Bioengineering

2012

Interventional MRI with sparse sampling using union-of-subspaces

Babacan, S. D., Lam, F., Peng, X., Do, M. N. & Liang, Z-P., Aug 15 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 314-317 4 p. 6235547. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Interventional Magnetic Resonance Imaging

Magnetic resonance imaging

Sampling

Imaging techniques

Magnetic resonance

Investigation of bacterial biofilms in the human middle ear using OCT techniques and acoustic measurements

Nguyen, C. T., Jung, W., Robinson, S., Allen, J. B. & Boppart, S. A., 2012, Biomedical Optics, BIOMED 2012.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

middle ear

biofilms

acoustic measurement

Optical Coherence Tomography

Middle Ear

In vivo imaging of dynamic shear modulus of rodent mammary tumors using ultrasound

Wang, Y. & Insana, M., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 859-860 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Tumors

Elastic moduli

Ultrasonics

Imaging techniques

Rodentia

ITEM: Immersive telepresence for entertainment and meetings with commodity setup

Nguyen, V. A., Vu, T. D., Yang, H., Lu, J. & Do, M. N., Dec 26 2012, MM 2012 - Proceedings of the 20th ACM International Conference on Multimedia. p. 1021-1024 4 p. (MM 2012 - Proceedings of the 20th ACM International Conference on Multimedia).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Communication

Merging

Pipelines

Internet

Processing

Learning doubly sparse transforms for image representation

Ravishankar, S. & Bresler, Y., Dec 1 2012, 2012 IEEE International Conference on Image Processing, ICIP 2012 - Proceedings. p. 685-688 4 p. 6466952. (Proceedings - International Conference on Image Processing, ICIP).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Glossaries

Image processing

Image compression

Learning sparsifying transforms for image processing

Ravishankar, S. & Bresler, Y., Dec 1 2012, 2012 IEEE International Conference on Image Processing, ICIP 2012 - Proceedings. p. 681-684 4 p. 6466951. (Proceedings - International Conference on Image Processing, ICIP).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Glossaries

Image processing

Image denoising

Discrete cosine transforms

Singular value decomposition

Loss of cell adhesion in colon cancer cells during in vitro metastasis measured by bio-mems force sensor

Tang, X. & Saif, M. T. A., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 251-252 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Cell adhesion

Adhesion

Cells

Sensors

MEMS

Magnetomotive contrast in optical coherence tomography for detecting early-stage atherosclerosis using targeted microspheres

Ahmad, A., Kim, J. S., Li, J., Rasio, J., Hubler, Z., Chaney, E. J., Marjanovic, M., Suslick, K. S. & Boppart, S. A., Dec 1 2012, Biomedical Optics, BIOMED 2012. p. BTu3A.85 (Biomedical Optics, BIOMED 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

arteriosclerosis

aorta

Optical Coherence Tomography

Microspheres

Atherosclerosis

Mechanical communication between cardiac cell leads to synchrony in beating

Tang, X., Bajaj, P., Bashir, R. & Saif, T., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 333-334 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Elastic moduli

Stiffness

Communication

Microscopic SPECT imaging with micro-ring apertures and high resolution semiconductor detectors

Lai, X. C., Cai, L. & Meng, L. J., Dec 1 2012, 2012 IEEE Nuclear Science Symposium and Medical Imaging Conference Record, NSS/MIC 2012. p. 3153-3156 4 p. 6551719. (IEEE Nuclear Science Symposium Conference Record).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Semiconductors

Single-Photon Emission-Computed Tomography

apertures

rings

high resolution

Model-free compression creep methods for differentiation of lesion from background tissue

Nabavizadehrafsanjani, A., Amador, C., Urban, M. W., Alizad, A., Agrawal, O., Greenleaf, J. F., Insana, M. & Fatemi, M., Dec 1 2012, 2012 IEEE International Ultrasonics Symposium, IUS 2012. p. 2533-2535 3 p. 6562517. (IEEE International Ultrasonics Symposium, IUS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

lesions

tangents

Modified distorted born iterative method for ultrasound tomography by random sampling

Tran-Duc, T., Linh-Trung, N. & Do, M. N., Dec 1 2012, 2012 International Symposium on Communications and Information Technologies, ISCIT 2012. p. 1065-1068 4 p. 6380850. (2012 International Symposium on Communications and Information Technologies, ISCIT 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Iterative methods

