Research Output 1960 2018

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Review article
2018

Bioprocess engineering for biohythane production from low-grade waste biomass: technical challenges towards scale up

Liu, Z., Si, B., Li, J., He, J., Zhang, C., Lu, Y., Zhang, Y. & Xing, X. H. Apr 1 2018 In : Current Opinion in Biotechnology. 50, p. 25-31 7 p.

Research output: Research - peer-reviewReview article

Fermentation
Biomass
Biofuels
Industrial applications
Energy efficiency

Recent developments in the application of P450 based biocatalysts

Wei, Y., Ang, E. L. & Zhao, H. Apr 1 2018 In : Current Opinion in Chemical Biology. 43, p. 1-7 7 p.

Research output: Research - peer-reviewReview article

Mixed Function Oxygenases
Enzymes
Biological Products
Cytochrome P-450 Enzyme System
Biosynthesis
2017

Advances in the development of aptamer drug conjugates for targeted drug delivery

Chen, K., Liu, B., Yu, B., Zhong, W., Lu, Y., Zhang, J., Liao, J., Liu, J., Pu, Y., Qiu, L., Zhang, L., Liu, H. & Tan, W. May 1 2017 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1438

Research output: Research - peer-reviewReview article

Pharmaceutical Preparations
Targeted drug delivery
Therapeutics
Oligonucleotides
Biomarkers

A New Era of Genome Integration - Simply Cut and Paste!

Liu, Z., Liang, Y., Ang, E. L. & Zhao, H. Apr 21 2017 In : ACS Synthetic Biology. 6, 4, p. 601-609 9 p.

Research output: Research - peer-reviewReview article

Ointments
Genome
Genes
Homologous Recombination
Synthetic Biology
RNA Precursors
Alternative Splicing
Gene Expression Profiling
RNA
Messenger RNA

Bioconjugated nanoparticles for biosensing, in vivo imaging, and medical diagnostics

Kairdolf, B. A., Qian, X. & Nie, S. Jan 1 2017 In : Analytical Chemistry. 89, 2, p. 1015-1031 17 p.

Research output: Research - peer-reviewReview article

Bio-nano interface: The impact of biological environment on nanomaterials and their delivery properties

Cai, K., Wang, A. Z., Yin, L. & Cheng, J. Oct 10 2017 In : Journal of Controlled Release. 263, p. 211-222 12 p.

Research output: Research - peer-reviewReview article

Nanomedicine
Nanostructures
Medicine

Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids

Yu, Y., Cui, C., Wang, J. & Lu, Y. Feb 1 2017 In : Science China Chemistry. 60, 2, p. 188-200 13 p.

Research output: Research - peer-reviewReview article

Metalloproteins
Amino Acids
Azurin
Ribonucleotide Reductases
Catalysts

Breaking the silence: new strategies for discovering novel natural products

Ren, H., Wang, B. & Zhao, H. Dec 1 2017 In : Current Opinion in Biotechnology. 48, p. 21-27 7 p.

Research output: Research - peer-reviewReview article

Biological Products
Genes
Multigene Family
Throughput
Pharmaceutical Preparations

Categorizing Cells on the Basis of their Chemical Profiles: Progress in Single-Cell Mass Spectrometry

Comi, T. J., Do, T. D., Rubakhin, S. S. & Sweedler, J. V. Mar 22 2017 In : Journal of the American Chemical Society. 139, 11, p. 3920-3929 10 p.

Research output: Research - peer-reviewReview article

amplification
metabolite
mass spectrometry
chemical
Metabolites

Computational optical coherence tomography [invited]

Liu, Y. Z., South, F. A., Xu, Y., Scott Carney, P. & Boppart, S. A. Mar 1 2017 In : Biomedical Optics Express. 8, 3, p. 1549-1574 26 p.

Research output: Research - peer-reviewReview article

imaging techniques
tomography
Optical Coherence Tomography
aberration
high speed

DNAzyme sensors for detection of metal ions in the environment and imaging them in living cells

McGhee, C. E., Loh, K. Y. & Lu, Y. Jun 1 2017 In : Current Opinion in Biotechnology. 45, p. 191-201 11 p.

