Research Output

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2020

Compact quantum dots for quantitative cytology

Le, P., Chitoor, S., Tu, C., Lim, S. J. & Smith, A. M., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 147-158 12 p. (Methods in Molecular Biology; vol. 2064).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Bacterial expression of membrane-associated cytochrome P450s and their activity assay in nanodiscs

Maroutsos, D., Huff, H. & Das, A., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 47-72 26 p. (Methods in Molecular Biology; vol. 1927).

Research output: Chapter in Book/Report/Conference proceedingChapter

CHAPTER 2: Design and Engineering of Heme Enzymes with O2-dependent Catalytic Activity

Cui, C., Reed, J. H., Mirts, E. N. & Lu, Y., Jan 1 2019, Dioxygen-dependent Heme Enzymes. Ikeda-Saito, M. & Raven, E. (eds.). 13 ed. Royal Society of Chemistry, p. 37-62 26 p. (RSC Metallobiology; vol. 2019-January, no. 13).

Research output: Chapter in Book/Report/Conference proceedingChapter

Construction and Screening of an Antigen-Derived Peptide Library Displayed on Yeast Cell Surface for CD4+ T Cell Epitope Identification

Wen, F., Smith, M. R. & Zhao, H., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 213-234 22 p. (Methods in Molecular Biology; vol. 2024).

Research output: Chapter in Book/Report/Conference proceedingChapter

Delta integration CRISPR-Cas (Di-CRISPR) in saccharomyces cerevisiae

Shi, S., Liang, Y., Ang, E. L. & Zhao, H., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 73-91 19 p. (Methods in Molecular Biology; vol. 1927).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuropeptidomics of the mammalian brain

Xie, F., Anapindi, K. D. B., Romanova, E. V. & Sweedler, J. V., Jan 1 2019, Neuromethods. Humana Press Inc., p. 161-177 17 p. (Neuromethods; vol. 146).

Research output: Chapter in Book/Report/Conference proceedingChapter

Novel Anti-inflammatory and Vasodilatory ω-3 Endocannabinoid Epoxide Regioisomers

Carnevale, L. N. & Das, A., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 219-232 14 p. (Advances in Experimental Medicine and Biology; vol. 1161).

Research output: Chapter in Book/Report/Conference proceedingChapter

Tunneling—Percolation behavior of graphene-encapsulated whiskers as electroconductive fillers for ceramics

Hussainova, I., Ivanov, R., Sudhir Kale, S. & Jasiuk, I., Jan 1 2019, Advanced Structured Materials. Springer-Verlag Berlin Heidelberg, p. 131-139 9 p. (Advanced Structured Materials; vol. 95).

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

5 - Hydrothermal liquefaction of protein-containing feedstocks

Zhang, Y. & Chen, W. T., Jan 1 2018, Direct Thermochemical Liquefaction for Energy Applications. Elsevier, p. 127-168 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Applying advanced dna assembly methods to generate pathway libraries

Eriksen, D. T., Chao, R. & Zhao, H., Mar 15 2018, Synthetic Biology: Parts, Devices and Applications. Wiley-VCH Verlag, p. 331-347 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

A practical guide to molecular dynamics simulations of DNA origami systems

Yoo, J., Li, C. Y., Slone, S. M., Maffeo, C. & Aksimentiev, A., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 209-229 21 p. (Methods in Molecular Biology; vol. 1811).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example

Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y. S., Blaschek, H. P. & Wang, Y., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 297-325 29 p. (Methods in Molecular Biology; vol. 1772).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Coupling fluxes, enzymes, and regulation in genome-scale metabolic models

Jensen, P. A., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 337-351 15 p. (Methods in Molecular Biology; vol. 1716).

Research output: Chapter in Book/Report/Conference proceedingChapter

Directed evolution of targeted recombinases for genome engineering

Sirk, S. J., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 89-102 14 p. (Methods in Molecular Biology; vol. 1867).

Research output: Chapter in Book/Report/Conference proceedingChapter

Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals

Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C. & Jin, Y. S., Jan 1 2018, Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, p. 175-215 41 p. (Advances in Biochemical Engineering/Biotechnology; vol. 162).

Research output: Chapter in Book/Report/Conference proceedingChapter

Manufacturing and delivering genome-editing proteins

Liu, J., Liang, Y. J., Ren, P. L. & Gaj, T., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 253-273 21 p. (Methods in Molecular Biology; vol. 1867).

