Research Output 1960 2018

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2017

Electrokinetic Transport and Fluidic Manipulation in Three Dimensional Integrated Nanofluidic Networks

King, T. L., Jin, X., Nandigana, V. R., Aluru, N. & Bohn, P. W. 2017 Nanofluidics, 2nd Edition. 41 ed. Royal Society of Chemistry, Vol. 2017-January, p. 37-75 39 p. (RSC Nanoscience and Nanotechnology; vol. 2017-January, no. 41)

Research output: Chapter in Book/Report/Conference proceedingChapter

Niclofolan
Nanofluidics
fluidics
Fluidics
Blood Flow Velocity

Hydrothermal liquefaction (HTL): A promising pathway for biorefinery of algae

Tian, C., Liu, Z. & Zhang, Y. Jan 1 2017 Algal Biofuels: Recent Advances and Future Prospects. Springer International Publishing, p. 361-392 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Qflow cytometry-based receptoromic screening: A high-throughput quantification approach informing biomarker selection and nanosensor development

Chen, S., Weddell, J., Gupta, P., Conard, G., Parkin, J. & Imoukhuede, P. I. 2017 Methods in Molecular Biology. Humana Press Inc., Vol. 1570, p. 117-138 22 p. (Methods in Molecular Biology; vol. 1570)

Research output: Chapter in Book/Report/Conference proceedingChapter

Biological Markers
Immunohistochemistry
Calibration
Vascular Endothelial Growth Factor Receptor
Antibody Specificity

Strain development by whole-cell directed evolution

Si, T., Lian, J. & Zhao, H. Jan 1 2017 Directed Enzyme Evolution: Advances and Applications. Springer International Publishing, p. 173-200 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phenotype
Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing)
Workflow
Mutation
Acromion

“Dipstick” colorimetric detection of metal ions based on immobilization of DNAzyme and gold nanoparticles onto a lateral flow device

Mazumdar, D., Lan, T. & Lu, Y. 2017 Methods in Molecular Biology. Humana Press Inc., Vol. 1571, p. 389-406 18 p. (Methods in Molecular Biology; vol. 1571)

Research output: Chapter in Book/Report/Conference proceedingChapter

Catalytic DNA
Gold
Nanoparticles
Metals
Ions
2016

Biocatalysis for Drug Discovery and Development

Liang, Y., Zhang, M. M., Ang, E. L. & Zhao, H. May 13 2016 Green Biocatalysis. wiley, p. 421-455 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Alcuronium
Biocatalysis
Drug products
Ameloblastoma
Cerebellar Ataxia

Combined and iterative use of computational design and directed evolution for protein-ligand binding design

Wang, M. & Zhao, H. May 1 2016 Methods in Molecular Biology. Humana Press Inc., Vol. 1414, p. 139-153 15 p. (Methods in Molecular Biology; vol. 1414)

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein Binding
Ligands
Switch Genes
Two-Hybrid System Techniques
Estrogen Receptor alpha

Design of Heteronuclear Metalloenzymes

Bhagi-Damodaran, A., Hosseinzadeh, P., Mirts, E., Reed, J., Petrik, I. D. & Lu, Y. 2016 Methods in Enzymology. Academic Press Inc., Vol. 580, p. 501-537 37 p. (Methods in Enzymology; vol. 580)

Research output: Chapter in Book/Report/Conference proceedingChapter

Metals
Proteins
Scaffolds
Ions
Kernicterus

Engineered minicellulosomes for consolidated bioprocessing

Liang, Y., Ang, E. L. & Zhao, H. Jul 11 2016 Handbook of Carbohydrate-Modifying Biocatalysts. Pan Stanford Publishing Pte. Ltd., Vol. 2, p. 965-992 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Free D-aspartate in nonmammalian animals: Detection, localization, metabolism, and function

Patel, A. V., Kawai, T., Rubakhin, S. S. & Sweedler, J. V. Jan 1 2016 D-Amino Acids: Physiology, Metabolism, and Application. Springer Japan, p. 173-197 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

D-Aspartic Acid
Amino Acids
Neurotransmitter Agents
Porphobilinogen Synthase
Cerebellar Ataxia

Highly efficient SiRNA delivery mediated by cationic helical polypeptides and polypeptide-based nanosystems

Yin, L., Zheng, N. & Cheng, J. 2016 Methods in Molecular Biology. Humana Press Inc., Vol. 1364, p. 37 1 p. (Methods in Molecular Biology; vol. 1364)

