Organs

Electrical Chips for Biological Point-of-Care Detection

Reddy, B., Salm, E. & Bashir, R. Jul 11 2016 In : Annual Review of Biomedical Engineering. 18, p. 329-355 27 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Technology
Delivery of Health Care
Costs and Cost Analysis
Biochips

Emerging trends and opportunities in discrete-frequency infrared and Raman spectroscopic imaging

Wrobel, T. P., Kole, M. R. & Bhargava, R. Jun 1 2016 In : Spectroscopy (Santa Monica). 31, 6

Research output: Contribution to journalReview article

Adenofibroma
Biophysics
microscopy
Biological Availability
Acyclic Acids

Engineering microbial hosts for production of bacterial natural products

Zhang, M. M., Wang, Y., Ang, E. L. & Zhao, H. Aug 1 2016 In : Natural Product Reports. 33, 8, p. 963-987 25 p.

Research output: Contribution to journalReview article

Biological Products
Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing)
Genetic Engineering
Actinobacteria
Genomics

Engineering Synthetic Gene Circuits in Living Cells with CRISPR Technology

Jusiak, B., Cleto, S., Perez-Piñera, P. & Lu, T. K. Jul 1 2016 In : Trends in Biotechnology. 34, 7, p. 535-547 13 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Synthetic Genes
Gene Regulatory Networks
Technology
Agaricales

Fluorescent nanoprobes for sensing and imaging of metal ions: Recent advances and future perspectives

Zhang, J. J., Cheng, F. F., Li, J. J., Zhu, J. J. & Lu, Y. Jun 1 2016 In : Nano Today. 11, 3, p. 309-329 21 p.

Research output: Contribution to journalReview article

Nanoprobes
Nanostructured materials
Metal ions
Imaging techniques
Adenofibroma

Intratumoral Heterogeneity of the Epigenome

Mazor, T., Pankov, A., Song, J. S. & Costello, J. F. Apr 11 2016 In : Cancer Cell. 29, 4, p. 440-451 12 p.

Research output: Contribution to journalReview article

Epigenomics
Neoplasms
Genetic Heterogeneity
Drug Resistance

Magnetomotive Optical Coherence Elastography for Magnetic Hyperthermia Dosimetry Based on Dynamic Tissue Biomechanics

Huang, P. C., Pande, P., Ahmad, A., Marjanovic, M., Spillman, D. R., Odintsov, B. & Boppart, S. A. Jul 1 2016 In : IEEE Journal on Selected Topics in Quantum Electronics. 22, 4, 7355327

Research output: Contribution to journalReview article

Tissue
Nanoparticles
hyperthermia
Optical tomography
Imaging techniques

Medical diagnostics with mobile devices: Comparison of intrinsic and extrinsic sensing

Kwon, L., Long, K. D., Wan, Y., Yu, H. & Cunningham, B. T. May 1 2016 In : Biotechnology Advances. 34, 3, p. 291-304 14 p.

Research output: Contribution to journalReview article

Individualized Medicine
Cell Phones
Tablets
Equipment and Supplies
Global Health

Mitigating health risks associated with alcoholic beverages through metabolic engineering

Jayakody, L. N., Lane, S., Kim, H. & Jin, Y. S. Feb 1 2016 In : Current Opinion in Biotechnology. 37, p. 173-181 9 p.

Research output: Contribution to journalReview article

Metabolic Engineering
Alcoholic Beverages
Yeasts
Health
Yeast

Modelling of bone fracture and strength at different length scales: A review

Sabet, F. A., Najafi, A. R., Hamed, E. & Jasiuk, I. Feb 6 2016 In : Interface Focus. 6, 1, 20150055

Research output: Contribution to journalReview article

Bone Fractures
Bone
Bone and Bones
Cimetidine
Bone Diseases

Quantitative imaging of cell membrane-associated effective mass density using Photonic Crystal Enhanced Microscopy (PCEM)

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A. & Cunningham, B. T. Nov 1 2016 In : Progress in Quantum Electronics. 50, p. 1-18 18 p.

