Research Output 1960 2018

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2018

Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals

Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C. & Jin, Y. S. Jan 1 2018 Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, Vol. 162, p. 175-215 41 p. (Advances in Biochemical Engineering/Biotechnology; vol. 162)

Research output: ResearchChapter

Biofuels
Saccharomyces cerevisiae
Fossil Fuels
Genomics
Biomass

Pathway design, engineering, and optimization

Garcia-Ruiz, E., HamediRad, M. & Zhao, H. Jan 1 2018 Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, Vol. 162, (Advances in Biochemical Engineering/Biotechnology; vol. 162)

Research output: ResearchChapter

Biofuels
Enzymes
Pharmaceutical Preparations
Microorganisms
2017

Electrokinetic Transport and Fluidic Manipulation in Three Dimensional Integrated Nanofluidic Networks

King, T. L., Jin, X., Nandigana, V. R., Aluru, N. & Bohn, P. W. Jan 1 2017 Nanofluidics, 2nd Edition. 41 ed. Royal Society of Chemistry, Vol. 2017-January, p. 37-75 39 p. (RSC Nanoscience and Nanotechnology; vol. 2017-January, no. 41)

Research output: ResearchChapter

fluidics
electrokinetics
manipulators
Nanofluidics
Fluidics

Enhanced Learning through Multimodal Training: Evidence from a Comprehensive Cognitive, Physical Fitness, and Neuroscience Intervention

Ward, N., Paul, E., Watson, P., Cooke, G. E., Hillman, C. H., Cohen, N. J., Kramer, A. F. & Barbey, A. K. Dec 1 2017 Scientific Reports. Nature Publishing Group, (Scientific Reports; vol. 7)

Research output: ResearchChapter

Physical Fitness
Neurosciences
Learning
Exercise
Cognition

Hydrothermal liquefaction (HTL): A promising pathway for biorefinery of algae

Tian, C., Liu, Z. & Zhang, Y. Jan 1 2017 Algal Biofuels: Recent Advances and Future Prospects. Springer International Publishing, p. 361-392 32 p.

Research output: ResearchChapter

liquefaction
alga
Liquefaction

Qflow cytometry-based receptoromic screening: A high-throughput quantification approach informing biomarker selection and nanosensor development

Chen, S., Weddell, J., Gupta, P., Conard, G., Parkin, J. & Imoukhuede, P. I. 2017 Methods in Molecular Biology. Humana Press Inc., Vol. 1570, p. 117-138 22 p. (Methods in Molecular Biology; vol. 1570)

Research output: ResearchChapter

Biomarkers
Immunohistochemistry
Calibration
Vascular Endothelial Growth Factor Receptor
Antibody Specificity

Strain development by whole-cell directed evolution

Si, T., Lian, J. & Zhao, H. Jan 1 2017 Directed Enzyme Evolution: Advances and Applications. Springer International Publishing, p. 173-200 28 p.

Research output: ResearchChapter

Phenotype
Workflow
Mutation
Screening

“Dipstick” colorimetric detection of metal ions based on immobilization of DNAzyme and gold nanoparticles onto a lateral flow device

Mazumdar, D., Lan, T. & Lu, Y. 2017 Methods in Molecular Biology. Humana Press Inc., Vol. 1571, p. 389-406 18 p. (Methods in Molecular Biology; vol. 1571)

Research output: ResearchChapter

Catalytic DNA
Immobilization
Gold
Nanoparticles
Metals
2016

Biocatalysis for Drug Discovery and Development

Liang, Y., Zhang, M. M., Ang, E. L. & Zhao, H. May 13 2016 Green Biocatalysis. wiley, p. 421-455 35 p.

Research output: ResearchChapter

Pharmaceutical Preparations
Biocatalysis
Drug Discovery
Industry
Enzymes

Combined and iterative use of computational design and directed evolution for protein-ligand binding design

Wang, M. & Zhao, H. May 1 2016 Methods in Molecular Biology. Humana Press Inc., Vol. 1414, p. 139-153 15 p. (Methods in Molecular Biology; vol. 1414)

Research output: ResearchChapter

Protein Binding
Ligands
Switch Genes
Two-Hybrid System Techniques
Mutagenesis

Design of Heteronuclear Metalloenzymes

Bhagi-Damodaran, A., Hosseinzadeh, P., Mirts, E., Reed, J., Petrik, I. D. & Lu, Y. Jan 1 2016 Methods in Enzymology. Academic Press Inc., Vol. 580, p. 501-537 37 p. (Methods in Enzymology; vol. 580)

Research output: ResearchChapter

Proteins
Metals
Scaffolds
Metal ions
Ions

Engineered minicellulosomes for consolidated bioprocessing

Liang, Y., Ang, E. L. & Zhao, H. Jul 11 2016 Handbook of Carbohydrate-Modifying Biocatalysts. Pan Stanford Publishing Pte. Ltd., Vol. 2, p. 965-992 28 p.

