Research Output 1960 2018

Filter
Conference contribution
2017

Achieving uniformity and reproducibility for photonic crystal fluorescence enhanced disease diagnostic microarrays

Race, C. M., Kwon, L. & Cunningham, B. T. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808961

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence
Photonic crystals
Assays
Scanning
Lasers

An automated microfluidic assay for the detection of cancer biomarkers in serum using photonic crystal enhanced fluorescence

Kwon, L., Race, C., Foreman, M. & Cunningham, B. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808960

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Assays
Photonic crystals
Fluorescence
Biomarkers
Microfluidics

Automatic parameter tuning for image denoising with learned sparsifying transforms

Pfister, L. & Bresler, Y. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 6040-6044 5 p. 7953316

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image denoising
Tuning
Filter banks
Analytical models
Experiments

Concatenated image completion via tensor augmentation and completion

Bengua, J. A., Tuan, H. D., Phien, H. N. & Do, M. N. Feb 3 2017 2016, 10th International Conference on Signal Processing and Communication Systems, ICSPCS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7843326

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tensors
Color
Recovery
Factorization

Depth-resolved characterization of the in vivo tympanic membrane using nano-sensitive optical coherence tomography

Dsouza, R., Won, J., Monroy, G. L., Porter, R. G., Novak, M. A., Hill, M. C. & Boppart, S. A. 2017 CLEO: Science and Innovations, CLEO_SI 2017. OSA - The Optical Society, Vol. Part F41-CLEO_SI 2017

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oral Submucous Fibrosis
Optical tomography
Bronchiolo-Alveolar Adenocarcinoma
Membranes

Design of a nanopatterned long focal-length planar focusing collector for concentrated solar power

Ding, Q., Choubal, A. & Toussaint, K. C. 2017 Photonic and Phononic Properties of Engineered Nanostructures VII. SPIE, Vol. 10112, 101120O

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Complement C5
accumulators
Pharmacy and Therapeutics Committee
Solar energy
Acyclic Acids

Enhancing resolution and contrast in second-harmonic generation microscopy using an advanced maximum likelihood estimation restoration method

Sivaguru, M., Kabir, M. M., Gartia, M. R., Biggs, D. S. C., Sivaguru, B. S., Sivaguru, V. A., Berent, Z. T., Wagoner Johnson, A. J., Fried, G. A., Liu, G. L., Sadayappan, S. & Toussaint, K. C. 2017 Multiphoton Microscopy in the Biomedical Sciences XVII. SPIE, Vol. 10069, 1006908

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Jaw
Harmonic generation
harmonic generations
Microscopy
spatial resolution

Gene tree parsimony for incomplete gene trees

Bayzid, M. S. & Warnow, T. Aug 1 2017 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, Vol. 88, 2

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Sampling
Dynamic programming

Imaging spatially varying biomechanical properties with neural networks

Hoerig, C., Reyes, W., Fabre, L., Ghaboussi, J. & Insana, M. F. 2017 Medical Imaging 2017: Ultrasonic Imaging and Tomography. SPIE, Vol. 10139, 1013905

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Benzo(a)pyrene
Neural networks
Elasticity Imaging Techniques
Elastic Modulus
Edema Disease of Swine

Integration of linear variable filters on CMOS for compact emission and absorption sensing

Carlson, J. A., Wan, Y., Kesler, B. A., Peng, W., Al-Mulla, S. A., Su, P., Dallesasse, J. M. & Cunningham, B. T. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808414

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spectrometers
Fluorescence
Spectrum analyzers
Spectral resolution
Chlorine

Intensified surface enhanced Raman signal of a graphene monolayer on a plasmonic substrate through the use of fluidic dielectrics

Mahigir, A., Gartia, M. R., Chang, T. W., Liu, G. L. & Veronis, G. 2017 Plasmonics in Biology and Medicine XIV. SPIE, Vol. 10080, 1008005

Research output: Chapter in Book/Report/Conference proceedingConference contribution

graphene
Edema Disease of Swine
Graphene
Graphite
Raman Spectrum Analysis

Label-free tomography of strongly scattering specimens

Popescu, G. 2017 Digital Holography and Three-Dimensional Imaging, DH 2017. OSA - The Optical Society, Vol. Part F47-DH 2017

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Adenofibroma
Imaging techniques
Guanylthiourea
Labels
Multiple scattering

Microscale transport physics during atomic force microscopy mass spectrometry and improved sampling efficiency

Moon, H., Comi, T. J., Dunham, S. J. B., Kwon, B., Sweedler, J. V. & King, W. P. Jul 26 2017 TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems. Institute of Electrical and Electronics Engineers Inc., p. 24-27 4 p. 7993978

