Research Output 1973 2020

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2020

Revisiting Replication-Induced Transcription in Escherichia coli

Golding, I., Jan 1 2020, In : BioEssays. 42, 1, 1900193.

Research output: Contribution to journalComment/debate

2019

Author Correction: Targeted exon skipping with AAV-mediated split adenine base editors (Cell Discovery, (2019), 5, 1, (41), 10.1038/s41421-019-0109-7)

Winter, J., Luu, A., Gapinske, M., Manandhar, S., Shirguppe, S., Woods, W. S., Song, J. S. & Perez-Pinera, P., Dec 1 2019, In : Cell Discovery. 5, 1, 56.

Research output: Contribution to journalComment/debate

Open Access
Adenine
Exons
Labeling
Publications

Author Correction: Building a global alliance of biofoundries (Nature Communications, (2019), 10, 1, (2040), 10.1038/s41467-019-10079-2)

Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., Bell, D. J., Feuvre, R. L., Friedman, D. C., Fu, X., Gold, N. D., Herrgård, M. J., Holowko, M. B., Johnson, J. R., Johnson, R. A., Keasling, J. D., Kitney, R. I., Kondo, A., Liu, C., Martin, V. J. J. & 16 others, Menolascina, F., Ogino, C., Patron, N. J., Pavan, M., Poh, C. L., Pretorius, I. S., Rosser, S. J., Scrutton, N. S., Storch, M., Tekotte, H., Travnik, E., Vickers, C. E., Yew, W. S., Yuan, Y., Zhao, H. & Freemont, P. S., Dec 1 2019, In : Nature communications. 10, 1, 3132.

Research output: Contribution to journalComment/debate

Open Access
foundries
Queensland
Foundries
communication
Genome

Building a global alliance of biofoundries

Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., Bell, D. J., Le Feuvre, R., Friedman, D. C., Fu, X., Gold, N. D., Herrgård, M. J., Holowko, M. B., Johnson, J. R., Johnson, R. A., Keasling, J. D., Kitney, R. I., Kondo, A., Liu, C., Martin, V. J. J. & 16 others, Menolascina, F., Ogino, C., Patron, N. J., Pavan, M., Poh, C. L., Pretorius, I. S., Rosser, S. J., Scrutton, N. S., Storch, M., Tekotte, H., Travnik, E., Vickers, C. E., Yew, W. S., Yuan, Y., Zhao, H. & Freemont, P. S., Dec 1 2019, In : Nature communications. 10, 1, 2040.

Research output: Contribution to journalComment/debate

Open Access
biotechnology
Biotechnology
organisms
Testing
Research

Correction to: Allosteric interactions in human cytochrome P450 CYP3A4: The role of phenylalanine 213 (Biochemistry (2019) 58: 10 (1411-1422) DOI: 10.1021/acs.biochem.8b01268)

Denisov, I. G., Grinkova, Y. V., Nandigrami, P., Shekhar, M., Tajkhorshid, E. & Sligar, S. G., Jun 18 2019, In : Biochemistry. 58, 24, 1 p.

Research output: Contribution to journalComment/debate

Cytochrome P-450 CYP3A
Biochemistry
Phenylalanine
Cytochrome P-450 Enzyme System

Correction to: Superplastic Formation of Metal Nanostructure Arrays with Ultrafine Gaps (Advanced Materials, (2016), 28, 41, (9152-9162), 10.1002/adma.201602497)

Hu, Y., Xuan, Y., Wang, X., Deng, B., Saei, M., Jin, S., Irudayaraj, J. & Cheng, G. J., Apr 5 2019, In : Advanced Materials. 31, 14, 1900190.

Research output: Contribution to journalComment/debate

Open Access
Nanostructures
Metals
Lasers
Nanoparticles
Ultrafine

Gabor’s holography at sea

Popescu, G., Dec 1 2019, In : Light: Science and Applications. 8, 1, 19.