Research output: Chapter in Book/Report/Conference proceedingChapter

Metabolic Engineering of Saccharomyces cerevisiae Using a Trifunctional CRISPR/Cas System for Simultaneous Gene Activation, Interference, and Deletion

Schultz, C., Lian, J. & Zhao, H., Jan 1 2018, Methods in Enzymology. Scrutton, N. (ed.). Academic Press Inc., p. 265-276 12 p. (Methods in Enzymology; vol. 608).

Research output: Chapter in Book/Report/Conference proceedingChapter

Network dynamics theory of human intelligence

Nikolaidis, A. & Barbey, A. K., Jan 1 2018, The Cambridge Handbook of the Neuroscience of Creativity. Cambridge University Press, p. 382-404 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Non-targeted identification of d-amino acid-containing peptides through enzymatic screening, chiral amino acid analysis, and LC-MS

Tai, H. C., Checco, J. W. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 107-118 12 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pathway design, engineering, and optimization

Garcia-Ruiz, E., HamediRad, M. & Zhao, H., Jan 1 2018, Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, (Advances in Biochemical Engineering/Biotechnology; vol. 162).

Research output: Chapter in Book/Report/Conference proceedingChapter

Surface treatment of metallic biomaterials in contact with blood to enhance hemocompatibility

Allain, J. P. & Echeverry-Rendón, M., Jan 1 2018, Hemocompatibility of Biomaterials for Clinical Applications: Blood-Biomaterials Interactions. Elsevier Inc., p. 279-326 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Targeted gene knock out using nuclease-assisted vector integration: Hemi- and Homozygous deletion of JAG1

Gapinske, M., Tague, N., Winter, J., Underhill, G. H. & Perez-Pinera, P., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 233-248 16 p. (Methods in Molecular Biology; vol. 1772).

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

2.16 Collagen-GAG materials

Hortensius, R. A. & Harley, B. A. C., Jan 1 2017, Comprehensive Biomaterials II. Elsevier, p. 351-380 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Acetylated low density lipoprotein and the delivery of lmmunomodulators to macrophages

Rutherford, M. S., Futch, W. S. & Schook, L. B., Jan 1 2017, Lipoproteins as Carriers of Pharmacological Agents. CRC Press, p. 221-223 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biosensing based on surface-enhanced raman spectroscopy

Liu, G. L., Zheng, W., Zhang, P. & Chen, F., Jan 1 2017, Biosensors Based on Nanomaterials and Nanodevices. Li, J. & Wu, N. (eds.). CRC Press, p. 111-155 45 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Broadband chirality in twisted metamaterials

Askarpour, A. N., Zhao, Y. & Alùc, A., Jul 6 2017, Broadband Metamaterials in Electromagnetics: Technology and Applications. Werner, D. H. (ed.). Pan Stanford Publishing Pte. Ltd., p. 289-320 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chapter 7: Computational Characterization of Molecular Mechanisms of Membrane Transporter Function

Trebesch, N., Vermaas, J. V. & Tajkhorshid, E., Jan 1 2017, Computational Biophysics of Membrane Proteins. Hirst, J. & Domene, C. (eds.). 10 ed. Royal Society of Chemistry, p. 197-236 40 p. (RSC Theoretical and Computational Chemistry Series; vol. 2017-January, no. 10).

Research output: Chapter in Book/Report/Conference proceedingChapter

Electrokinetic Transport and Fluidic Manipulation in Three Dimensional Integrated Nanofluidic Networks

King, T. L., Jin, X., Nandigana, V. R., Aluru, N. & Bohn, P. W., Jan 1 2017, Nanofluidics, 2nd Edition. O'Brien, P., Edel, J., Ivanov, A. & Kim, M. (eds.). 41 ed. Royal Society of Chemistry, p. 37-75 39 p. (RSC Nanoscience and Nanotechnology; vol. 2017-January, no. 41).

Research output: Chapter in Book/Report/Conference proceedingChapter

Hydrothermal liquefaction (HTL): A promising pathway for biorefinery of algae

Tian, C., Liu, Z. & Zhang, Y., Jan 1 2017, Algal Biofuels: Recent Advances and Future Prospects. Springer International Publishing, p. 361-392 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Integrated cantilever-based biosensors for the detection of chemical and biological entities

Corbin, E. A., YekrangSafakar, A., Adeniba, O., Gupta, A., Park, K. & Bashir, R., Jan 1 2017, Nanotechnology in Biology and Medicine: Methods, Devices, and Applications, Second Edition. CRC Press, p. 469-529 61 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

In vivo biodetection using surface-enhanced raman spectroscopy

Lee, S., Kadam, U. S., Craig, A. P. & Irudayaraj, J., Jan 1 2017, Biosensors Based on Nanomaterials and Nanodevices. Li, J. & Wu, N. (eds.). CRC Press, p. 157-178 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanostructured biointerfaces

