Research Output 1970 2019

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Conference contribution
2019

A 27-band snapshot hyperspectral imaging system for label-free tumor detection during image-guided surgery

Blair, S., Garcia, M., Konopka, C., Dobrucki, W. & Gruev, V., Jan 1 2019, Label-Free Biomedical Imaging and Sensing, LBIS 2019. Hayden, O. & Shaked, N. T. (eds.). SPIE, 108900G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10890).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer-Assisted Surgery
surgery
Imaging systems
Surgery
Labels

Anodized/etched and dis treated ti surfaces to promote bone formation

Mesa, A., Montes, R., Patiño, E., Alzate, J. F., Civantos, A., Balcázar, N., Pavón, J. J. & Allain, J. P., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Osteogenesis
Bone Morphogenetic Protein 2
Bone
Titanium
Hazardous Waste

Biomimetic triphasic scaffolds for osteotendinous junction regeneration

Sun Han Chang, R. A., Lee, C. W., Rogers, S. & Harley, B. A., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomimetics
Tendons
Scaffolds (biology)
Regeneration
Hydrogel

Developing a spatially-defined biomaterial model of the glioblastoma perivascular niche

Hunter, C., Ngo, M. & Harley, B. A., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biocompatible Materials
Glioblastoma
Biomaterials
Tumors
Cells

Development of a biomaterial model of the decidualized endometrium

Zambuto, S. G. & Harley, B. A., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biocompatible Materials
Endometrium
Biomaterials
Hydrogel
Stromal Cells

Dissecting the influences of combinatorial microenvironments on hepatic stellate cell phenotype and behavior

Jain, I., Brougham-Cook, A., Kukla, D., Khetani, S. & Underhill, G. H., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hepatic Stellate Cells
Phenotype
Liver
Fibrosis
Mechanical Phenomena

Electroconductive oxide ceramics with graphene-encapsulated fillers

Hussainova, I., Drozdova, M., Ivanov, R., Kale, S. & Jasiuk, I. M., Jan 1 2019, Ceramic Engineering and Science Proceedings. Mechnich, P., Koch, D., Kusnezoff, M., LaSalvia, J., Salem, J., Balaya, P., Fu, Z., Bansal, N. & Ohji, T. (eds.). 2 ed. American Ceramic Society, p. 251-258 8 p. (Ceramic Engineering and Science Proceedings; vol. 39, no. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Graphite
Aluminum Oxide
Oxides
Graphene
Fillers

Evaluation of immune response of macrophages using bioactive nanotopography surfaces on titanium alloy (Ti6al4v) designed by directed irradiation synthesis

Civantos, A., Restrepo, A. M., Jaramillo, C., Barnwell, A., Shetty, A. & Allain, J. P., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Macrophages
Titanium
Titanium alloys
Irradiation
Phenotype

Exploiting biomaterial-modulated secretome production in artificial stem cell niches

Gilchrist, A. & Harley, B. A., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Artificial Cells
Stem Cell Niche
Biocompatible Materials
Hematopoietic Stem Cells
Stem cells

Gelatin-based thiol/disulfide degradable hydrogels to encapsulate cells

Serrano, J. F., Gilchrist, A. E., García, A. J. & Harley, B. A., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stem Cell Niche
Hydrogels
Gelatin
Stem cells
Sulfhydryl Compounds

Multichannel Sparse Blind Deconvolution on the Sphere

Li, Y. & Bresler, Y., May 1 2019, 2019 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 7943-7947 5 p. 8683334. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2019-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deconvolution
Convolution
Recovery
Experiments

Nano-patterned bacterial cellulose hydrogel exhibits bactericidal activity against e. Coli and k. pneumoniae

Arias, S. L., Cheng, M. K., Civantos, A., Devorkin, J., Jaramillo, C. & Allain, J. P., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hydrogel
Hydrogels
Cellulose
Pneumonia
Bacteria

Nanoscale imaging of biological samples with responsivity corrected atomic force microscopy-infrared (AFM-IR) spectroscopy

Kenkel, S. & Bhargava, R., Jan 1 2019, Nanoscale Imaging, Sensing, and Actuation for Biomedical Applications XVI. Nicolau, D. V., Fixler, D. & Goldys, E. M. (eds.). SPIE, 108910A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10891).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atomic Force Microscopy
Infrared spectroscopy
Atomic force microscopy
Spectrum Analysis
infrared spectroscopy

New Divide-and-Conquer Techniques for Large-Scale Phylogenetic Estimation

Warnow, T., Jan 1 2019, Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings. Vega-Rodríguez, M. A., Holmes, I. & Martín-Vide, C. (eds.). Springer-Verlag, p. 3-21 19 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Divide and conquer
Phylogenetics
Scalability
Subset
Large Data Sets