Research output: ResearchChapter

Free D-aspartate in nonmammalian animals: Detection, localization, metabolism, and function

Patel, A. V., Kawai, T., Rubakhin, S. S. & Sweedler, J. V. Jan 1 2016 D-Amino Acids: Physiology, Metabolism, and Application. Springer Japan, p. 173-197 25 p.

Research output: ResearchChapter

D-Aspartic Acid
Metabolism
Animals
Amino Acids
Neurotransmitter Agents

Highly efficient SiRNA delivery mediated by cationic helical polypeptides and polypeptide-based nanosystems

Yin, L., Zheng, N. & Cheng, J. Jan 1 2016 Methods in Molecular Biology. Humana Press Inc., Vol. 1364, 1 p. (Methods in Molecular Biology; vol. 1364)

Research output: ResearchChapter

Small Interfering RNA
Peptides
RNA Interference
Oral Administration
Gene Expression

High-throughput screening or selection methods for evolutionary enzyme engineering

Shi, S., Zhang, H., Ang, E. L. & Zhao, H. May 17 2016 Understanding Enzymes: Function, Design, Engineering and Analysis. Pan Stanford Publishing Pte. Ltd., p. 707-744 38 p.

Research output: ResearchChapter

High-throughput Screening
Enzymes
Engineering
Cracks

Molecular imaging with spectral CT nanoprobes

Pan, D., Schmieder, A. H., SenPan, A., Yang, X., Wickline, S. A., Roessl, E., Proksa, R., Schirra, C. O. & Lanza, G. M. Jan 1 2016 Design and Applications of Nanoparticles in Biomedical Imaging. Springer International Publishing, p. 385-402 18 p.

Research output: ResearchChapter

Nanoprobes
Molecular imaging
Tomography
Molecular Imaging
Detectors

Noninvasive optical imaging of stem cell differentiation in biomaterials using photonic crystal surfaces

Choi, J. S., Zhuo, Y., Cunningham, B. T. & Harley, B. A. C. Nov 14 2016 Monitoring and Evaluation of Biomaterials and their Performance In Vivo. Elsevier Inc., p. 195-207 13 p.

Research output: ResearchChapter

Optics and Photonics
Optical Imaging
Biocompatible Materials
Cell Differentiation
Stem Cells
2015

Biomaterial Scaffolds for Tendon Tissue Engineering

Hortensius, R., Mozdzen, L. & Harley, B. Jan 1 2015 Tendon Regeneration: Understanding Tissue Physiology and Development to Engineer Functional Substitutes. Elsevier Inc., p. 349-380 32 p.

Research output: ResearchChapter

Biocompatible Materials
Tissue Engineering
Tendons
Cicatrix
Extracellular Matrix

Biophotonics for assessing breast cancer

Erickson-Bhatt, S. J. & Boppart, S. A. Jun 25 2015 Biophotonics for Medical Applications. Elsevier Inc., p. 175-214 40 p.

Research output: ResearchChapter

Imaging techniques
Optical tomography
Tumors
Infrared radiation
Mammography

Data analysis and signal postprocessing for optical coherence tomography

Ralston, T. S., Marks, D. L., Ahmad, A. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 407-436 30 p.

Research output: ResearchChapter

tomography
Optical tomography
Optical Coherence Tomography
signal processing
Signal processing

Design and quality control for translating 3D-printed scaffolds

Hollister, S. J., Flanagan, C. L., Zopf, D. A., Morrison, R. J., Nasser, H., Wheeler, M. B. & Green, G. E. Aug 7 2015 Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 43-59 17 p.

Research output: ResearchChapter

Splints
Quality Control
Lasers
Scaffolds
Quality control

Detection of protein biomarker using a blood glucose meter

Lan, T., Xiang, Y. & Lu, Y. Jan 27 2015 Mobile Health Technologies: Methods and Protocols. Springer New York, p. 99-109 11 p.

Research output: ResearchChapter

Blood Glucose
Biomarkers
Proteins
Monitoring
beta-Fructofuranosidase

Development of microfluidic devices for the manipulation of neuronal synapses

Jain, A. & Gillette, M. U. Mar 10 2015 Microfluidic and Compartmentalized Platforms for Neurobiological Research. Springer New York, p. 127-137 11 p.

Research output: ResearchChapter

Lab-On-A-Chip Devices
Synapses
synapse
cells
Microfluidics

Development of polyester-drug nanoconjugates for cancer targeting and treatment

Yin, Q., Tong, R., Wang, H. & Cheng, J. Jan 1 2015 Biodegradable Polymers. Volume 1: Advancement in Biodegradation Study and Applications. Nova Science Publishers, Inc., p. 239-261 23 p.