Research output: Chapter in Book/Report/Conference proceedingChapter

Small Interfering RNA
Peptides
RNA Interference
Oral Administration
Gene Expression

High-throughput screening or selection methods for evolutionary enzyme engineering

Shi, S., Zhang, H., Ang, E. L. & Zhao, H. May 17 2016 Understanding Enzymes: Function, Design, Engineering and Analysis. Pan Stanford Publishing Pte. Ltd., p. 707-744 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Enzymes

Molecular imaging with spectral CT nanoprobes

Pan, D., Schmieder, A. H., SenPan, A., Yang, X., Wickline, S. A., Roessl, E., Proksa, R., Schirra, C. O. & Lanza, G. M. Jan 1 2016 Design and Applications of Nanoparticles in Biomedical Imaging. Springer International Publishing, p. 385-402 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tomography
Molecular Imaging
Down Syndrome
Detectors
Antimetabolites

Noninvasive optical imaging of stem cell differentiation in biomaterials using photonic crystal surfaces

Choi, J. S., Zhuo, Y., Cunningham, B. T. & Harley, B. A. C. Nov 14 2016 Monitoring and Evaluation of Biomaterials and their Performance In Vivo. Elsevier Inc., p. 195-207 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optics and Photonics
Optical Imaging
Biocompatible Materials
Cell Differentiation
Stem Cells
2015

Biomaterial Scaffolds for Tendon Tissue Engineering

Hortensius, R., Mozdzen, L. & Harley, B. Jan 1 2015 Tendon Regeneration: Understanding Tissue Physiology and Development to Engineer Functional Substitutes. Elsevier Inc., p. 349-380 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biocompatible Materials
Tissue Engineering
Tendons
Cicatrix
Extracellular Matrix

Biophotonics for assessing breast cancer

Erickson-Bhatt, S. J. & Boppart, S. A. Jun 25 2015 Biophotonics for Medical Applications. Elsevier Inc., p. 175-214 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Adenofibroma
Imaging techniques
Oral Submucous Fibrosis
Contraception Behavior
Biological Availability

Data analysis and signal postprocessing for optical coherence tomography

Ralston, T. S., Marks, D. L., Ahmad, A. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 407-436 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Oral Submucous Fibrosis
Optical tomography
tomography
Optical Coherence Tomography
Signal processing

Design and quality control for translating 3D-printed scaffolds

Hollister, S. J., Flanagan, C. L., Zopf, D. A., Morrison, R. J., Nasser, H., Wheeler, M. B. & Green, G. E. Aug 7 2015 Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 43-59 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Splints
Quality Control
Lasers
Equipment and Supplies
Three Dimensional Printing

Detection of protein biomarker using a blood glucose meter

Lan, T., Xiang, Y. & Lu, Y. Jan 27 2015 Mobile Health Technologies: Methods and Protocols. Springer New York, p. 99-109 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Blood Glucose
Biological Markers
Proteins
Antimony Potassium Tartrate
Beryllium

DSP technology and methods for OCT

Ali, M., Ahmad, A. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 437-458 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Acyclic Acids
Oral Submucous Fibrosis
Optical Coherence Tomography
Technology
Optical tomography

Image Reconstruction in MRI

Ying, L. & Liang, Z. P. Feb 14 2015 Acquisition Methods, Methods and Modeling. Elsevier Inc., Vol. 1, p. 223-229 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Computer-Assisted Image Processing

Interferometric synthetic aperture microscopy (ISAM)

Adie, S. G., Shemonski, N. D., Ralston, T. S., Carney, P. S. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 965-1004 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Adenofibroma
Imaging techniques
Microscopy
aberration
microscopy

Intraoperative OCT in surgical oncology

South, F. A., Marjanovic, M. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 2393-2412 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Library Catalogs
Contraception Behavior
Tumors
Tissue
tumors

Molecular optical coherence tomography contrast enhancement and imaging

Oldenburg, A. L., Applegate, B. E., Tucker-Schwartz, J. M., Skala, M. C., Kim, J. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1429-1454 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysics
Microscopic examination
Optical Coherence Tomography
Microscopy
Library Catalogs

Nanomaterials for diagnostic imaging of the brain

Qin, E. & Kong, H. Jul 23 2015 Biomedical Engineering: Frontier Research and Converging Technologies. Springer International Publishing, Vol. 9, p. 77-89 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanostructures
Diagnostic Imaging
Brain
Adenofibroma
Imaging techniques