Patient derived glioblastoma cells activate microglia in a three-dimensional gelatin hydrogel

Chen, J. W. E., Lumibao, J., Gaskins, H. R. & Harley, B. A., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hydrogel
Microglia
Gelatin
Glioblastoma
Hydrogels

Sequestration of biomolecules for controlled delivery in mineralized collagen scaffolds

Tiffany, A. & Harley, B. A., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomolecules
Scaffolds (biology)
Collagen
Bone
Bone and Bones

Tailoring gelation and mechanical properties of fibrin-based extracellular matrix using stimulus-responsive poly(Lactic-co-glycolic acid) microgelator

Hong, Y. T. & Kong, H. J., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tissue regeneration
Gelation
Fibrin
Thrombin
Extracellular Matrix

The addition of the amniotic membrane to mineralized collagen scaffolds for immunomodulatory bone regeneration

Dewey, M. J., Johnson, E. M., Slater, S. & Harley, B. A., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bone Regeneration
Amnion
Scaffolds (biology)
Collagen
Scaffolds

The Structure of Change: A Content Analysis of Engineering Diversity Plans and Mission Statements

Cross, K. J., Lee, W. C., Gaskins, W. B. & Jones, B. P., Mar 4 2019, Frontiers in Education: Fostering Innovation Through Diversity, FIE 2018 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., 8659051. (Proceedings - Frontiers in Education Conference, FIE; vol. 2018-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Engineering education
content analysis
engineering
coding
education

Using INC Within Divide-and-Conquer Phylogeny Estimation

Le, T., Sy, A., Molloy, E. K., Zhang, Q. R., Rao, S. & Warnow, T., Jan 1 2019, Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings. Vega-Rodríguez, M. A., Holmes, I. & Martín-Vide, C. (eds.). Springer-Verlag, p. 167-178 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Phylogeny
Divide and conquer
Maximum likelihood
Molecular biology
Maximum Likelihood
2018

Agile optoelectronic fiber sources for hyperspectral chemical sensing from SWIR to LWIR

Kang, I., Grant, A., Dinu, M., Jaques, J., Pfister, L., Bhargava, R. & Carney, P. S., Jan 1 2018, Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XXIV. Messinger, D. W. & Velez-Reyes, M. (eds.). SPIE, 106441E. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 10644).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optoelectronics
Optoelectronic devices
Sensing
Infrared
Fiber

A metasurface-inspired focusing collector for concentrated solar power applications

Ding, Q., Barna, S., Jacobs, K., Choubal, A., Mensing, G., Zhang, Z., Yamada, K., Tirawat, R., Kincaid, N., Zhu, G., Wendelin, T., Guo, L. J., Ferreira, P. M. & Toussaint, K. C., Jan 1 2018, Frontiers in Optics, FIO 2018. OSA - The Optical Society, Vol. Part F114-FIO 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nanoimprint lithography
Solar energy
Lithography
Scalability
Photons

Analysis of the Accuracy and Precision of the Least Square Fitting Method for Simultaneous Estimation of Backscatter and Attenuation Coefficients

Polack, J., Coila, A., Oelze, M. L. & Lavarello, R., Dec 17 2018, 2018 IEEE International Ultrasonics Symposium, IUS 2018. IEEE Computer Society, 8579746. (IEEE International Ultrasonics Symposium, IUS; vol. 2018-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

attenuation coefficients
coefficients
attenuation
estimates
slopes

Are Profile Hidden Markov Models Identifiable?

Pattabiraman, S. & Warnow, T., Aug 15 2018, ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 448-456 9 p. (ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hidden Markov models
Computational Biology
Sequence Alignment
Statistical Models
Bioinformatics

Augmented Joint Stiffness and Actuation Using Architectures of Soft Pneumatic Actuators

Thompson, N., Zhang, X., Ayala, F., Hsiao-Wecksler, E. T. & Krishnan, G., Sep 10 2018, 2018 IEEE International Conference on Robotics and Automation, ICRA 2018. Institute of Electrical and Electronics Engineers Inc., p. 1533-1538 6 p. 8460746. (Proceedings - IEEE International Conference on Robotics and Automation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pneumatic actuators
Linear actuators
Actuators
Stiffness
Robotics

Characterization of a reflective objective with multiphoton microscopy

Kabir, M. M., Choubal, A. M., Sivaguru, M. & Toussaint, K. C., Jan 1 2018, Multiphoton Microscopy in the Biomedical Sciences XVIII. Periasamy, A., Xie, X. S., Xie, X. S., Konig, K. & So, P. T. C. (eds.). SPIE, 104982Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10498).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

numerical aperture
Harmonic generation
Photons
Glass
Microscopy

Correlating cellular features with gene expression using CCA

Subramanian, V., Chidester, B., Ma, J. & Do, M. N., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 805-808 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene expression
Genes
Gene Expression
Cell Nucleus Shape
Neoplasms