Tomography

Ultrasonics

Sampling

Imaging techniques

Multi-scale characterization of novel aluminum-carbon nanocomposites

Nilufar, S., Siddiqi, S. & Jasiuk, I., 2012, Materials Science and Technology Conference and Exhibition 2012, MS and T 2012. Vol. 1. p. 701-707 7 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Aluminum

Nanocomposites

Carbon

Mechanical testing

Indentation

Nanopore sensors for DNA analysis

Solovyeva, V., Venkatesan, B. M., Shim, J., Banerjee, S., Rivera, J. & Bashir, R., Jul 23 2012, Micro- and Nanotechnology Sensors, Systems, and Applications IV. 83730O. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8373).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Nanopore

Nanopores

DNA

deoxyribonucleic acid

solid state

Near-net shape structures fabricated by micro-robotic deposition using precision extrusion control

Hoelzle, D. J., Alleyne, A. G. & Johnson, A. J. W., Jan 1 2012, ASME/ISCIE 2012 International Symposium on Flexible Automation, ISFA 2012. American Society of Mechanical Engineers (ASME), p. 271-278 8 p. (ASME/ISCIE 2012 International Symposium on Flexible Automation, ISFA 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Scaffolds

Extrusion

Robotics

Bone

Microstructure

Novel metal-matrix composites with integrally-bound nanoscale carbon

Forrest, D. R., Jasiuk, I., Brown, L., Joyce, P., Mansour, A. & Salamanca-Riba, L., Aug 20 2012, Technical Proceedings of the 2012 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2012. p. 560-563 4 p. (Technical Proceedings of the 2012 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Aluminum

Nanostructured materials

Copper

Carbon

Metals

Optical parametric amplification of weak signals for imaging of scattering biological tissue

Zhao, Y., Liu, Y., Graf, B. W., Tu, H. & Boppart, S. A., Dec 1 2012, Frontiers in Optics, FIO 2012. (Frontiers in Optics, FIO 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

scattering

Optimizing the design of FT-IR spectroscopic imaging instruments to obtain increased spatial resolution of chemical species

Reddy, R., Mayerich, D., Walsh, M., Schulmerich, M., Carney, P. S. & Bhargava, R., Aug 15 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 354-357 4 p. 6235557. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Fourier Analysis

Fourier transforms

Imaging systems

Tissue

Infrared radiation

Patterning anisotropic collagen scaffolds for tendon insertion regeneration

Caliari, S. R., Weisgerber, D. W., Hortensius, R. A., Kelkhoff, D. O., Ramirez, M. A. & Harley, B. A., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 393-394 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Tendons

Scaffolds

Collagen

Phase contrast spectroscopy using spatial light modulator

Pham, H. & Popescu, G., Dec 1 2012, Biomedical Optics, BIOMED 2012. p. BM4B.7 (Biomedical Optics, BIOMED 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

phase contrast

light modulators

Microspheres

Spectrum Analysis

Erythrocytes

Phase derivative microscopy for label-free imaging of dynamic biological structures

Kim, T. & Popescu, G., Dec 1 2012, Biomedical Optics, BIOMED 2012. (Biomedical Optics, BIOMED 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

light modulation

Microscopy

microscopes

microscopy

Light

Photonic crystals: A versatile platform for optics-based biological detection

Cunningham, B. T., Mar 19 2012, Silicon Photonics VII. 826609. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8266).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Photonic crystals

Photonic Crystal

Optics

platforms

photonics

Plasmonic nanogap-enhanced raman scattering using a resonant nanodome array

Wu, H. Y., Choi, C. J. & Cunningham, B. T., 2012, CLEO: Science and Innovations, CLEO_SI 2012.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Raman scattering

Metabolites

Optical properties

Substrates

Plasmonic nanogap-enhanced Raman scattering using a resonant nanodome array

Wu, H. Y., Choi, C. J. & Cunningham, B. T., Dec 6 2012, 2012 Conference on Lasers and Electro-Optics, CLEO 2012. 6325721. (2012 Conference on Lasers and Electro-Optics, CLEO 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Raman scattering

Metabolites

Optical properties

Substrates

Primary care imaging using optical coherence tomography for advanced point-of-care diagnostics