Research output: Contribution to journalComment/debate

Holography
holography

Publisher Correction: Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis (Scientific Reports, (2017), 7, 1, (10800), 10.1038/s41598-017-09766-1)

Taneja, I., Reddy, B., Damhorst, G., Zhao, S. D., Hassan, U., Price, Z., Jensen, T., Ghonge, T., Patel, M., Wachspress, S., Winter, J., Rappleye, M., Smith, G., Healey, R., Ajmal, M., Khan, M., Patel, J., Rawal, H., Sarwar, R., Soni, S. & 6 others, Anwaruddin, S., Davis, B., Kumar, J., White, K., Bashir, R. & Zhu, R., Dec 1 2019, In : Scientific reports. 9, 1, 17419.

Research output: Contribution to journalComment/debate

Open Access
Sepsis
Biomarkers
2018

An Emerging Pathway of Doxorubicin Cardiotoxicity Mediated through CYP2J2

Arnold, W. R. & Das, A., Apr 24 2018, In : Biochemistry. 57, 16, p. 2294-2296 3 p.

Research output: Contribution to journalComment/debate

Naphthacenes
Gene Expression Regulation
Arachidonic Acid
Doxorubicin
Cytochrome P-450 Enzyme System

Correction to: Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines (Advanced Functional Materials, (2018), 28, 23, (1801145), 10.1002/adfm.201801145)

Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Aug 15 2018, In : Advanced Functional Materials. 28, 33, 1804580.

Research output: Contribution to journalComment/debate

walking machines
Functional materials
lists
Fabrication
fabrication

Erratum: Farming with crops and rocks to address global climate, food and soil security (Nature Plants (2018), DOI: 10.1038/s41477-018-0108-y)

Beerling, D. J., Leake, J. R., Long, S. P., Scholes, J. D., Ton, J., Nelson, P. N., Bird, M., Kantzas, E., Taylor, L. L., Sarkar, B., Kelland, M., Delucia, E., Kantola, I., Müller, C., Rau, G. H. & Hansen, J., Jun 1 2018, In : Nature Plants. 4, 6, 1 p.

Research output: Contribution to journalComment/debate

acidification
farming systems
rocks
climate
crops
Molecular Dynamics Simulation
Molecular Biology
Nanotechnology
DNA

Erratum to: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. (Nature Genetics, (2018), 50, 11, (1565-1573), 10.1038/s41588-018-0237-2)

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Dec 1 2018, In : Nature Genetics. 50, 12, 1 p.

Research output: Contribution to journalComment/debate

Saccharum
Alleles
Genome
Molecular Sequence Annotation
Databases

Erratum to: Targeting wild-type KRAS-amplified gastroesophageal cancer through combined MEK and SHP2 inhibition (Nature Medicine, (2018), 24, 7, (968-977), 10.1038/s41591-018-0022-x)

Wong, G. S., Zhou, J., Bin Liu, J., Wu, Z., Xu, X., Li, T., Xu, D., Schumacher, S. E., Puschhof, J., McFarland, J., Zou, C., Dulak, A., Henderson, L., Xu, P., O’Day, E., Rendak, R., Liao, W. L., Cecchi, F., Hembrough, T., Schwartz, S. & 18 others, Szeto, C., Rustgi, A. K., Wong, K. K., Diehl, J. A., Jensen, K., Graziano, F., Ruzzo, A., Fereshetian, S., Mertins, P., Carr, S. A., Beroukhim, R., Nakamura, K., Oki, E., Watanabe, M., Baba, H., Imamura, Y., Catenacci, D. & Bass, A. J., Oct 1 2018, In : Nature Medicine. 24, 10, 1 p.

Research output: Contribution to journalComment/debate

Open Access
Mitogen-Activated Protein Kinase Kinases
Medicine
Actins
Neoplasms
Hand
Research
Stimulus
Vignettes
Research Methods
2017
Peer Review
Microfluidics
Embryonic Structures
corrigendum
In Vitro Techniques

Fourth environment-enhancing energy (E2-energy) conference in Beijing, China, july 8-10, 2016

Zhidan, L., Zhang, Y., He, B. B. & Qiang, L., Jan 1 2017, In : International Journal of Agricultural and Biological Engineering. 10, 1, p. 256-258 3 p.