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fusobacterium
sampling
atomic force microscopy
Biopharmaceutics
Beta-Globulins

Optimal completion of incomplete gene trees in polynomial time using OCTAL

Christensen, S., Molloy, E. K., Vachaspati, P. & Warnow, T. Aug 1 2017 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, Vol. 88, 27

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Binary trees
Polynomials

Photonic crystal coupled plasmonic hybrid nanosensors

Liu, J. N., Liu, K. K., Huang, Q., Singamaneni, S. & Cunningham, B. T. Jan 23 2017 2016 IEEE Photonics Conference, IPC 2016. Institute of Electrical and Electronics Engineers Inc., p. 198-199 2 p. 7831038

Research output: Chapter in Book/Report/Conference proceedingConference contribution

photonics
crystals
Photonic crystals
nanorods
Q factors

Porous photonic crystal external cavity laser biosensor for drug screening

Huang, Q., Peh, J., Hergenrother, P. J. & Cunningham, B. T. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808619

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photonic crystals
Biosensors
Laser resonators
Wavelength
Stimulated emission

Quantitative label-free imaging of live-cell adhesion using Photonic Crystal Enhanced Microscopy (PCEM)

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A. & Cunningham, B. T. 2017 CLEO: Science and Innovations, CLEO_SI 2017. OSA - The Optical Society, Vol. Part F41-CLEO_SI 2017

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photonic crystals
Biophysics
Cell adhesion
Microscopic examination
Enzyme Reactivators

Smartphone-based thin layer chromatography for the discrimination of falsified medicines

Yu, H., Le, H., Lumetta, S., Cunningham, B. T., Kaale, E. & Layloff, T. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808847

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Thin layer chromatography
Smartphones
Medicine
Image processing
Densitometers

Wavefront measurement using computational adaptive optics OCT

South, F. A., Liu, Y. Z., Xu, Y., Bower, A. J., Carney, P. S. & Boppart, S. A. 2017 Computational Optical Sensing and Imaging, COSI 2017. OSA - The Optical Society, Vol. Part F46-COSI 2017

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dental Abutments
Buccal Administration
Experimental Melanomas
Wavefronts
Aberrations

When sparsity meets low-rankness: Transform learning with non-local low-rank constraint for image restoration

Wen, B., Li, Y. & Bresler, Y. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 2297-2301 5 p. 7952566

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image reconstruction
Image denoising
Glossaries
Image processing
2016

3D panorama reconstruction based on sitemap joining

Wang, H., Guo, Y., Do, M. N., Zhang, C. & Tu, C. May 18 2016 2016 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-May, p. 1611-1615 5 p. 7471949

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Joining
Cameras
Trajectories
Experiments

A four class model for digital breast histopathology using high-definition Fourier transform infrared (FT-IR) spectroscopic imaging

Mittal, S., Wrobel, T. P., Leslie, L. S., Kadjacsy-Balla, A. & Bhargava, R. 2016 Medical Imaging 2016: Digital Pathology. SPIE, Vol. 9791, 979118

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Library Catalogs
Adenofibroma
Histocompatibility
Airway Obstruction
Biological Availability

A new approach to ultrasonic elasticity imaging

Hoerig, C., Ghaboussi, J., Fatemi, M. & Insana, M. F. 2016 Medical Imaging 2016: Ultrasonic Imaging and Tomography. SPIE, Vol. 9790, 97900G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Library Catalogs
Tissue
Elasticity
Ultrasonography
Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing)

Automatic Gleason grading of prostate cancer using SLIM and machine learning

Nguyen, T. H., Sridharan, S., Marcias, V., Balla, A. K., Do, M. N. & Popescu, G. 2016 Quantitative Phase Imaging II. SPIE, Vol. 9718, 97180Y

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Neoplasm Grading
Artificial Intelligence
Area Under Curve
Prostate
Prostatic Neoplasms

Automatic tissue segmentation of breast biopsies imaged by QPI

Majeed, H., Nguyen, T., Kandel, M., Marcias, V., Do, M., Tangella, K., Balla, A. & Popescu, G. 2016 Quantitative Phase Imaging II. SPIE, Vol. 9718, 971817

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Library Catalogs
Tissue
Breast
Biopsy
Pectoralis Muscles

Binary code learning with semantic ranking based supervision

Nguyen, V. A. & Do, M. May 18 2016 2016 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-May, p. 1165-1169 5 p. 7471859

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Binary codes
Semantics
Hash functions
Data structures

