Research Output 1960 2018

Filter
Conference contribution
2017

Achieving uniformity and reproducibility for photonic crystal fluorescence enhanced disease diagnostic microarrays

Race, C. M., Kwon, L. & Cunningham, B. T. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808961

Research output: ResearchConference contribution

Photonic crystals
Fluorescence
Assays
Scanning
Lasers

An automated microfluidic assay for the detection of cancer biomarkers in serum using photonic crystal enhanced fluorescence

Kwon, L., Race, C., Foreman, M. & Cunningham, B. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808960

Research output: ResearchConference contribution

Photonic crystals
Microfluidics
Assays
Fluorescence
Tumor Biomarkers

Automatic parameter tuning for image denoising with learned sparsifying transforms

Pfister, L. & Bresler, Y. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 6040-6044 5 p. 7953316

Research output: ResearchConference contribution

Image denoising
Tuning
Filter banks
Analytical models
Experiments

Blind gain and phase calibration for low-dimensional or sparse signal sensing via power iteration

Li, Y., Lee, K. & Bresler, Y. Sep 1 2017 2017 12th International Conference on Sampling Theory and Applications, SampTA 2017. Institute of Electrical and Electronics Engineers Inc., p. 119-123 5 p. 8024422

Research output: ResearchConference contribution

Calibration
Sensing
Iteration
Unknown
Sparsity

Concatenated image completion via tensor augmentation and completion

Bengua, J. A., Tuan, H. D., Phien, H. N. & Do, M. N. Feb 3 2017 2016, 10th International Conference on Signal Processing and Communication Systems, ICSPCS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7843326

Research output: ResearchConference contribution

Tensors
Factorization

Depth-resolved characterization of the in vivo tympanic membrane using nano-sensitive optical coherence tomography

Dsouza, R., Won, J., Monroy, G. L., Porter, R. G., Novak, M. A., Hill, M. C. & Boppart, S. A. 2017 CLEO: Science and Innovations, CLEO_SI 2017. OSA - The Optical Society, Vol. Part F41-CLEO_SI 2017

Research output: ResearchConference contribution

Optical tomography
Membranes

Design of a nanopatterned long focal-length planar focusing collector for concentrated solar power

Ding, Q., Choubal, A. & Toussaint, K. C. 2017 Photonic and Phononic Properties of Engineered Nanostructures VII. SPIE, Vol. 10112, 101120O

Research output: ResearchConference contribution

Design
accumulators
Solar energy
Wavelength
troughs

Directed assembly of microsphere-stabilized laser arrays

Rivera, J. A., Galvin, T. C. & Eden, J. G. Jan 23 2017 2016 IEEE Photonics Conference, IPC 2016. Institute of Electrical and Electronics Engineers Inc., p. 356-357 2 p. 7831135

Research output: ResearchConference contribution

laser arrays
assembly
fabrication
Lasers
polystyrene

Enhancing resolution and contrast in second-harmonic generation microscopy using an advanced maximum likelihood estimation restoration method

Sivaguru, M., Kabir, M. M., Gartia, M. R., Biggs, D. S. C., Sivaguru, B. S., Sivaguru, V. A., Berent, Z. T., Wagoner Johnson, A. J., Fried, G. A., Liu, G. L., Sadayappan, S. & Toussaint, K. C. 2017 Multiphoton Microscopy in the Biomedical Sciences XVII. SPIE, Vol. 10069, 1006908

Research output: ResearchConference contribution

restoration
harmonic generations
microscopy
Maximum likelihood estimation
Harmonic generation

Enhancing searches for optimal trees using SIESTA

Vachaspati, P. & Warnow, T. 2017 Comparative Genomics - 15th International Workshop, RECOMB CG 2017, Proceedings. Springer Verlag, Vol. 10562 LNBI, p. 232-255 24 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10562 LNBI)

Research output: ResearchConference contribution

Trees (mathematics)
Dynamic programming
Set theory
Polynomials
Search Space

Exploring plasmonic nanoantenna arrays as a platform for biosensing

Toussaint, K. C. 2017 Biosensing and Nanomedicine X. SPIE, Vol. 10352, 1035206

Research output: ResearchConference contribution

Biosensing
Plasmonics
platforms
Nanoantennas
Sensing

FRET lasers using biotin-streptavidin bioconjugates and characteristics of fluorescent protein lasers

Rivera, J. A. & Gary Eden, J. Jan 23 2017 2016 IEEE Photonics Conference, IPC 2016. Institute of Electrical and Electronics Engineers Inc., p. 376-377 2 p. 7831144

Research output: ResearchConference contribution

biotin
proteins
lasers
Proteins
Lasers

Gene tree parsimony for incomplete gene trees

Bayzid, M. S. & Warnow, T. Aug 1 2017 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, Vol. 88, 2