Research output: Research - peer-reviewReview article

Metal ions
Cells
Imaging techniques
Sensors
Catalytic DNA

Engineering biological systems using automated biofoundries

Chao, R., Mishra, S., Si, T. & Zhao, H. Jul 1 2017 In : Metabolic Engineering. 42, p. 98-108 11 p.

Research output: Research - peer-reviewReview article

Foundries
Biological systems
Biotechnology
Industrial plants
Networks (circuits)

Functional carbon nanodots for multiscale imaging and therapy

Ostadhossein, F. & Pan, D. May 1 2017 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1436

Research output: Research - peer-reviewReview article

Imaging techniques
Carbon
Therapeutics
Biocompatibility
Nanostructured materials

Innovative techniques for evaluating behavioral nutrition interventions

Scherr, R. E., Laugero, K. D., Graham, D. J., Cunningham, B. T., Jahns, L., Lora, K. R., Reicks, M. & Mobley, A. R. Jan 1 2017 In : Advances in Nutrition. 8, 1, p. 113-125 13 p.

Research output: Research - peer-reviewReview article

nutritional intervention
methodology
Biosensing Techniques
Carotenoids
Research Personnel

Integration of microfluidics in animal in vitro embryo production

Wheeler, M. B. & Rubessa, M. Jan 1 2017 In : Molecular Human Reproduction. 23, 4, p. 248-256 9 p.

Research output: Research - peer-reviewReview article

Microfluidics
Embryonic Structures
In Vitro Techniques
Mammalian Embryo
Livestock

Lessons learned from nanoscale specimens tested by MEMS-based apparatus

Elhebeary, M. & Saif, M. T. A. May 19 2017 In : Journal of Physics D: Applied Physics. 50, 24, 243001

Research output: Research - peer-reviewReview article

lessons learned
microelectromechanical systems
MEMS
materials tests
prognosis

Metabolic engineering of oleaginous yeasts for production of fuels and chemicals

Shi, S. & Zhao, H. Nov 8 2017 In : Frontiers in Microbiology. 8, NOV, 2185

Research output: Research - peer-reviewReview article

Metabolic Engineering
Yeasts
Genetic Engineering
Lipids
Lipomyces

Metabolic engineering of yeast for lignocellulosic biofuel production

Jin, Y. S. & Cate, J. H. D. Dec 1 2017 In : Current Opinion in Chemical Biology. 41, p. 99-106 8 p.

Research output: Research - peer-reviewReview article

Metabolic Engineering
Biofuels
Yeasts
Metabolic engineering
Biomass

Modification of the Genome of Domestic Animals

Lotti, S. N., Polkoff, K. M., Rubessa, M. & Wheeler, M. B. Jul 3 2017 In : Animal Biotechnology. 28, 3, p. 198-210 13 p.

Research output: Research - peer-reviewReview article

domestic animals
genome
methodology
Domestic Animals
Genome

New advances in nanotechnology-based diagnosis and therapeutics for breast cancer: An assessment of active-targeting inorganic nanoplatforms

Falagan-Lotsch, P., Grzincic, E. M. & Murphy, C. J. Jan 1 2017 In : Bioconjugate Chemistry. 28, 1, p. 135-152 18 p.

Research output: Research - peer-reviewReview article

Nanotechnology
Breast Neoplasms
Therapeutics
Nanoparticles
Medical nanotechnology

Photonic crystals: Emerging biosensors and their promise for point-of-care applications

Inan, H., Poyraz, M., Inci, F., Lifson, M. A., Baday, M., Cunningham, B. T. & Demirci, U. Jan 21 2017 In : Chemical Society Reviews. 46, 2, p. 366-388 23 p.