Nonlinear interferometric vibrational imaging (NIVI) with novel optical sources

Boppart, S. A., King, M. D., Liu, Y., Tu, H. & Gruebele, M. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1237-1256 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Imaging
Raman Spectrum Analysis
Optical Imaging
Nanoparticles
Contrast Media

Optical coherence elastography

Kennedy, B. F., Kennedy, K. M., Oldenburg, A. L., Adie, S. G., Boppart, S. A. & Sampson, D. D. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1007-1054 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Elasticity Imaging Techniques
Library Catalogs
Supravalvular Aortic Stenosis
Carbamyl Phosphate
Tissue

Optical coherence tomography in tissue engineering

Zhao, Y., Yang, Y., Wang, R. K. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1965-2001 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Oral Submucous Fibrosis
Optical tomography
Optical Coherence Tomography
Tissue Engineering
tomography

Stereolithographic 3D bioprinting for biomedical applications

Raman, R. & Bashir, R. Aug 7 2015 Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Acyclic Acids
Bioprinting
Technology
beta-Amylase
Myofibrils
2014

A two-plasmid bacterial selection system for characterization and engineering of homing endonucleases

Sun, N. & Zhao, H. 2014 Methods in Molecular Biology. Vol. 1123, p. 87-96 10 p. (Methods in Molecular Biology; vol. 1123)

Research output: Chapter in Book/Report/Conference proceedingChapter

Endonucleases
Plasmids
Double-Stranded DNA Breaks
Cell Survival

A two-plasmid bacterial selection system for characterization and engineering of homing endonucleases

Sun, N. & Zhao, H. 2014 Homing Endonucleases: Methods and Protocols. Humana Press Inc., Vol. 1123, p. 87-96 10 p. (Methods in Molecular Biology; vol. 1123)

Research output: Chapter in Book/Report/Conference proceedingChapter

Endonucleases
Plasmids
Double-Stranded DNA Breaks
Cell Survival

Directed evolution of enzymes for industrial biocatalysis

Liang, Y., Ang, E. L. & Zhao, H. Jan 1 2014 Industrial Biocatalysis. Pan Stanford Publishing Pte. Ltd., p. 73-114 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Enzymes

Functional Nucleic Acid-Directed Assembly of Nanomaterials and Their Applications as Colorimetric and Fluorescent Sensors for Trace Contaminants in Water

Mazumdar, D., Liu, J. & Lu, Y. May 6 2014 Nanotechnology Applications for Clean Water: Solutions for Improving Water Quality: Second Edition. Elsevier Inc., p. 73-92 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecules
Sensors
Nucleic acids
DNA
Impurities

Impedance microbiology and microbial screening strategy for detecting pathogens in food

Flint, S., Naila, A. & Bashir, R. Sep 4 2014 High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 285-300 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microbiology
impedance
Electric Impedance
Food
Testing

Leveraging structure-based rational drug design and nanotechnology to destroy leukemic stem cells

Uckun, F. M., Cheng, J., Mao, C. & Qazi, S. Jan 1 2014 Stem Cells, Tissue Engineering and Regenerative Medicine. World Scientific Publishing Co., p. 449-464 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanotechnology
Drug Design
Stem Cells
Stem cells
2013

A web-based community for modeling and design of mems

Gilgunn, P. J., Clark, J. V., Aluru, N., Mukherjee, T. & Fedder, G. K. Feb 6 2013 System-level Modeling of MEMS. Wiley-VCH Verlag, Vol. 10, p. 501-517 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Schematic diagrams
Hierarchical systems
Thesauri
MEMS
Websites

Construction and engineering of large biochemical pathways via DNA assembler

Shao, Z. & Zhao, H. 2013 Synthetic Biology. Vol. 1073, p. 85-106 22 p. (Methods in Molecular Biology; vol. 1073)

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA
Multigene Family
Synthetic Biology
Metabolic Engineering
Homologous Recombination

Construction and screening of an antigen-derived peptide library displayed on yeast cell surface for CD4+ T cell epitope identification

Wen, F. & Zhao, H. 2013 Immunoproteomics: Methods and Protocols. Vol. 1061, p. 245-264 20 p. (Methods in Molecular Biology; vol. 1061)

Research output: Chapter in Book/Report/Conference proceedingChapter

Peptide Library
T-Lymphocyte Epitopes
Yeasts
Antigens
Major Histocompatibility Complex