Research output: ResearchConference contribution

Dynamic programming

High-speed two-photon fluorescence lifetime imaging microscopy of NADH for label-free metabolic imaging

Bower, A. J., Li, J., Chaney, E. J., Marjanovic, M. & Boppart, S. A. 2017 Optical Molecular Probes, Imaging and Drug Delivery, OMP 2017. OSA - The Optical Society, Vol. Part F63-OMP 2017

Research output: ResearchConference contribution

Labels
Microscopic examination
Photons
Fluorescence
Imaging techniques

Imaging spatially varying biomechanical properties with neural networks

Hoerig, C., Reyes, W., Fabre, L., Ghaboussi, J. & Insana, M. F. 2017 Medical Imaging 2017: Ultrasonic Imaging and Tomography. SPIE, Vol. 10139, 1013905

Research output: ResearchConference contribution

Neural networks
Imaging techniques
Elasticity Imaging Techniques
Elastic Modulus
Finite Element Analysis

Integration of linear variable filters on CMOS for compact emission and absorption sensing

Carlson, J. A., Wan, Y., Kesler, B. A., Peng, W., Al-Mulla, S. A., Su, P., Dallesasse, J. M. & Cunningham, B. T. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808414

Research output: ResearchConference contribution

Spectrometers
Fluorescence
Spectrum analyzers
Spectral resolution
Semiconductor quantum dots

Intensified surface enhanced Raman signal of a graphene monolayer on a plasmonic substrate through the use of fluidic dielectrics

Mahigir, A., Gartia, M. R., Chang, T. W., Liu, G. L. & Veronis, G. 2017 Plasmonics in Biology and Medicine XIV. SPIE, Vol. 10080, 1008005

Research output: ResearchConference contribution

Graphite
Fluidics
Raman spectroscopy
Monolayers
Substrates

Label-free tomography of strongly scattering specimens

Popescu, G. 2017 Digital Holography and Three-Dimensional Imaging, DH 2017. OSA - The Optical Society, Vol. Part F47-DH 2017

Research output: ResearchConference contribution

Tomography
Labels
Scattering
Imaging techniques
Multiple scattering

Microscale transport physics during atomic force microscopy mass spectrometry and improved sampling efficiency

Moon, H., Comi, T. J., Dunham, S. J. B., Kwon, B., Sweedler, J. V. & King, W. P. Jul 26 2017 TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems. Institute of Electrical and Electronics Engineers Inc., p. 24-27 4 p. 7993978

Research output: ResearchConference contribution

microbalances
mass spectroscopy
sampling
atomic force microscopy
physics

Optimal completion of incomplete gene trees in polynomial time using OCTAL

Christensen, S., Molloy, E. K., Vachaspati, P. & Warnow, T. Aug 1 2017 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, Vol. 88, 27

Research output: ResearchConference contribution

Polynomials

Photonic crystal coupled plasmonic hybrid nanosensors

Liu, J. N., Liu, K. K., Huang, Q., Singamaneni, S. & Cunningham, B. T. Jan 23 2017 2016 IEEE Photonics Conference, IPC 2016. Institute of Electrical and Electronics Engineers Inc., p. 198-199 2 p. 7831038

Research output: ResearchConference contribution

Nanosensors
Photonic crystals
photonics
crystals
Nanorods

Porous photonic crystal external cavity laser biosensor for drug screening

Huang, Q., Peh, J., Hergenrother, P. J. & Cunningham, B. T. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808619

Research output: ResearchConference contribution

Photonic crystals
Biosensors
Screening
Wavelength
Stimulated emission

Quantitative label-free imaging of live-cell adhesion using Photonic Crystal Enhanced Microscopy (PCEM)

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A. & Cunningham, B. T. 2017 CLEO: Science and Innovations, CLEO_SI 2017. OSA - The Optical Society, Vol. Part F41-CLEO_SI 2017

Research output: ResearchConference contribution

Cell adhesion
Photonic crystals
Labels
Microscopic examination
Imaging techniques

Quantitative multimodal 3D characterization of cellular dynamics in wounded skin

Li, J., Bower, A. J., Chaney, E. J., Marjanovic, M. & Boppart, S. A. 2017 Bio-Optics: Design and Application, BODA 2017. OSA - The Optical Society, Vol. Part F62-BODA 2017

Research output: ResearchConference contribution

Skin

Smartphone-based thin layer chromatography for the discrimination of falsified medicines

Yu, H., Le, H., Lumetta, S., Cunningham, B. T., Kaale, E. & Layloff, T. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808847

Research output: ResearchConference contribution

Smartphones
Medicine
Image processing
Ultraviolet lamps
Phosphorescence

Thermo-mechanical characterization of materials at micro/nanoscal E under bending