Comparing QUS parameters to structural and functional changes in tumors during therapy

Dizeux, A., Le Guillou-Buffelo, D., Bridal, L., Comperat, E. & Oelze, M. Nov 1 2016 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November, 7728576

Research output: Chapter in Book/Report/Conference proceedingConference contribution

therapy
tumors
histology
fibrosis
necrosis

Computational adaptive optics of the human retina

South, F. A., Liu, Y. Z., Carney, P. S. & Boppart, S. A. 2016 Ophthalmic Technologies XXVI. SPIE, Vol. 9693, 96931F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Achromobacter
Adaptive optics
adaptive optics
Retina
Dental Abutments

Covariance based outlier detection with feature selection

Zwilling, C. E. & Wang, M. Y. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 2606-2609 4 p. 7591264

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Feature extraction
Time series
Health

Deep learning based supervised hashing for efficient image retrieval

Nguyen, V. A. & Do, M. N. Aug 25 2016 2016 IEEE International Conference on Multimedia and Expo, ICME 2016. IEEE Computer Society, Vol. 2016-August, 7552927

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Binary codes
Image retrieval
Semantics
Image recognition
Neural networks

Design and analysis of soft pneumatic sleeve for ARM orthosis

Singh, G., Xiao, C., Krishnan, G. & Hsiao-Wecksler, E. 2016 40th Mechanisms and Robotics Conference. American Society of Mechanical Engineers (ASME), Vol. 5A-2016

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Enclosures
Fibers
Enclosure
Fiber
Model

Discrete frequency infrared imaging using quantum cascade lasers for biological tissue analysis

Yeh, K. & Bhargava, R. 2016 Biomedical Vibrational Spectroscopy 2016: Advances in Research and Industry. SPIE, Vol. 9704, 970406

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Library Catalogs
Adenofibroma
Tissue
Imaging techniques
Semiconductor Lasers

Early experiences porting the NAMD and VMD molecular simulation and analysis software to GPU-accelerated openPOWER platforms

Stone, J. E., Hynninen, A. P., Phillips, J. C. & Schulten, K. 2016 High Performance Computing - ISC High Performance 2016 International Workshops ExaComm, E-MuCoCoS, HPC-IODC, IXPUG, IWOPH, P^3MA, VHPC, WOPSSS, Revised Selected. Springer Verlag, Vol. 9945 LNCS, p. 188-206 19 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9945 LNCS)

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Molecular modeling
Molecular dynamics
Visualization
Hardware
Computer simulation

Electrohydrodynamic-jet deposition of Pt-based Fuel cell catalysts

Hollinger, A. S. & Kenis, P. J. A. 2016 ASME 2016 14th International Conference on Fuel Cell Science, Engineering and Technology, FUELCELL 2016, collocated with the ASME 2016 Power Conference and the ASME 2016 10th International Conference on Energy Sustainability. American Society of Mechanical Engineers

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Catalysts
Electrodes
Electrohydrodynamics
Fuel cells
Diffusion in gases

Evaluation of a wrist orthosis on lofstrand crutch-assisted gait

Farooq, D., Jahanian, O., Slavens, B. A. & Hsiao-Wecksler, E. T. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 5042-5045 4 p. 7591860

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Crutches
Orthotic Devices
Wrist
Gait
Tunnels

Evaluation of emerging energy-efficient heterogeneous computing platforms for biomolecular and cellular simulation workloads

Stone, J. E., Hallock, M. J., Phillips, J. C., Peterson, J. R., Luthey-Schulten, Z. & Schulten, K. Jul 18 2016 Proceedings - 2016 IEEE 30th International Parallel and Distributed Processing Symposium, IPDPS 2016. Institute of Electrical and Electronics Engineers Inc., p. 89-100 12 p. 7529854

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Energy efficiency
Visualization
Hardware
Molecular modeling
Mobile computing

Experimental ultrasonic communications through tissues at Mbps data rates

Singer, A. C., Oelze, M. & Podkowa, A. Nov 1 2016 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November, 7728490

Research output: Chapter in Book/Report/Conference proceedingConference contribution

communication
ultrasonics
radio frequencies
transducers
quadrature phase shift keying

Fast guided global interpolation for depth and motion

Li, Y., Min, D., Do, M. N. & Lu, J. 2016 Computer Vision - 14th European Conference, ECCV 2016, Proceedings. Springer Verlag, Vol. 9907 LNCS, p. 717-733 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9907 LNCS)

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Interpolate
Interpolation
Motion
Guidance
Depth map

