Research Output 1970 2019

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Letter
2019

Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows

Shah, N., Nute, M. G., Warnow, T. & Pop, M., May 1 2019, In : Bioinformatics. 35, 9, p. 1613-1614 2 p.

Research output: Contribution to journalLetter

Workflow
Bioinformatics
Computational Biology
Work Flow
Correctness

Phenotyping photosynthesis on the limit - a critical examination of RACiR

Taylor, S. H. & Long, S. P., Jan 1 2019, In : The New phytologist. 221, 2, p. 621-624 4 p.

Research output: Contribution to journalLetter

Open Access
Ribulose-Bisphosphate Carboxylase
Photosynthesis
ribulose-bisphosphate carboxylase
global change
photosynthesis

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

ethanol
Tumor Microenvironment
Confocal Microscopy
Neoplasms

Serotonin transporter–ibogaine complexes illuminate mechanisms of inhibition and transport

Coleman, J. A., Yang, D., Zhao, Z., Wen, P. C., Yoshioka, C., Tajkhorshid, E. & Gouaux, E., Jan 1 2019, In : Nature.

Research output: Contribution to journalLetter

Ibogaine
Serotonin Plasma Membrane Transport Proteins
Plasma Membrane Neurotransmitter Transport Proteins
Serotonin
Neurotransmitter Agents
2018

Cooperative asymmetric reactions combining photocatalysis and enzymatic catalysis

Litman, Z. C., Wang, Y., Zhao, H. & Hartwig, J. F., Aug 16 2018, In : Nature. 560, 7718, p. 355-359 5 p.

Research output: Contribution to journalLetter

Alkenes
Catalysis
Regeneration
Stereoisomerism
Enzymes

Effect of tissue staining in quantitative phase imaging

Ban, S., Min, E., Ahn, Y., Popescu, G. & Jung, W., Aug 1 2018, In : Journal of Biophotonics. 11, 8, e201700402.

Research output: Contribution to journalLetter

staining
Tissue
Staining and Labeling
Imaging techniques
optical properties

KBase: The United States department of energy systems biology knowledgebase

Arkin, A. P., Cottingham, R. W., Henry, C. S., Harris, N. L., Stevens, R. L., Maslov, S., Dehal, P., Ware, D., Perez, F., Canon, S., Sneddon, M. W., Henderson, M. L., Riehl, W. J., Murphy-Olson, D., Chan, S. Y., Kamimura, R. T., Kumari, S., Drake, M. M., Brettin, T. S., Glass, E. M. & 61 othersChivian, D., Gunter, D., Weston, D. J., Allen, B. H., Baumohl, J., Best, A. A., Bowen, B., Brenner, S. E., Bun, C. C., Chandonia, J. M., Chia, J. M., Colasanti, R., Conrad, N., Davis, J. J., Davison, B. H., Dejongh, M., Devoid, S., Dietrich, E., Dubchak, I., Edirisinghe, J. N., Fang, G., Faria, J. P., Frybarger, P. M., Gerlach, W., Gerstein, M., Greiner, A., Gurtowski, J., Haun, H. L., He, F., Jain, R., Joachimiak, M. P., Keegan, K. P., Kondo, S., Kumar, V., Land, M. L., Meyer, F., Mills, M., Novichkov, P. S., Oh, T., Olsen, G. J., Olson, R., Parrello, B., Pasternak, S., Pearson, E., Poon, S. S., Price, G. A., Ramakrishnan, S., Ranjan, P., Ronald, P. C., Schatz, M. C., Seaver, S. M. D., Shukla, M., Sutormin, R. A., Syed, M. H., Thomason, J., Tintle, N. L., Wang, D., Xia, F., Yoo, H., Yoo, S. & Yu, D., Jul 6 2018, In : Nature Biotechnology. 36, 7, p. 566-569 4 p.

Research output: Contribution to journalLetter

Systems Biology
2017

Saturated absorption competition microscopy

Zhao, G., Kabir, M. M., Toussaint, K. C., Kuang, C., Zheng, C., Yu, Z. & Liu, X., Jun 20 2017, In : Optica. 4, 6, p. 633-636 4 p.

Research output: Contribution to journalLetter

Microscopic examination
microscopy
Imaging techniques
Diffraction
Fluorescence
2016

3D implementation of the symbol nomenclature for graphical representation of glycans

Thieker, D. F., Hadden, J. A., Schulten, K. J. & Woods, R. J., Aug 1 2016, In : Glycobiology. 26, 8, p. 786-787 2 p.

Research output: Contribution to journalLetter

2014

Author response

Mishra, S., Verhalen, B., Stein, R. A., Wen, P. C., Tajkhorshid, E. & Mchaourab, H. S., May 16 2014, In : eLife. 2014, 3, e02740.

Research output: Contribution to journalLetter

2012

A European science plan to sustainably increase food security under climate change

Soussana, J. F., Fereres, E., Long, S. P., Mohren, F. G. M. J., Pandya-Lorch, R., Peltonen-Sainio, P., Porter, J. R., Rosswall, T. & von Braun, J., Nov 1 2012, In : Global change biology. 18, 11, p. 3269-3271 3 p.