Elhebeary, M. & Saif, M. T. A. Feb 23 2017 2017 IEEE 30th International Conference on Micro Electro Mechanical Systems, MEMS 2017. Institute of Electrical and Electronics Engineers Inc., p. 736-739 4 p. 7863513

Research output: ResearchConference contribution

Silicon
Single crystals
single crystals
silicon
Scanning electron microscopy

Wavefront measurement using computational adaptive optics OCT

South, F. A., Liu, Y. Z., Xu, Y., Bower, A. J., Carney, P. S. & Boppart, S. A. 2017 Computational Optical Sensing and Imaging, COSI 2017. OSA - The Optical Society, Vol. Part F46-COSI 2017

Research output: ResearchConference contribution

Adaptive optics
Wavefronts
Aberrations

When sparsity meets low-rankness: Transform learning with non-local low-rank constraint for image restoration

Wen, B., Li, Y. & Bresler, Y. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 2297-2301 5 p. 7952566

Research output: ResearchConference contribution

Image reconstruction
Mathematical transformations
Image denoising
Glossaries
Image processing
2016

3D panorama reconstruction based on sitemap joining

Wang, H., Guo, Y., Do, M. N., Zhang, C. & Tu, C. May 18 2016 2016 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-May, p. 1611-1615 5 p. 7471949

Research output: ResearchConference contribution

Joining
Cameras
Trajectories
Experiments

A four class model for digital breast histopathology using high-definition Fourier transform infrared (FT-IR) spectroscopic imaging

Mittal, S., Wrobel, T. P., Leslie, L. S., Kadjacsy-Balla, A. & Bhargava, R. 2016 Medical Imaging 2016: Digital Pathology. SPIE, Vol. 9791, 979118

Research output: ResearchConference contribution

breast
Tissue
Infrared radiation
Fourier Analysis
Breast

Alkali D2 line laser optically pumped by two color free-free absorption

Mironov, A. E., Goldshlag, W. & Eden, J. G. 2016 High Energy/Average Power Lasers and Intense Beam Applications IX. SPIE, Vol. 9729, 972906

Research output: ResearchConference contribution

alkalies
color
lasers
Absorption
Laser

A new approach to ultrasonic elasticity imaging

Hoerig, C., Ghaboussi, J., Fatemi, M. & Insana, M. F. 2016 Medical Imaging 2016: Ultrasonic Imaging and Tomography. SPIE, Vol. 9790, 97900G

Research output: ResearchConference contribution

elastic properties
ultrasonics
Elasticity
Ultrasonics
Tissue

Automatic Gleason grading of prostate cancer using SLIM and machine learning

Nguyen, T. H., Sridharan, S., Marcias, V., Balla, A. K., Do, M. N. & Popescu, G. 2016 Quantitative Phase Imaging II. SPIE, Vol. 9718, 97180Y

Research output: ResearchConference contribution

Neoplasm Grading
Area Under Curve
Prostate
Prostatic Neoplasms
Machine Learning

Automatic tissue segmentation of breast biopsies imaged by QPI

Majeed, H., Nguyen, T., Kandel, M., Marcias, V., Do, M., Tangella, K., Balla, A. & Popescu, G. 2016 Quantitative Phase Imaging II. SPIE, Vol. 9718, 971817

Research output: ResearchConference contribution

breast
Biopsy
Tissue
Imaging techniques
Breast

Binary code learning with semantic ranking based supervision

Nguyen, V. A. & Do, M. May 18 2016 2016 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-May, p. 1165-1169 5 p. 7471859

Research output: ResearchConference contribution

Binary codes
Semantics

Characterization of liquid absorption and emission spectra using linear variable filters integrated with a CMOS camera

Wan, Y., Carlson, J. A., Kesler, B. A., Peng, W., Su, P., Al-Mulla, S. A., Dallesasse, J. M. & Cunningham, B. T. Dec 16 2016 2016 Conference on Lasers and Electro-Optics, CLEO 2016. Institute of Electrical and Electronics Engineers Inc., 7788359

Research output: ResearchConference contribution

CMOS
emission spectra
platforms
cameras
absorption spectra

Comparing QUS parameters to structural and functional changes in tumors during therapy

Dizeux, A., Le Guillou-Buffelo, D., Bridal, L., Comperat, E. & Oelze, M. Nov 1 2016 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November, 7728576

Research output: ResearchConference contribution

therapy
tumors
histology
fibrosis
necrosis

Computational adaptive optics of the human retina

South, F. A., Liu, Y. Z., Carney, P. S. & Boppart, S. A. 2016 Ophthalmic Technologies XXVI. SPIE, Vol. 9693, 96931F

Research output: ResearchConference contribution

Adaptive optics
Aberrations
retina
adaptive optics
aberration

Covariance based outlier detection with feature selection

Zwilling, C. E. & Wang, M. Y. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 2606-2609 4 p. 7591264