Filtering and unwrapping doppler optical coherence tomography velocity maps

Xu, Y., Darga, D., Smid, J., Zysk, A. M., Teh, D., Boppart, S. A. & Scott Carney, P. Jul 18 2016 Computational Optical Sensing and Imaging, COSI 2016. OSA - The Optical Society

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Acetyl-CoA Hydrolase
Midodrine
Oral Submucous Fibrosis
Anaplasmosis
Optical tomography

Focused ultrasound therapy of cervical lymph nodes in rats for alleviating EAE

Motl, R. J., Podkowa, A., Miller, R. J. & Oelze, M. L. Nov 1 2016 2016 IEEE International Ultrasonics Symposium, IUS 2016. IEEE Computer Society, Vol. 2016-November, 7728483

Research output: Chapter in Book/Report/Conference proceedingConference contribution

rats
lymphatic system
therapy
disabilities
lymphocytes

High-definition Fourier transform infrared spectroscopic imaging of prostate tissue

Wrobel, T. P., Kwak, J. T., Kadjacsy-Balla, A. & Bhargava, R. 2016 Medical Imaging 2016: Digital Pathology. SPIE, Vol. 9791, 97911D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dermatoglyphics
Fourier Analysis
Prostate
Coloring Agents
Pathology

Highly sensitive kinesin-microtubule motility assays using SLIM

Kandel, M., Teng, K. W., Selvin, P. R. & Popescu, G. 2016 Quantitative Phase Imaging II. SPIE, Vol. 9718, 97180T

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Light interference
Microscopic examination
Imaging techniques
Adenofibroma
Biophysics

High performance molecular visualization: In-situ and parallel rendering with EGL

Stone, J. E., Messmer, P., Sisneros, R. & Schulten, K. Jul 18 2016 Proceedings - 2016 IEEE 30th International Parallel and Distributed Processing Symposium, IPDPS 2016. Institute of Electrical and Electronics Engineers Inc., p. 1014-1023 10 p. 7529973

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Visualization
Embedded systems
Supercomputers
HPSS
Computer operating systems

HIV-1 IIIB capture from whole blood on magnetic microparticles

Damhorst, G. L., Kooiman, J. M. & Bashir, R. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 5785-5788 4 p. 7592042

Research output: Chapter in Book/Report/Conference proceedingConference contribution

HIV-1
HIV
Antibodies
Proteins
Drug therapy

Identification and engineering of n-butanol biosensors by transcriptome analysis in yeast

Shi, S., Ang, E. L., Tan, M. H. & Zhao, H. 2016 Metabolic Engineering 11. AIChE, p. 458-459 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Immersive molecular visualization with omnidirectional stereoscopic ray tracing and remote rendering

Stone, J. E., Sherman, W. R. & Schulten, K. Jul 18 2016 Proceedings - 2016 IEEE 30th International Parallel and Distributed Processing Symposium, IPDPS 2016. Institute of Electrical and Electronics Engineers Inc., p. 1048-1057 10 p. 7529978

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Visualization
Ray tracing
Display devices
Rendering (computer graphics)
Supercomputers

Imperceptible sensorics for medical monitoring

Meyer, M., Van Binh, N., Calero, V., Baraban, L., Cuniberti, G. & Rogers, J. A. Jan 20 2016 IEEE-NANO 2015 - 15th International Conference on Nanotechnology. Institute of Electrical and Electronics Engineers Inc., p. 1309-1312 4 p. 7388873

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Antimony Potassium Tartrate
Jejunoileal Bypass
Health
Monitoring
Picrates

Implementing a challenge-inspired undergraduate experience

Pool, M., Bhargava, R., Carney, P. S., Pan, D. & Smith, A. M. Jun 26 2016 2016 ASEE Annual Conference and Exposition. American Society for Engineering Education, Vol. 2016-June

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Improving face detection with depth

Meyer, G. P., Alfano, S. & Do, M. N. May 18 2016 2016 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-May, p. 1288-1292 5 p. 7471884

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Face recognition
Detectors
Cameras
Color
Computer vision

Intraoperative in vivo assessment of lymph nodes with optical coherence tomography

Marjanovic, M., Nolan, R. M., Erickson-Bhatt, S. J., Adie, S. G., Chaney, E. J., South, F. A., Monroy, G. L., Shemonski, N. D., Shelton, R. L., Bower, A. J., Simpson, D. G., Ray, P. S., Cradock, K. A., Liu, Z. G. & Boppart, S. A. Apr 18 2016 Clinical and Translational Biophotonics, Translational 2016. OSA - The Optical Society

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oral Submucous Fibrosis
Supravalvular Aortic Stenosis
Cefazolin
Histology
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