Entity set search of scientific literature: An unsupervised ranking approach

Shen, J., Xiao, J., He, X., Shang, J., Sinha, S. & Han, J., Jun 27 2018, 41st International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR 2018. Association for Computing Machinery, Inc, p. 565-574 10 p. (41st International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Agglomeration
Semantics
Experiments
Genomics

Experimental demonstration of an optical-coherence converter

Okoro, C., Kondacki, H. E., Abouraddy, A. F. & Toussaint, K. C., Aug 6 2018, 2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8426817

Research output: Chapter in Book/Report/Conference proceedingConference contribution

converters
Demonstrations
degrees of freedom
resources
Polarization

Experimental demonstration of an optical-coherence converter

Okoro, C., Kondacki, H. E., Abouraddy, A. F. & Toussaint, K. C., Jan 1 2018, CLEO: QELS_Fundamental Science, CLEO_QELS 2018. OSA - The Optical Society, Vol. Part F93-CLEO_QELS 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Demonstrations
Polarization

Feature-less Stitching of Cylindrical Tunnel

Pahwa, R. S., Kiat Leong, W., Foong, S., Leman, K. & Do, M. N., Sep 14 2018, Proceedings - 17th IEEE/ACIS International Conference on Computer and Information Science, ICIS 2018. Xiong, W., Shang, W., Xu, S. & Lee, H-K. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 502-507 6 p. 8466434

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tunnels
Cameras
Unmanned aerial vehicles (UAV)
Trajectories
Engines

Image Restoration with Deep Generative Models

Yeh, R. A., Lim, T. Y., Chen, C., Schwing, A. G., Hasegawa-Johnson, M. A. & Do, M. N., Sep 10 2018, 2018 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 6772-6776 5 p. 8462317. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image reconstruction

Improved cross-coupled iterative learning control for contouring NURBS curves

Armstrong, A., Wagoner Johnson, A. J. & Alleyne, A. G., Jan 1 2018, Control and Optimization of Connected and Automated Ground Vehicles; Dynamic Systems and Control Education; Dynamics and Control of Renewable Energy Systems; Energy Harvesting; Energy Systems; Estimation and Identification; Intelligent Transportation and Vehicles; Manufacturing; Mechatronics; Modeling and Control of IC Engines and Aftertreatment Systems; Modeling and Control of IC Engines and Powertrain Systems; Modeling and Management of Power Systems. American Society of Mechanical Engineers (ASME), Vol. 2.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3D printers
Trajectories
Electric current control
Computer aided design
Control systems

In Situ Calibration to Account for Transmission Losses in Backscatter Coefficient Estimation

Nguyen, T., Tam, A. & Oelze, M. L., Dec 17 2018, 2018 IEEE International Ultrasonics Symposium, IUS 2018. IEEE Computer Society, 8580156. (IEEE International Ultrasonics Symposium, IUS; vol. 2018-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

transmission loss
coefficients
estimates
scattering
encounters

Integration of spatial distribution in imaging-genetics

Subramanian, V., Tang, W., Chidester, B., Ma, J. & Do, M. N., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Fichtinger, G., Davatzikos, C., Alberola-López, C., Frangi, A. F. & Schnabel, J. A. (eds.). Springer-Verlag, p. 245-253 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11071 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spatial Distribution
Gene expression
Spatial distribution
Imaging
Statistics

Microlens-stabilized laser arrays for short-pulse, speckle-free imaging

Steinforth, A. W., Rivera, J. A. & Eden, J. G., Jan 1 2018, CLEO: Applications and Technology, CLEO_AT 2018. OSA - The Optical Society, Vol. Part F92-CLEO_AT 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Speckle
Laser pulses
Imaging techniques
Lasers
Liquids

Microlens-Stabilized Laser Arrays for Short-Pulse, Speckle-Free Imaging

Steinforth, A. W., Rivera, J. A. & Eden, J. G., Aug 6 2018, 2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8426360

Research output: Chapter in Book/Report/Conference proceedingConference contribution

laser arrays
Speckle
Laser pulses
solid state
Imaging techniques

Mobile biosensing using the sensing capabilities of smartphone cameras

Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., Ganguli, A., Lumetta, S. & Bashir, R., Jan 4 2018, 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Smartphones
Image processing
Cameras
cameras
Health

Multi-Segment Reconstruction Using Invariant Features

Zehni, M., Do, M. N. & Zhao, Z., Sep 10 2018, 2018 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 4629-4633 5 p. 8461796. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DNA sequences
Recovery

Nanoantenna-microcavity hybrid resonators with highly cooperative plasmonic-photonic coupling