Research output: Contribution to journalComment/debate

China
energy
Beijing
2016

Anisotropic nanoparticles: General discussion

Castelli, A., Striolo, A., Roig, A., Murphy, C., Reguera, J., Liz-Marzán, L., Mueller, A., Critchley, K., Zhou, Y., Brust, M., Thill, A., Scarabelli, L., Tadiello, L., König, T. A. F., Reiser, B., López-Quintela, M. A., Buzza, M., Deák, A., Kuttner, C., Gonzalez Solveyra, E. & 15 others, Pasquato, L., Portehault, D., Mattoussi, H., Kotov, N. A., Kumacheva, E., Heatley, K., Bergueiro, J., González, G., Tong, W., Tahir, M. N., Abécassis, B., Rojas-Carrillo, O., Xia, Y., Mayer, M. & Peddis, D., Jan 1 2016, In : Faraday Discussions. 191, p. 229-254 26 p.

Research output: Contribution to journalComment/debate

Applications: General discussion

Striolo, A., Sicard, F., Liz-Marzán, L., Murphy, C., Roig, A., Mueller, A., Reguera, J., Zhou, Y., Brust, M., Scarabelli, L., Tadiello, L., Thill, A., Yarovsky, I., Mayer, M., López-Quintela, M. A., Kuttner, C., Gonzalez Solveyra, E., Wolf, H., Kay, E., Pasquato, L. & 13 others, Buceta, D., Portehault, D., Mattoussi, H., González, G., Faller, R., French, D., Abécassis, B., Stevens, M., Xia, Y., Jones, R., Grzelczak, M., Penna, M. & Drummond, C., Jan 1 2016, In : Faraday Discussions. 191, p. 565-595 31 p.

Research output: Contribution to journalComment/debate

Corrigendum: Contractile dynamics change before morphological cues during fluorescence illumination

Knoll, S. G., Ahmed, W. W. & Saif, T. A., Feb 18 2016, In : Scientific reports. 6, 21218.

Research output: Contribution to journalComment/debate

Erratum: Point-of-service, quantitative analysis of ascorbic acid in aqueous humor for evaluating anterior globe integrity (Scientific Reports (2016) 5:16011 DOI: 10.1038/srep16011)

Gartia, M. R., Misra, S. K., Ye, M., Schwartz-Duval, A., Plucinski, L., Zhou, X., Kellner, D., Labriola, L. T. & Pan, D., Feb 12 2016, In : Scientific Reports. 6, 20452.

Research output: Contribution to journalComment/debate

Shape memory effect
printing
Printing
adhesion
Adhesion

Flexible Electronics: An Epidermal Stimulation and Sensing Platform for Sensorimotor Prosthetic Control, Management of Lower Back Exertion, and Electrical Muscle Activation (Adv. Mater. 22/2016)

Xu, B., Akhtar, A., Liu, Y., Chen, H., Yeo, W. H., Park, S. I. I., Boyce, B., Kim, H., Yu, J., Lai, H. Y., Jung, S., Zhou, Y., Kim, J., Cho, S., Huang, Y., Bretl, T. & Rogers, J. A., Jun 8 2016, In : Advanced Materials. 28, 22, 1 p.

Research output: Contribution to journalComment/debate

Sensory feedback
Flexible electronics
Physical Exertion
Electromyography
Sensory Feedback

Janus and patchy nanoparticles: General discussion

Striolo, A., Kim, J., Liz-Marzán, L., Tadiello, L., Pauly, M., Murphy, C., Roig, A., Gracias, D., Xia, Y., Reguera, J., Mueller, A., Critchley, K., Brust, M., Scarabelli, L., Mayer, M., Thiele, M., Buzza, M., Deák, A., Bago Rodriguez, A. M., Kuttner, C. & 16 others, Wolf, H., Kay, E., Stocco, A., Portehault, D., Mattoussi, H., Heatley, K., Kumacheva, E., González, G., Hanske, C., Tong, W., Tahir, M. N., Abécassis, B., Granick, S., Duguet, E., Synytska, A. & Velikov, K., Jan 1 2016, In : Faraday Discussions. 191, p. 117-139 23 p.

Research output: Contribution to journalComment/debate

Nanopore Sequencing: Graphene Nanopores for Protein Sequencing (Adv. Funct. Mater. 27/2016)

Wilson, J., Sloman, L., He, Z. & Aksimentiev, A., Jul 19 2016, In : Advanced Functional Materials. 26, 27, 1 p.