Boppart, S. A., Dec 1 2012, Frontiers in Optics, FIO 2012. (Frontiers in Optics, FIO 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

magnification

screening

tomography

illumination

Probabilistic low-rank subspace clustering

Babacan, S. D., Nakajima, S. & Do, M. N., Dec 1 2012, Advances in Neural Information Processing Systems 25: 26th Annual Conference on Neural Information Processing Systems 2012, NIPS 2012. p. 2744-2752 9 p. (Advances in Neural Information Processing Systems; vol. 4).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Factorization

Quantitative phase imaging in biomedicine

Popescu, G., Dec 1 2012, CLEO: Science and Innovations, CLEO_SI 2012. p. CTu3J.5 (CLEO: Science and Innovations, CLEO_SI 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Imaging techniques

Quantitative ultrasound assessment of thermal damage in excised liver

Kemmerer, J. P., Ghoshal, G. & Oelze, M. L., Dec 1 2012, 11th International Symposium on Therapeutic Ultrasound. p. 169-174 6 p. (AIP Conference Proceedings; vol. 1481).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

liver

damage

attenuation coefficients

microstructure

acoustics

Quantitative ultrasound techniques and improvements to diagnostic ultrasonic imaging

Oelze, M. L., Dec 1 2012, 2012 IEEE International Ultrasonics Symposium, IUS 2012. p. 232-239 8 p. 6561978. (IEEE International Ultrasonics Symposium, IUS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

imaging techniques

ultrasonics

envelopes

statistics

scattering

Quartz-based photonic crystal surfaces for multiplexed cancer biomarker detection

Huang, C. S., Chaudhery, V., Polans, J., Lu, M., Cunningham, B. T., Pokhriyal, A., George, S. & Zangar, R. C., Dec 1 2012, IEEE SENSORS 2012 - Proceedings. 6411036. (Proceedings of IEEE Sensors).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Photonic crystals

Antibodies

Labels

Quartz

Fluorescence

Registration and integration of multiple depth images using signed distance function

Kubacki, D. B., Bui, H. Q., Babacan, S. D. & Do, M. N., Mar 13 2012, Proceedings of SPIE-IS and T Electronic Imaging - Computational Imaging X. 82960Z. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8296).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Distance Function

Signed

Registration

Cameras

Camera

Simultaneous enhancement of current and breakdown voltage in AlGaN / GaN MOSHEMTs using sputtered / PECVD gate-dielectrics

Pang, L. & Kim, K., 2012, 2012 IEEE Power and Energy Conference at Illinois, PECI 2012. 6184602

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Gate dielectrics

High electron mobility transistors

Plasma enhanced chemical vapor deposition

Electric breakdown

Drain current

Simultaneous lasing on the D₁ and D₂ lines of sodium

Hewitt, J. D. & Eden, J. G., Dec 1 2012, Quantum Electronics and Laser Science Conference, QELS 2012. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Inert gases

lasing

rare gases

Sodium

sodium

Simultaneous lasing on the D₁ and D₂ lines of sodium

Hewitt, J. D. & Eden, J. G., Dec 6 2012, 2012 Conference on Lasers and Electro-Optics, CLEO 2012. 6326511. (2012 Conference on Lasers and Electro-Optics, CLEO 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Noble Gases

Inert gases

Sodium

Simultaneous lasing on the D ₁ and D ₂ lines of sodium

Hewitt, J. D. & Eden, J. G., Dec 1 2012, CLEO: Applications and Technology, CLEO_AT 2012. (CLEO: Applications and Technology, CLEO_AT 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Noble Gases

Inert gases

Sodium

Sodium D-line laser pumped by photodissociation of Na-Xe pairs

Hewitt, J. D. & Eden, J. G., Dec 1 2012, Laser Science, LS 2012. (Laser Science, LS 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Photodissociation

Photoexcitation

Sodium

Lasers

Spectroscopy for intact particles

Dijk, T. V., Bhargava, R. & Scott Carney, P., Dec 1 2012, Computational Optical Sensing and Imaging, COSI 2012. (Computational Optical Sensing and Imaging, COSI 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Microscopic examination

Physics

Spectroscopy

chemistry

microscopy

Structure dependent interface adsorption in polymer nanocomposites

Ciprari, D., Nunnery, L., Jasiuk, I., Tannenbaum, R. & Jacob, K. I., Jan 1 2012, ECCM 2012 - Composites at Venice, Proceedings of the 15th European Conference on Composite Materials. European Conference on Composite Materials, ECCM, (ECCM 2012 - Composites at Venice, Proceedings of the 15th European Conference on Composite Materials).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Nanocomposites