Research output: ResearchChapter

Nanoconjugates
Polyesters
Nanoparticles
Pharmaceutical Preparations
Medical nanotechnology

DSP technology and methods for OCT

Ali, M., Ahmad, A. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 437-458 22 p.

Research output: ResearchChapter

Optical tomography
Digital signal processors
Optical Coherence Tomography
Technology
central processing units

Image Reconstruction in MRI

Ying, L. & Liang, Z. P. Feb 14 2015 Acquisition Methods, Methods and Modeling. Elsevier Inc., Vol. 1, p. 223-229 7 p.

Research output: ResearchChapter

Computer-Assisted Image Processing

Interferometric synthetic aperture microscopy (ISAM)

Adie, S. G., Shemonski, N. D., Ralston, T. S., Carney, P. S. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 965-1004 40 p.

Research output: ResearchChapter

synthetic apertures
microscopy
Synthetic apertures
Microscopic examination
Imaging techniques

Intraoperative OCT in surgical oncology

South, F. A., Marjanovic, M. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 2393-2412 20 p.

Research output: ResearchChapter

Oncology
Tumors
Tissue
tumors
cancer

Molecular optical coherence tomography contrast enhancement and imaging

Oldenburg, A. L., Applegate, B. E., Tucker-Schwartz, J. M., Skala, M. C., Kim, J. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1429-1454 26 p.

Research output: ResearchChapter

Optical Coherence Tomography
Microscopy
Optical tomography
Microscopic examination
Imaging techniques

Nanomaterials for diagnostic imaging of the brain

Qin, E. & Kong, H. Jul 23 2015 Biomedical Engineering: Frontier Research and Converging Technologies. Springer International Publishing, Vol. 9, p. 77-89 13 p.

Research output: ResearchChapter

Nanostructures
Diagnostic Imaging
Brain
Nanostructured materials
Imaging techniques

Nonlinear interferometric vibrational imaging (NIVI) with novel optical sources

Boppart, S. A., King, M. D., Liu, Y., Tu, H. & Gruebele, M. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1237-1256 20 p.

Research output: ResearchChapter

Molecular Imaging
Raman Spectrum Analysis
Optical Imaging
Nanoparticles
Contrast Media

Optical coherence elastography

Kennedy, B. F., Kennedy, K. M., Oldenburg, A. L., Adie, S. G., Boppart, S. A. & Sampson, D. D. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1007-1054 48 p.

Research output: ResearchChapter

Tissue
Elasticity Imaging Techniques
Mechanical properties
mechanical properties
Optical tomography

Optical coherence tomography in tissue engineering

Zhao, Y., Yang, Y., Wang, R. K. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1965-2001 37 p.

Research output: ResearchChapter

tissue engineering
tomography
Optical tomography
Tissue engineering
Optical Coherence Tomography

Stereolithographic 3D bioprinting for biomedical applications

Raman, R. & Bashir, R. Aug 7 2015 Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

Research output: ResearchChapter

Bioprinting
Technology
Stereolithography
Medical applications
Biomedical Technology
2014

A two-plasmid bacterial selection system for characterization and engineering of homing endonucleases

Sun, N. & Zhao, H. 2014 Methods in Molecular Biology. Vol. 1123, p. 87-96 10 p. (Methods in Molecular Biology; vol. 1123)

Research output: ResearchChapter

Endonucleases
Plasmids
DNA Cleavage
Double-Stranded DNA Breaks
Cell Survival

A two-plasmid bacterial selection system for characterization and engineering of homing endonucleases

Sun, N. & Zhao, H. 2014 Homing Endonucleases: Methods and Protocols. Humana Press Inc., Vol. 1123, p. 87-96 10 p. (Methods in Molecular Biology; vol. 1123)

Research output: ResearchChapter

Endonucleases
Plasmids
DNA Cleavage
Double-Stranded DNA Breaks
Cell Survival

Clinical translation of photoacoustic tomography

Erpelding, T. N., Maslov, K., Appleton, C., Margenthaler, J. A., Pashley, M. D., Zou, J., Culver, J. P., Akers, W. J., Achilefu, S., Pan, D., Lanza, G. M. & Wang, L. V. May 1 2014 Translational Research in Biophotonics: Four National Cancer Institute Case Studies. SPIE, p. 83-157 75 p.

Research output: ResearchChapter

Directed evolution of enzymes for industrial biocatalysis

Liang, Y., Ang, E. L. & Zhao, H. Jan 1 2014 Industrial Biocatalysis. Pan Stanford Publishing Pte. Ltd., p. 73-114 42 p.