Research output: Research - peer-reviewReview article

Photonic crystals
Biosensors
Telemedicine
Intelligent materials
Metamaterials

Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: A review and perspective

Kwak, S. & Jin, Y. S. May 11 2017 In : Microbial Cell Factories. 16, 1, 82

Research output: Research - peer-reviewReview article

Xylose
Saccharomyces cerevisiae
Yeasts
Metabolism
Glucose

Progress in microalgae cultivation photobioreactors and applications in wastewater treatment: A review

Ting, H., Haifeng, L., Shanshan, M., Zhang, Y., Zhidan, L. & Na, D. 2017 In : International Journal of Agricultural and Biological Engineering. 10, 1, p. 1-29 29 p.

Research output: Research - peer-reviewReview article

Photobioreactors
Microalgae
Waste Water
wastewater treatment
microalgae

Quantitative phase imaging for medical diagnosis

Majeed, H., Sridharan, S., Mir, M., Ma, L., Min, E., Jung, W. & Popescu, G. Feb 1 2017 In : Journal of Biophotonics. 10, 2, p. 177-205 29 p.

Research output: Research - peer-reviewReview article

Diagnostic Imaging
Microscopy
Imaging techniques
microscopy
Optical microscopy

Recent advances in DNAzyme-based gene silencing

Fan, H., Zhang, X. & Lu, Y. May 1 2017 In : Science China Chemistry. 60, 5, p. 591-601 11 p.

Research output: Research - peer-reviewReview article

Genes
RNA
DNA
Phosphorylation
Single-Stranded DNA

Review of cellular mechanotransduction

Wang, N. May 17 2017 In : Journal of Physics D: Applied Physics. 50, 23, 233002

Research output: Research - peer-reviewReview article

Gene expression
Cells
Tissue
gene expression
human body

Synthetic polypeptides: From polymer design to supramolecular assembly and biomedical application

Song, Z., Han, Z., Lv, S., Chen, C., Chen, L., Yin, L. & Cheng, J. Nov 7 2017 In : Chemical Society Reviews. 46, 21, p. 6570-6599 30 p.

Research output: Research - peer-reviewReview article

Polymers
Peptides
Hydrogels
Ring opening polymerization
Micelles

Targeting Specificity of the CRISPR/Cas9 System

Tasan, I. & Zhao, H. Sep 15 2017 In : ACS Synthetic Biology. 6, 9, p. 1609-1613 5 p.

Research output: Research - peer-reviewReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Therapeutics
Genes
Insertional Mutagenesis
Research Personnel

The 2017 Plasma Roadmap: Low temperature plasma science and technology

Adamovich, I. , Baalrud, S. D. , Bogaerts, A. , Bruggeman, P. J. , Cappelli, M. , Colombo, V. , Czarnetzki, U. , Ebert, U. , Eden, J. G. , Favia, P. , Graves, D. B. , Hamaguchi, S. , Hieftje, G. , Hori, M. , Kaganovich, I. D. , Kortshagen, U. , Kushner, M. J. , Mason, N. J. , Mazouffre, S. , Thagard, S. M. & 18 others Metelmann, H. R., Mizuno, A., Moreau, E., Murphy, A. B., Niemira, B. A., Oehrlein, G. S., Petrovic, Z. L., Pitchford, L. C., Pu, Y. K., Rauf, S., Sakai, O., Samukawa, S., Starikovskaia, S., Tennyson, J., Terashima, K., Turner, M. M., Van De Sanden, M. C. M. & Vardelle, A. Jul 14 2017 In : Journal of Physics D: Applied Physics. 50, 32, 323001

Research output: Research - peer-reviewReview article

Plasmas
Temperature
cold plasmas
physics
Physics

The "ok, molly" chemistry

Lu, Y. 2017 In : Accounts of Chemical Research. 50, 3, p. 647-651 5 p.