Drug Discovery and Development via Synthetic Biology

Cobb, R. E., Luo, Y., Freestone, T. & Zhao, H. 2013 Synthetic Biology. Elsevier Inc., p. 183-206 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic Biology
Drug Discovery
Multigene Family
Biological Products
Cyclic AMP Receptor Protein

Employing the biology of successful fracture repair to heal critical size bone defects

Cameron, J. A., Milner, D. J., Lee, J. S., Cheng, J., Fang, N. X. & Jasiuk, I. M. 2013 New Perspectives in Regeneration. Vol. 367, p. 113-132 20 p. (Current Topics in Microbiology and Immunology; vol. 367)

Research output: Chapter in Book/Report/Conference proceedingChapter

Bone and Bones
Bone Regeneration
Blood Vessels
Osteogenesis
Extremities

Fourier transform light scattering of tissues

Kim, T., Sridharan, S. & Popescu, G. Jan 1 2013 Handbook of Coherent-Domain Optical Methods: Biomedical Diagnostics, Environmental Monitoring, and Materials Science:: Second Edition. Springer New York, Vol. 1-2, p. 259-290 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Histocompatibility
Fourier Analysis
Light scattering
Library Catalogs
Pelvic Inflammatory Disease

Functional DNA-integrated nanomaterials for biosensing

Li, L. & Lu, Y. Aug 1 2013 DNA Nanotechnology: From Structure to Function. Springer-Verlag Berlin Heidelberg, p. 277-305 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanostructures
DNA
Nanoparticles
Nanostructured materials
Molecules

Imaging and tracking of bone marrow-derived immune and stem cells

Zhao, Y., Bower, A. J., Graf, B. W., Boppart, M. D. & Boppart, S. A. 2013 Imaging and Tracking Stem Cells: Methods and Protocols. Vol. 1052, p. 57-76 20 p. (Methods in Molecular Biology; vol. 1052)

Research output: Chapter in Book/Report/Conference proceedingChapter

Stem Cells
Bone Marrow
Microscopy
Bone Marrow Cells
Regeneration

In Vivo Synthesis of Tissues and Organs

Harley, B. A. C. & Yannas, I. V. Nov 2013 Principles of Tissue Engineering: Fourth Edition. Elsevier Inc., p. 325-355 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Library Catalogs
Regeneration
Wounds and Injuries
Enzyme Reactivators
Cerebellar Ataxia

Metalloprotein Design

Lu, Y., Chakraborty, S., Miner, K. D., Wilson, T. D., Mukherjee, A., Yu, Y., Liu, J. & Marshall, N. M. Aug 2013 Comprehensive Inorganic Chemistry II (Second Edition): From Elements to Applications. Elsevier Ltd, Vol. 3, p. 565-593 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Actinobacillosis
Buformin
Meclofenoxate
Signal transduction
Scaffolds

New Mass Spectrometric Approaches for Uncovering Neuropeptides

Hou, X. & Sweedler, J. V. 2013 Handbook of Biologically Active Peptides. Elsevier Inc., p. 1749-1756 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuropeptides

Pathway engineering as an enabling synthetic biology tool

Eriksen, D. T., Li, S. & Zhao, H. 2013 Synthetic Biology. Elsevier Inc., p. 43-61 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic Biology
Metabolic Networks and Pathways
Cerebellar Ataxia
Glucaric Acid
Butylene Glycols

Quantitative ultrasound history and successes

Ghoshal, G., Oelze, M. L. & O’brien, W. D. Jan 1 2013 Quantitative Ultrasound in Soft Tissues. Springer Netherlands, p. 21-42 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ultrasonography
History
Equipment and Supplies
Diagnostic Imaging
Medicine

Rational Design of Protein Cages for Alternative Enzymatic Functions

Marshall, N. M., Miner, K. D., Wilson, T. D. & Lu, Y. Apr 2 2013 Coordination Chemistry in Protein Cages: Principles, Design, and Applications. John Wiley and Sons, p. 111-147 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cortodoxone
Inorganic Chemistry
Scaffolds
Electrons

State of the art methods for estimating backscatter coefficients

Ghoshal, G., Mamou, J. & Oelze, M. L. Jan 1 2013 Quantitative Ultrasound in Soft Tissues. Springer Netherlands, p. 3-20 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Diagnostic Imaging
History