Research output: Contribution to journalComment/debate

Nanopores
sequencing
Graphene
graphene
proteins

Particles at interfaces: General discussion

Striolo, A., Kim, J., Murphy, C., Liz-Marzán, L., Lahann, J., Reguera, J., Zhou, Y., Brust, M., Thill, A., Scarabelli, L., König, T. A. F., Buzza, M., Kuttner, C., Gonzalez Solveyra, E., Wolf, H., Vermant, J., Pauly, M., Harvie, A., Pasquato, L., Stocco, A. & 9 others, Mattoussi, H., Kumacheva, E., Heatley, K., Hanske, C., Faller, R., French, D., Honciuc, A., Binks, B. & Sicard, F., Jan 1 2016, In : Faraday Discussions. 191, p. 407-434 28 p.

Research output: Contribution to journalComment/debate

Standardizing the resolution claims for coherent microscopy

Horstmeyer, R., Heintzmann, R., Popescu, G., Waller, L. & Yang, C., Feb 1 2016, In : Nature Photonics. 10, 2, p. 68-71 4 p.

Research output: Contribution to journalComment/debate

Microscopic examination

Transgenic bovine as bioreactors: Challenges and perspectives

Monzani, P. S., Adona, P. R., Ohashi, O. M., Meirelles, F. V. & Wheeler, M. B., Apr 1 2016, In : Bioengineered. 7, 3, p. 123-131 9 p.

Research output: Contribution to journalComment/debate

Recombinant proteins
Bioreactors
Recombinant Proteins
Milk
Proteins
2015

Correction to: Genome-Wide Analyses Reveal a Role for Peptide Hormones in Planarian Germline Development(PLoS Biol, (2015), 13,8)

Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A., Aug 14 2015, In : PLoS biology. 13, 8, e1002234.

Research output: Contribution to journalComment/debate

Planarians
peptide hormones
Peptide Hormones
germ cells
Genome
sequencing
deoxyribonucleic acid
signatures

Erratum: Computational high-resolution optical imaging of the living human retina (Nature Photonics (2015) 9 (440-443))

Shemonski, N. D., South, F. A., Liu, Y. Z., Adie, S. G., Carney, P. S. & Boppart, S. A., Sep 29 2015, In : Nature Photonics. 9, 10, 1 p.

Research output: Contribution to journalComment/debate

retina
Photonics
photonics
Imaging techniques
high resolution

Erratum: Label-free characterization of emerging human neuronal networks (Scientific Reports (2015) 4 (4434) DOI: 10.1038/srep04434)

Mir, M., Kim, T., Majumder, A., Xiang, M., Wang, R., Liu, S. C., Gillette, M. U., Stice, S. & Popescu, G., Jun 30 2015, In : Scientific reports. 5, 11311.

Research output: Contribution to journalComment/debate

Physical chemistry
Nanopores
DNA

Erratum to optical coherence tomography for the diagnosis and evaluation of human otitis media [J Korean Med Sci 2015; 30: 328-335]

Cho, N. H., Lee, S. H., Jung, W., Jang, J. H., Boppart, S. A. & Kim, J., Jan 1 2015, In : Journal of Korean Medical Science. 30, 6, 1 p.

Research output: Contribution to journalComment/debate

Optical Coherence Tomography
Otitis Media
Middle Ear
Reproducibility of Results
Sensitivity and Specificity

Expanding the Biology Toolkit

Bertozzi, C., Ge, H., Ma, J. & Milenkovic, O., Dec 3 2015, In : Cell. 163, 6, 1 p.

Research output: Contribution to journalComment/debate

Jun-Long Zhang

Zhang, J. L., Che, C. M. & Lu, Y., Jan 2015, In : ChemPlusChem. 80, 1, 1 p.