Research output: Research - peer-reviewReview article

The ultrastructure of bone and its relevance to mechanical properties

Schwarcz, H. P., Abueidda, D. & Jasiuk, I. Sep 5 2017 In : Frontiers in Physics. 5, SEP, 39

Research output: Research - peer-reviewReview article

Ultrastructure
Bone
Mechanical Properties
Relevance
bones

Unraveling atomic-level self-organization at the plasma-material interface

Allain, J. P. & Shetty, A. Jun 28 2017 In : Journal of Physics D: Applied Physics. 50, 28, 283002

Research output: Research - peer-reviewReview article

Plasmas
Irradiation
irradiation
Beam plasma interactions
Surface treatment

Use of Pig as a Model for Mesenchymal Stem Cell Therapies for Bone Regeneration

Rubessa, M., Polkoff, K., Bionaz, M., Monaco, E., Milner, D. J., Holllister, S. J., Goldwasser, M. S. & Wheeler, M. B. Oct 2 2017 In : Animal Biotechnology. 28, 4, p. 275-287 13 p.

Research output: Research - peer-reviewReview article

Bone Regeneration
Cell- and Tissue-Based Therapy
Mesenchymal Stromal Cells
Swine
Bone and Bones

Using natural products for drug discovery: the impact of the genomics era

Zhang, M. M., Qiao, Y., Ang, E. L. & Zhao, H. May 4 2017 In : Expert Opinion on Drug Discovery. 12, 5, p. 475-487 13 p.

Research output: Research - peer-reviewReview article

Drug Discovery
Genomics
Biological Products
Synthetic Biology
Metagenomics
2016

Accelerated genome engineering through multiplexing

Bao, Z., Cobb, R. E. & Zhao, H. Jan 1 2016 In : Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 8, 1, p. 5-21 17 p.

Research output: Research - peer-reviewReview article

Genome
Multiplexing
Genes
Bioengineering
Biological Science Disciplines

ACS Catalysis and the Scope of Papers Sought in Three Catalysis Subdisciplines: Biocatalysis and Enzymology, Molecular Catalysis for Organic Synthesis, and Heterogeneous Photocatalysis

Chang, S., Fornasiero, P., Gunnoe, T. B., Jones, C. W., Linic, S., Ooi, T., Williams, R. M. & Zhao, H. Jul 1 2016 In : ACS Catalysis. 6, 7, p. 4782-4785 4 p.

Research output: Research - peer-reviewReview article

Catalysis

Analytical capabilities of mass spectrometry imaging and its potential applications in food science

Li, B., Dunham, S. J. B., Dong, Y., Yoon, S., Zeng, M. & Sweedler, J. V. Jan 1 2016 In : Trends in Food Science and Technology. 47, p. 50-63 14 p.

Research output: Research - peer-reviewReview article

food science
image analysis
mass spectrometry
Food Technology
Mass Spectrometry

Biochemical and biophysical understanding of metal ion selectivity of DNAzymes

Hwang, K., Hosseinzadeh, P. & Lu, Y. Jan 1 2016 In : Inorganica Chimica Acta. 452, p. 12-24 13 p.

Research output: Research - peer-reviewReview article

Metal ions
Structural properties
Metals
metal ions
selectivity

Considerations of Environmentally Relevant Test Conditions for Improved Evaluation of Ecological Hazards of Engineered Nanomaterials

Holden, P. A. , Gardea-Torresdey, J. L. , Klaessig, F. , Turco, R. F. , Mortimer, M. , Hund-Rinke, K. , Cohen Hubal, E. A. , Avery, D. , Barceló, D. , Behra, R. , Cohen, Y. , Deydier-Stephan, L. , Ferguson, P. L. , Fernandes, T. F. , Herr Harthorn, B. , Henderson, W. M. , Hoke, R. A. , Hristozov, D. , Johnston, J. M. , Kane, A. B. & 20 others Kapustka, L., Keller, A. A., Lenihan, H. S., Lovell, W., Murphy, C. J., Nisbet, R. M., Petersen, E. J., Salinas, E. R., Scheringer, M., Sharma, M., Speed, D. E., Sultan, Y., Westerhoff, P., White, J. C., Wiesner, M. R., Wong, E. M., Xing, B., Steele Horan, M., Godwin, H. A. & Nel, A. E. Jun 21 2016 In : Environmental Science and Technology. 50, 12, p. 6124-6145 22 p.