Research output: Contribution to journalReview article

Photonic crystals
cells
Biophysics
Microscopic examination
photonics

Quantum dot surface engineering: Toward inert fluorophores with compact size and bright, stable emission

Lim, S. J., Ma, L., Schleife, A. & Smith, A. M. Aug 1 2016 In : Coordination Chemistry Reviews. 320-321, p. 216-237 22 p.

Research output: Contribution to journalReview article

Edema Disease of Swine
Bile Pigments
Bibliography of Medicine
Adrenal Cortex Neoplasms
Caprylates

Recent advances in biological production of sugar alcohols

Park, Y. C., Oh, E. J., Jo, J. H., Jin, Y. S. & Seo, J. H. Feb 1 2016 In : Current Opinion in Biotechnology. 37, p. 105-113 9 p.

Research output: Contribution to journalReview article

Sugar Alcohols
Alcuronium
Substrates
Erythritol
Catabolite Repression

Recent developments of liposomes as nanocarriers for theranostic applications

Xing, H., Hwang, K. & Lu, Y. 2016 In : Theranostics. 6, 9, p. 1336-1352 17 p.

Research output: Contribution to journalReview article

Liposomes
Lipid Bilayers
Heavy Metals
Genetic Therapy
Immunotherapy

Recommendations for real-time speech MRI

Lingala, S. G., Sutton, B. P., Miquel, M. E. & Nayak, K. S. Jan 1 2016 In : Journal of Magnetic Resonance Imaging. 43, 1, p. 28-44 17 p.

Research output: Contribution to journalReview article

Magnetic Resonance Imaging
Los Angeles
Artifacts
Software
envelopes
statistics
Ultrasonics
scattering
Imaging techniques

Single-cell analysis at the threshold

Chen, X., Love, J. C., Navin, N. E., Pachter, L., Stubbington, M. J. T., Svensson, V., Sweedler, J. V. & Teichmann, S. A. Nov 8 2016 In : Nature Biotechnology. 34, 11, p. 1111-1118 8 p.

Research output: Contribution to journalReview article

Single-Cell Analysis

Solving inverse scattering problems in biological samples by quantitative phase imaging

Kim, T., Zhou, R., Goddard, L. L. & Popescu, G. Jan 1 2016 In : Laser and Photonics Reviews. 10, 1, p. 13-39 27 p.

Research output: Contribution to journalReview article

inverse scattering
tomography
diffraction
Adenofibroma
Pelvic Inflammatory Disease

Standardization for natural product synthetic biology

Zhao, H. & Medema, M. H. Aug 1 2016 In : Natural Product Reports. 33, 8, p. 920-924 5 p.

Research output: Contribution to journalReview article

Synthetic Biology
Biological Products
Competency-Based Education
Multigene Family
Cyclic AMP Receptor Protein

Tandem reactions combining biocatalysts and chemical catalysts for asymmetric synthesis

Wang, Y. & Zhao, H. Dec 1 2016 In : Catalysts. 6, 12, 194

Research output: Contribution to journalReview article

catalysts
synthesis
Afferent Loop Syndrome
Cerebellar Ataxia
Catalysts

Understanding TERT promoter mutations: A common path to immortality

Bell, R. J. A., Rube, H. T., Xavier-Magalhães, A., Costa, B. M., Mancini, A., Song, J. S. & Costello, J. F. Apr 1 2016 In : Molecular Cancer Research. 14, 4, p. 315-323 9 p.

Research output: Contribution to journalReview article

Mutation
Neoplasms
Telomerase
Transcriptional Activation
Carcinogenesis

Use of genome-editing tools to treat sickle cell disease

Tasan, I., Jain, S. & Zhao, H. Sep 1 2016 In : Human Genetics. 135, 9, p. 1011-1028 18 p.

Research output: Contribution to journalReview article

Sickle Cell Anemia
Genome
CRISPR-Associated Proteins
Clustered Regularly Interspaced Short Palindromic Repeats
beta-Globins