Research output: Contribution to journalComment/debate

Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds"

Cracraft, J., Houde, P., Ho, S. Y. W., Mindell, D. P., Fjeldså, J., Lindow, B., Edwards, S. V., Rahbek, C., Mirarab, S., Warnow, T., Gilbert, M. T. P., Zhang, G., Braun, E. L. & Jarvis, E. D., Sep 25 2015, In : Science. 349, 6255, p. 1460-b

Research output: Contribution to journalComment/debate

Birds
Biological Extinction
Genome
Phylogeny

Targeting leukemic stem cells with multifunctional bioactive polypeptide nanoparticles

Uckun, F. M., Qazi, S. & Cheng, J., Apr 1 2015, In : Future Oncology. 11, 8, p. 1149-1152 4 p.

Research output: Contribution to journalComment/debate

Sialic Acid Binding Ig-like Lectin 2
Gene Knockdown Techniques
Precision Medicine
Biological Therapy
Drug Carriers
2014

Erratum: Context-dependent remodeling of Rad51-DNA complexes by Srs2 is mediated by a specific protein-protein interaction (Journal of Molecular Biology (2014) 426 (1883-1897))

Lytle, A. K., Origanti, S. S., Qiu, Y., Vongermeten, J., Myong, S. & Antony, E., Sep 9 2014, In : Journal of Molecular Biology. 426, 18, p. 3195-3196 2 p.

Research output: Contribution to journalComment/debate

Molecular Biology
DNA
Proteins

Uranium extraction: Coordination chemistry in the ocean

Lu, Y., Mar 1 2014, In : Nature Chemistry. 6, 3, p. 175-176 2 p.

Research output: Contribution to journalComment/debate

Metal Nanoparticles
Uranium
Metal nanoparticles
Oceans and Seas
Proteins
2013
Atomistic Simulation
Graphite
Graphene
Silicon
Mechanical Properties
information theory
Information theory
transaction
Decomposition

Erratum: Ultrafast thermal analysis of surface functionalized gold nanorods in aqueous solution (ACS Nano (2013) 7 (589-597) DOI: 10.1021/nn304738u)

Huang, J., Park, J., Wang, W., Murphy, C. J. & Cahill, D. G., Apr 23 2013, In : ACS Nano. 7, 4, 1 p.

Research output: Contribution to journalComment/debate

Nanorods
Gold
Thermoanalysis
nanorods
thermal analysis

Erratum: Compressed-sensing MRI with random encoding (IEEE Transactions on Medical Imaging)

Haldar, J. P., Hernando, D. & Liang, Z-P., Jul 22 2013, In : IEEE Transactions on Medical Imaging. 32, 7, 1 p., 6548022.

Research output: Contribution to journalComment/debate

Compressed sensing
Medical imaging
Diagnostic Imaging
Magnetic resonance imaging
2012

An enhanced protein crosslink identification strategy using CID-cleavable chemical crosslinkers and LC/MS n analysis

Liu, F., Wu, C., Sweedler, J. V. & Goshe, M. B., Feb 1 2012, In : Proteomics. 12, 3, p. 401-405 5 p.

Research output: Contribution to journalComment/debate

Peptides
aspartyl-proline
Proteins
Cross-Linking Reagents
Optical resolving power

Erratum: Rotations of the 2B sub-domain of E. coli UvrD helicase/translocase coupled to nucleotide and DNA binding (J. Mol. Biol. (2011) 411/3 (633-648))

Jia, H., Korolev, S., Niedziela-Majka, A., Maluf, N. K., Gauss, G. H., Myong, S., Ha, T., Waksman, G. & Lohman, T. M., May 4 2012, In : Journal of Molecular Biology. 418, 3-4, p. 264-265 2 p.

Research output: Contribution to journalComment/debate

Nucleotides
Escherichia coli
DNA

Model-guided strain improvement: Simultaneous hydrolysis and co-fermentation of cellulosic sugars

Jin, Y-S. & Cate, J. H. D., Mar 1 2012, In : Biotechnology Journal. 7, 3, p. 328-329 2 p.

Research output: Contribution to journalComment/debate

Fermentation
Hydrolysis
Ethanol
Cellulase
Plant Cells
2011

A single-molecule view of chaperonin cooperativity

Ha, T. & Myong, S., Oct 11 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 41, p. 16865-16866 2 p.

Research output: Contribution to journalComment/debate

Chaperonin Containing TCP-1
Chaperonins
Adenosine Triphosphate
Enzymes