Research output: Research - peer-reviewReview article

hazard
test
exposure
evaluation
Nanostructured materials

Contact-facilitated drug delivery with Sn2 lipase labile prodrugs optimize targeted lipid nanoparticle drug delivery

Pan, D., Pham, C. T. N., Weilbaecher, K. N., Tomasson, M. H., Wickline, S. A. & Lanza, G. M. Jan 1 2016 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 8, 1, p. 85-106 22 p.

Research output: Research - peer-reviewReview article

Medical nanotechnology
Prodrugs
Lipase
Drug delivery
Phospholipids

Design and engineering of artificial oxygen-activating metalloenzymes

Nastri, F., Chino, M., Maglio, O., Bhagi-Damodaran, A., Lu, Y. & Lombardi, A. Sep 21 2016 In : Chemical Society Reviews. 45, 18, p. 5020-5054 35 p.

Research output: Research - peer-reviewReview article

Oxygen
Metals
Proteins

Droplet-based biosensing for lab-on-a-chip, open microfluidics platforms

Dak, P., Ebrahimi, A., Swaminathan, V., Duarte-Guevara, C., Bashir, R. & Alam, M. A. Jan 1 2016 In : Biosensors. 6, 2, 14

Research output: Research - peer-reviewReview article

Lab-on-a-chip
Microfluidics
Costs
Costs and Cost Analysis
Biosensors

Electrical Chips for Biological Point-of-Care Detection

Reddy, B., Salm, E. & Bashir, R. Jul 11 2016 In : Annual Review of Biomedical Engineering. 18, p. 329-355 27 p.

Research output: Research - peer-reviewReview article

Point-of-Care Systems
Biochips
Publications
Technology
Delivery of Health Care

Emerging trends and opportunities in discrete-frequency infrared and Raman spectroscopic imaging

Wrobel, T. P., Kole, M. R. & Bhargava, R. Jun 1 2016 In : Spectroscopy (Santa Monica). 31, 6

Research output: Research - peer-reviewReview article

emerging
microscopy
trends
Microscopic examination
Infrared radiation

Engineering microbial hosts for production of bacterial natural products

Zhang, M. M., Wang, Y., Ang, E. L. & Zhao, H. Aug 1 2016 In : Natural Product Reports. 33, 8, p. 963-987 25 p.

Research output: Research - peer-reviewReview article

Biological Products
Genetic Engineering
Actinobacteria
Genomics
Fermentation

Engineering Synthetic Gene Circuits in Living Cells with CRISPR Technology

Jusiak, B., Cleto, S., Perez-Piñera, P. & Lu, T. K. Jul 1 2016 In : Trends in Biotechnology. 34, 7, p. 535-547 13 p.

Research output: Research - peer-reviewReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Synthetic Genes
Gene Regulatory Networks
Technology
Genes

Fluorescent nanoprobes for sensing and imaging of metal ions: Recent advances and future perspectives

Zhang, J. J., Cheng, F. F., Li, J. J., Zhu, J. J. & Lu, Y. Jun 1 2016 In : Nano Today. 11, 3, p. 309-329 21 p.

Research output: Research - peer-reviewReview article

Nanoprobes
Nanostructured materials
Metal ions
Imaging techniques
Nanostructures

Magnetomotive Optical Coherence Elastography for Magnetic Hyperthermia Dosimetry Based on Dynamic Tissue Biomechanics

Huang, P. C., Pande, P., Ahmad, A., Marjanovic, M., Spillman, D. R., Odintsov, B. & Boppart, S. A. Jul 1 2016 In : IEEE Journal on Selected Topics in Quantum Electronics. 22, 4, 7355327

Research output: Research - peer-reviewReview article

Biomechanics
Dosimetry
Tissue
Nanoparticles
biodynamics

Medical diagnostics with mobile devices: Comparison of intrinsic and extrinsic sensing

Kwon, L., Long, K. D., Wan, Y., Yu, H. & Cunningham, B. T. May 1 2016 In : Biotechnology Advances. 34, 3, p. 291-304 14 p.

Research output: Research - peer-reviewReview article

Point-of-Care Systems
Handheld Computers
Precision Medicine
Equipment and Supplies
Global Health