Liu, J. N., Huang, Q., Liu, K. K., Singamaneni, S. & Cunningham, B. T., Feb 5 2018, 2017 IEEE Photonics Conference (IPC) Part II. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 1-2 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Microcavities
Photonic crystals
acceleration (physics)
Nanorods
Gold

New absolute fast converging phylogeny estimation methods with improved scalability and accuracy

Zhang, Q., Rao, S. & Warnow, T., Aug 1 2018, 18th International Workshop on Algorithms in Bioinformatics, WABI 2018. Parida, L. & Ukkonen, E. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 8. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 113).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Scalability
Joining
Polynomials
Trees (mathematics)
Maximum likelihood

NJMerge: A Generic technique for scaling phylogeny estimation methods and its application to species trees

Molloy, E. K. & Warnow, T., Jan 1 2018, Comparative Genomics - 16th International Conference, RECOMB-CG 2018, Proceedings. Ouangraoua, A. & Blanchette, M. (eds.). Springer-Verlag, p. 260-276 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11183 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Phylogeny
Scaling
Scalability
Subset
Divide and conquer

Optical parametric amplification of gated confocal reflectance microscopy signals in scattering media

Sun, Y., Tu, H., You, S. & Boppart, S. A., Jan 1 2018, Frontiers in Optics, FIO 2018. OSA - The Optical Society, Vol. Part F114-FIO 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Amplification
Microscopic examination
Photons
Scattering
Imaging techniques

Photonic crystal resonant coupling to nanoantennas and applications for digital resolution biosensing

Cunningham, B. T., Liu, J. N., Huang, Q., Canady, T., Long, K. D., Li, N., Pastor, M. A., Kwon, L., Liu, K. K. & Singamaneni, S., Jan 1 2018, Microscopy Histopathology and Analytics, MICROSCOPY 2018. OSA - The Optical Society, Vol. Part F89-MICROSCOPY 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photonic crystals
Biomarkers
Pathogens
Tumor Biomarkers
MicroRNAs

Photonic resonator outcoupler microscopy (PROM) for quantitative monitoring of stem cell focal adhesion area

Zhuo, Y., Choi, J. S., Marin, T., Yu, H., Harley, B. A. & Cunningham, B. T., Jan 1 2018, Frontiers in Optics, FIO 2018. OSA - The Optical Society, Vol. Part F114-FIO 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stem cells
Photonics
Resonators
Microscopic examination
Adhesion

Quantitative second-harmonic generation imaging of tissue damage from environmental-scanning electron microscopy

Lee, W. & Toussaint, K. C., Jan 1 2018, Frontiers in Optics, FIO 2018. OSA - The Optical Society, Vol. Part F114-FIO 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Harmonic generation
Microscopic examination
Electron microscopes
Tissue
Scanning

Real-time 3D face verification with a consumer depth camera

Meyer, G. & Do, M. N., Dec 13 2018, Proceedings - 2018 15th Conference on Computer and Robot Vision, CRV 2018. Institute of Electrical and Electronics Engineers Inc., p. 71-79 9 p. 8575738. (Proceedings - 2018 15th Conference on Computer and Robot Vision, CRV 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cameras
Classifiers
Wear of materials
Sensors

Resonant coupling from photonic crystal surfaces to plasmonic nanoantennas: Principles, detection instruments, and applications in digital resolution biosensing

Liu, J. N., Huang, Q., Liu, K. K., Singamaneni, S. & Cunningham, B. T., Jan 1 2018, Smart Photonic and Optoelectronic Integrated Circuits XX. He, S., Lee, E-H. & He, S. (eds.). SPIE, Vol. 10536. 105361O

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biosensing
Plasmonics
Biomolecules
Photonic crystals
Photonic Crystal

Sensitivity Analysis of Reference-Free Quantitative Ultrasound Tissue Classification

Nguyen, T., Do, M. N. & Oelze, M. L., Dec 17 2018, 2018 IEEE International Ultrasonics Symposium, IUS 2018. IEEE Computer Society, 8579885. (IEEE International Ultrasonics Symposium, IUS; vol. 2018-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

sensitivity analysis
rabbits
fats
liver
diets

SHREC'18: RgB-D object-to-cad retrieval

Pham, Q. H., Tran, M. K., Li, W., Xiang, S., Zhou, H., Nie, W., Liu, A., Su, Y., Tran, M. T., Bui, N. M., Do, T. L., Ninh, T. V., Le, T. K., Dao, A. V., Nguyen, V. T., Do, M. N., Duong, A. D., Hua, B. S., Yu, L. F., Nguyen, D. T. & 1 others, Yeung, S. K., Jan 1 2018, EG 3DOR 2018 - Eurographics Workshop on 3D Object Retrieval. Eurographics Association, p. 45-52 8 p. (Eurographics Workshop on 3D Object Retrieval, EG 3DOR; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer aided design
Sensors
Deep learning