Research output: ResearchConference contribution

Feature extraction
Time series
Informatics
Health

Deep learning based supervised hashing for efficient image retrieval

Nguyen, V. A. & Do, M. N. Aug 25 2016 2016 IEEE International Conference on Multimedia and Expo, ICME 2016. IEEE Computer Society, Vol. 2016-August, 7552927

Research output: ResearchConference contribution

Binary codes
Image retrieval
Semantics
Deep learning
Image recognition

Design and analysis of soft pneumatic sleeve for ARM orthosis

Singh, G., Xiao, C., Krishnan, G. & Hsiao-Wecksler, E. 2016 40th Mechanisms and Robotics Conference. American Society of Mechanical Engineers (ASME), Vol. 5A-2016

Research output: ResearchConference contribution

Design
Enclosures
Fibers
Enclosure
Fiber

Discrete frequency infrared imaging using quantum cascade lasers for biological tissue analysis

Yeh, K. & Bhargava, R. 2016 Biomedical Vibrational Spectroscopy 2016: Advances in Research and Industry. SPIE, Vol. 9704, 970406

Research output: ResearchConference contribution

quantum cascade lasers
Quantum cascade lasers
Infrared imaging
Tissue
Imaging techniques

Early experiences porting the NAMD and VMD molecular simulation and analysis software to GPU-accelerated openPOWER platforms

Stone, J. E., Hynninen, A. P., Phillips, J. C. & Schulten, K. 2016 High Performance Computing - ISC High Performance 2016 International Workshops ExaComm, E-MuCoCoS, HPC-IODC, IXPUG, IWOPH, P^3MA, VHPC, WOPSSS, Revised Selected. Springer Verlag, Vol. 9945 LNCS, p. 188-206 19 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9945 LNCS)

Research output: ResearchConference contribution

Molecular Simulation
Software
Simulation
Experience
Molecular modeling

Electrohydrodynamic-jet deposition of Pt-based Fuel cell catalysts

Hollinger, A. S. & Kenis, P. J. A. 2016 ASME 2016 14th International Conference on Fuel Cell Science, Engineering and Technology, FUELCELL 2016, collocated with the ASME 2016 Power Conference and the ASME 2016 10th International Conference on Energy Sustainability. American Society of Mechanical Engineers

Research output: ResearchConference contribution

Fuel cells
Catalysts
Diffusion in gases
Microelectrodes
Painting

Evaluation of a wrist orthosis on lofstrand crutch-assisted gait

Farooq, D., Jahanian, O., Slavens, B. A. & Hsiao-Wecksler, E. T. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 5042-5045 4 p. 7591860

Research output: ResearchConference contribution

Crutches
Orthotic Devices
Wrist
Gait
Tunnels

Evaluation of emerging energy-efficient heterogeneous computing platforms for biomolecular and cellular simulation workloads

Stone, J. E., Hallock, M. J., Phillips, J. C., Peterson, J. R., Luthey-Schulten, Z. & Schulten, K. Jul 18 2016 Proceedings - 2016 IEEE 30th International Parallel and Distributed Processing Symposium, IPDPS 2016. Institute of Electrical and Electronics Engineers Inc., p. 89-100 12 p. 7529854

Research output: ResearchConference contribution

Energy efficiency
Hardware
Graphics processing unit
Molecular modeling
Supercomputers

Experimental ultrasonic communications through tissues at Mbps data rates

Singer, A. C., Oelze, M. & Podkowa, A. Nov 1 2016 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November, 7728490

Research output: ResearchConference contribution

ultrasonics
communication
radio frequencies
transducers
quadrature phase shift keying

Fast guided global interpolation for depth and motion

Li, Y., Min, D., Do, M. N. & Lu, J. 2016 Computer Vision - 14th European Conference, ECCV 2016, Proceedings. Springer Verlag, Vol. 9907 LNCS, p. 717-733 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9907 LNCS)

Research output: ResearchConference contribution

Interpolate
Motion
Interpolation
Guidance
Depth Map

Filtering and unwrapping doppler optical coherence tomography velocity maps

Xu, Y., Darga, D., Smid, J., Zysk, A. M., Teh, D., Boppart, S. A. & Scott Carney, P. Jul 18 2016 Computational Optical Sensing and Imaging, COSI 2016. OSA - The Optical Society

Research output: ResearchConference contribution

Optical tomography
Computational methods
Fluids

Focused ultrasound therapy of cervical lymph nodes in rats for alleviating EAE

Motl, R. J., Podkowa, A., Miller, R. J. & Oelze, M. L. Nov 1 2016 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November, 7728483

Research output: ResearchConference contribution

lymphatic system
rats
therapy
disabilities
lymphocytes