Research output: Contribution to journalLetter

food security
climate change
science
plan
2011

Competencies: A cure for pre-med curriculum

Anderson, W. A., Amasino, R. M., Ares, M., Banerjee, U., Bartel, B., Corces, V. G., Drennan, C. L., Elgin, S. C. R., Epstein, I. R., Fanning, E., Guillette, L. J., Handelsman, J. O., Hatfull, G. F., Hoy, R. R., Kelley, D., Leinwand, L. A., Losick, R., Lu, Y., Lynn, D. G., Neuhauser, C. & 13 othersO'Dowd, D. K., Olivera, T., Pevzner, P., Richards-Kortum, R. R., Rine, J., Sah, R. L., Strobel, S. A., Walker, G. C., Walt, D. R., Warner, I. M., Wessler, S., Willard, H. F. & Zare, R. N., Nov 11 2011, In : Science. 334, 6057, p. 760-761 2 p.

Research output: Contribution to journalLetter

Curriculum
2010

Suk and Aluru reply

Suk, M. E. & Aluru, N. R., Nov 8 2010, In : Physical review letters. 105, 20, 209402.

Research output: Contribution to journalLetter

2008
Food supply
Greenhouse effect
Carbon Monoxide
Carbon Dioxide
Climate change
2007
Spectrum Analysis
Neoplasms

Response [3]

Long, S. P., Ainsworth, E., Leakey, A., Ort, D. R., Nösberger, J. & Schimel, D., Jan 26 2007, In : Science. 315, 5811, 1 p.

Research output: Contribution to journalLetter

2004

A O(N) semipredictive universal encoder via the BWT

Baron, D. & Bresler, Y., May 1 2004, In : IEEE Transactions on Information Theory. 50, 5, p. 928-937 10 p.

Research output: Contribution to journalLetter

Data compression
Redundancy
redundancy
coding
symbol

Complementarities and convergence of results in bacteriorhodopsin trimer simulations [2] (multiple letters)

Baudry, J., Tajkhorshid, E., Schultent, K., Kandt, C., Schlitter, J. & Gerwert, K., Jan 1 2004, In : Biophysical journal. 87, 2, p. 1394-1395 2 p.

Research output: Contribution to journalLetter

Chemical Models
Artificial Membranes
Bacteriorhodopsins
Protein Conformation
Molecular Models

How Much at Risk Are Cone Snails? [3] (multiple letters)

Duda, T. F., Bingham, J. P., Livett, B. G., Kohn, A. J., Massilia, G. R., Schultz, J. R., Down, J., Sandall, D., Sweedler, J. V., Fainzilber, M., Chivian, E., Roberts, C. M. & Bernstein, A. S., Feb 13 2004, In : Science. 303, 5660, p. 955-957 3 p.

Research output: Contribution to journalLetter

2001

A bound on mutual information for image registration

Skouson, M. B., Quo, Q. & Liang, Z-P., Aug 1 2001, In : IEEE Transactions on Medical Imaging. 20, 8, p. 843-845 3 p.

Research output: Contribution to journalLetter

Image registration
Entropy

Coupled oxidation of heme by myoglobin is mediated by exogenous peroxide

Sigman, J. A., Wang, X. & Lu, Y., Oct 2 2001, In : Journal of the American Chemical Society. 123, 28, p. 6945-6946 2 p.

Research output: Contribution to journalLetter

Myoglobin
Peroxides
Heme
Catalysis
Animals
2000

A highly sensitive and selective catalytic DNA biosensor for lead ions [9]

Li, J. & Lu, Y., Oct 25 2000, In : Journal of the American Chemical Society. 122, 42, p. 10466-10467 2 p.

Research output: Contribution to journalLetter

Catalytic DNA
Biosensing Techniques
Biosensors
Lead
Ions

Eden et al. Reply

Eden, J. G., Gao, J. & Shen, F., Jan 1 2000, In : Physical review letters. 84, 18, 1 p.

Research output: Contribution to journalLetter

1999

Design and creation of a Cu(II)-binding site in cytochrome c peroxidase that mimics the Cu(B)-heme center in terminal oxidases [5]

Sigman, J. A., Kwok, B. C., Gengenbach, A. & Lu, Y., Sep 29 1999, In : Journal of the American Chemical Society. 121, 38, p. 8949-8950 2 p.

Research output: Contribution to journalLetter

Cytochrome-c Peroxidase
Binding sites
Heme
Oxidoreductases
Binding Sites
Nuclear magnetic resonance
Experiments

The role of histidine ligands in the structure of purple Cu(A) azurin [23]

Wang, X., Berry, S. M., Xia, Y. & Lu, Y., Aug 18 1999, In : Journal of the American Chemical Society. 121, 32, p. 7449-7450 2 p.

Research output: Contribution to journalLetter

Azurin
Histidine
Ligands
1998

Spectroscopic evidence for inner-sphere coordination of metal ions to the active site of a hammerhead ribozyme

Cunningham, L. A., Li, J. & Lu, Y., May 13 1998, In : Journal of the American Chemical Society. 120, 18, p. 4518-4519 2 p.

Research output: Contribution to journalLetter

Metal ions
Catalytic Domain
Metals
Ions
hammerhead ribozyme
1973

Hard sphere diffusion model and the velocity autocorrelation function for the Lennard-Jones fluid

Kim, K. & Chandler, D., Dec 1 1973, In : The Journal of Chemical Physics. 59, 9, p. 5217-5218 2 p.

Research output: Contribution to journalLetter

Autocorrelation
autocorrelation
Fluids
fluids