Research output: ResearchChapter

Biocatalysis
Enzymes
Cracks

Fourier transform infrared (Ft-Ir) spectroscopic imaging for solid tumor histopathology

Biswas, S., Walsh, M. J. & Bhargava, R. Jan 1 2014 Optical Spectroscopy and Computational Methods in Biology and Medicine. Springer Netherlands, p. 475-504 30 p.

Research output: ResearchChapter

Tumors
Infrared radiation
Cytology
Infrared imaging

Functional Nucleic Acid-Directed Assembly of Nanomaterials and Their Applications as Colorimetric and Fluorescent Sensors for Trace Contaminants in Water

Mazumdar, D., Liu, J. & Lu, Y. May 6 2014 Nanotechnology Applications for Clean Water: Solutions for Improving Water Quality: Second Edition. Elsevier Inc., p. 73-92 20 p.

Research output: ResearchChapter

Nucleic acids
Nanostructured materials
Impurities
Sensors
Water

Impedance microbiology and microbial screening strategy for detecting pathogens in food

Flint, S., Naila, A. & Bashir, R. Sep 4 2014 High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 285-300 16 p.

Research output: ResearchChapter

impedance
food pathogens
microbiology
screening
Microbiology

Leveraging structure-based rational drug design and nanotechnology to destroy leukemic stem cells

Uckun, F. M., Cheng, J., Mao, C. & Qazi, S. Jan 1 2014 Stem Cells, Tissue Engineering and Regenerative Medicine. World Scientific Publishing Co., p. 449-464 16 p.

Research output: ResearchChapter

Nanotechnology
Drug Design
Stem Cells
Slip forming

Vibrational spectroscopy for food quality and safety screening

Craig, A. P., Franca, A. S. & Irudayaraj, J. Sep 4 2014 High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 165-194 30 p.

Research output: ResearchChapter

food quality
food safety
spectroscopy
screening
Food Quality
2013

A web-based community for modeling and design of mems

Gilgunn, P. J., Clark, J. V., Aluru, N., Mukherjee, T. & Fedder, G. K. Feb 6 2013 System-level Modeling of MEMS. Wiley-VCH Verlag, Vol. 10, p. 501-517 17 p.

Research output: ResearchChapter

Schematic diagrams
Hierarchical systems
MEMS
Websites

Construction and engineering of large biochemical pathways via DNA assembler

Shao, Z. & Zhao, H. 2013 Synthetic Biology. Vol. 1073, p. 85-106 22 p. (Methods in Molecular Biology; vol. 1073)

Research output: ResearchChapter

DNA
Multigene Family
aureothin
Synthetic Biology
Metabolic Engineering

Construction and screening of an antigen-derived peptide library displayed on yeast cell surface for CD4+ T cell epitope identification

Wen, F. & Zhao, H. 2013 Immunoproteomics: Methods and Protocols. Vol. 1061, p. 245-264 20 p. (Methods in Molecular Biology; vol. 1061)

Research output: ResearchChapter

Peptide Library
T-Lymphocyte Epitopes
Yeasts
Antigens
Major Histocompatibility Complex

Drug Discovery and Development via Synthetic Biology

Cobb, R. E., Luo, Y., Freestone, T. & Zhao, H. Aug 27 2013 Synthetic Biology. Elsevier Inc., p. 183-206 24 p.

Research output: ResearchChapter

Synthetic Biology
Drug Discovery
Multigene Family
Biological Products
Pharmaceutical Preparations

Employing the biology of successful fracture repair to heal critical size bone defects

Cameron, J. A., Milner, D. J., Lee, J. S., Cheng, J., Fang, N. X. & Jasiuk, I. M. Apr 29 2013 New Perspectives in Regeneration. Vol. 367, p. 113-132 20 p. (Current Topics in Microbiology and Immunology; vol. 367)

Research output: ResearchChapter

Bone and Bones
Bone Regeneration
Blood Vessels
Osteogenesis
Extremities

Fourier transform light scattering of tissues

Kim, T., Sridharan, S. & Popescu, G. Jan 1 2013 Handbook of Coherent-Domain Optical Methods: Biomedical Diagnostics, Environmental Monitoring, and Materials Science:: Second Edition. Springer New York, Vol. 1-2, p. 259-290 32 p.

Research output: ResearchChapter

Light scattering
Tissue
Fourier Analysis
Light
Experiments

Functional DNA-integrated nanomaterials for biosensing

Li, L. & Lu, Y. Aug 1 2013 DNA Nanotechnology: From Structure to Function. Springer-Verlag Berlin Heidelberg, Vol. 9783642360770, p. 277-305 29 p.

Research output: ResearchChapter

Nanostructures
DNA
Nanostructured materials
Nanoparticles
Molecules