Polymers

Metals

Adsorption

Organic polymers

Subwavelength photonics for biosensing

Cunningham, B. T., Dec 1 2012, Integrated Photonics Research, Silicon and Nanophotonics, IPRSN 2012. (Integrated Photonics Research, Silicon and Nanophotonics, IPRSN 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

metabolites

biomarkers

serums

drugs

cancer

Tensile properties and collagen organization of the rat cervix

Wagoner Johnson, A. J., Poellmann, M., McFarlin, B. L. & Chien, E. K., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 1247-1248 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Tensile properties

Collagen

Rats

Three-dimensional fourier-transform second-harmonic generation microscopy for quantification of collagen fiber organization in biological tissues

Lau, T. Y., Ambekar, R. & Toussaint, K. C., Dec 1 2012, Frontiers in Optics, FIO 2012. (Frontiers in Optics, FIO 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

fiber orientation

collagens

harmonic generations

microscopy

fibers

Three-dimensional quantitative ultrasound to guide pathologists towards metastatic foci in lymph nodes

Mamou, J., Saegusa-Beecroft, E., Coron, A., Oelze, M. L., Yamaguchi, T., MacHi, J., Hata, M., Yanagihara, E., Laugier, P. & Feleppa, E. J., Dec 14 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 1114-1117 4 p. 6346130. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Lymph Nodes

Ultrasonics

Transducers

Radio

ROC Curve

TrueSight: Self-training algorithm for splice junction detection using RNA-seq

Li, Y., Li, H. M., Burns, P., Borodovsky, M., Robinson, G. E. & Ma, J., May 15 2012, Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Proceedings. p. 163-164 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7262 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Training Algorithm

RNA

Sequencing

Alternative Splicing

Semi-supervised Learning

Ultraviolet absorption and excitation spectroscopy of rare-earth-doped glass fibers derived from glassy and crystalline preforms

Dragic, P. D., Liu, Y. S., Galvin, T. C. & Eden, J. G., Apr 17 2012, Fiber Lasers IX: Technology, Systems, and Applications. 82370T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8237).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Rare earth-doped fibers

preforms

ultraviolet absorption

ultraviolet spectroscopy

glass fibers

Upsampling and denoising of depth maps via joint-segmentation

Tallón, M., Derin Babacan, S., Mateos, J., Do, M. N., Molina, R. & Katsaggelos, A. K., 2012, Proceedings of the 20th European Signal Processing Conference, EUSIPCO 2012. p. 245-249 5 p. 6334071

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Color

Cameras

Image quality

Imaging techniques

Costs

Using magnetic resonance to image the pharynx during Arabic speech: Static and dynamic aspects

Shosted, R. K., Sutton, B. P. & Benmamoun, A., Dec 1 2012, INTERSPEECH-2012. p. 2179-2182 4 p. (13th Annual Conference of the International Speech Communication Association 2012, INTERSPEECH 2012; vol. 3).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Magnetic resonance

Magnetic resonance imaging

Acoustic waves

Pixels

time

Weighted mode filtering and its applications to depth video enhancement and coding

Min, D., Lu, J., Nguyen, V. A. & Do, M. N., Oct 23 2012, 2012 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2012 - Proceedings. p. 5433-5436 4 p. 6289150. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Color

Bins

Pixels

White light diffraction phase microscopy (wDPM) for quantitative phase imaging

Bhaduri, B. & Popescu, G., Dec 1 2012, Biomedical Optics, BIOMED 2012. (Biomedical Optics, BIOMED 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Microscopy

microscopy

Light

diffraction

cells

2013

22 nm node wafer inspection using diffraction phase microscopy and image post-processing

Zhou, R., Popescu, G. & Goddard, L. L., Jun 10 2013, Metrology, Inspection, and Process Control for Microlithography XXVII. 86810G. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8681).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Post-processing

Microscopy

Wafer

Inspection

Diffraction

3D fabrication of biological machines

Chan, V., Kong, H. J. & Bashir, R., Oct 31 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 314-317 4 p. 6609500. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Biomaterials

Cells

Fabrication

Biocompatible Materials

Cell Count