Allain, J. P., Echeverry-Rendón, M., Pavón, J. J. & Arias, S. L., Jan 1 2017, Nanopatterning and Nanoscale Devices for Biological Applications. CRC Press, p. 41-72 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Noninvasive optical imaging of stem cell differentiation in biomaterials using photonic crystal surfaces

Choi, J. S., Zhuo, Y., Cunningham, B. T. & Harley, B. A. C., Jan 1 2017, Monitoring and Evaluation of Biomaterials and their Performance In Vivo. Elsevier Inc., p. 195-207 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical microscopy and spectroscopy for epigenetic modifications in single living cells

Cui, Y. & Irudayaraj, J., Jan 1 2017, Methods in Pharmacology and Toxicology. Humana Press Inc., p. 135-154 20 p. (Methods in Pharmacology and Toxicology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Qflow cytometry-based receptoromic screening: A high-throughput quantification approach informing biomarker selection and nanosensor development

Chen, S., Weddell, J., Gupta, P., Conard, G., Parkin, J. & Imoukhuede, P. I., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 117-138 22 p. (Methods in Molecular Biology; vol. 1570).

Research output: Chapter in Book/Report/Conference proceedingChapter

Strain development by whole-cell directed evolution

Si, T., Lian, J. & Zhao, H., Jan 1 2017, Directed Enzyme Evolution: Advances and Applications. Springer International Publishing, p. 173-200 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The mediterranean diet and healthy brain aging: Innovations from nutritional cognitive neuroscience

Zamroziewicz, M. K. & Barbey, A. K., Jan 1 2017, Role of the Mediterranean Diet in the Brain and Neurodegenerative Diseases. Elsevier, p. 17-33 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

“Dipstick” colorimetric detection of metal ions based on immobilization of DNAzyme and gold nanoparticles onto a lateral flow device

Mazumdar, D., Lan, T. & Lu, Y., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 389-406 18 p. (Methods in Molecular Biology; vol. 1571).

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Abdominal applications of shear wave ultrasound vibrometry and supersonic shear imaging

Song, P. & Chen, S., Jan 1 2016, Ultrasound Elastography for Biomedical Applications and Medicine. Wiley, p. 492-503 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biocatalysis for Drug Discovery and Development

Liang, Y., Zhang, M. M., Ang, E. L. & Zhao, H., May 13 2016, Green Biocatalysis. Wiley, p. 421-455 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cardiovascular application of shear wave elastography

Song, P. & Chen, S., Jan 1 2016, Ultrasound Elastography for Biomedical Applications and Medicine. Wiley, p. 520-533 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Combined and iterative use of computational design and directed evolution for protein-ligand binding design

Wang, M. & Zhao, H., May 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 139-153 15 p. (Methods in Molecular Biology; vol. 1414).

Research output: Chapter in Book/Report/Conference proceedingChapter

Comb-push ultrasound shear elastography

Song, P. & Chen, S., Jan 1 2016, Ultrasound Elastography for Biomedical Applications and Medicine. Wiley, p. 388-397 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Design of Heteronuclear Metalloenzymes

Bhagi-Damodaran, A., Hosseinzadeh, P., Mirts, E., Reed, J., Petrik, I. D. & Lu, Y., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 501-537 37 p. (Methods in Enzymology; vol. 580).

Research output: Chapter in Book/Report/Conference proceedingChapter

Engineered minicellulosomes for consolidated bioprocessing

Liang, Y., Ang, E. L. & Zhao, H., Jul 11 2016, Handbook of Carbohydrate-Modifying Biocatalysts. Pan Stanford Publishing Pte. Ltd., Vol. 2. p. 965-992 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Free D-aspartate in nonmammalian animals: Detection, localization, metabolism, and function

Patel, A. V., Kawai, T., Rubakhin, S. & Sweedler, J. V., Jan 1 2016, D-Amino Acids: Physiology, Metabolism, and Application. Springer Japan, p. 173-197 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene delivery method using photo-responsive poly(β-amino ester) as vectors

Zheng, N., Liu, Y. & Cheng, J., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 259-267 9 p. (Methods in Molecular Biology; vol. 1445).

Research output: Chapter in Book/Report/Conference proceedingChapter

High-Efficiency Genome Editing of Streptomyces Species by an Engineered CRISPR/Cas System

Wang, Y., Cobb, R. E. & Zhao, H., 2016, Methods in Enzymology. O'Connor, S. E. (ed.). Academic Press Inc., p. 271-284 14 p. (Methods in Enzymology; vol. 575).

Research output: Chapter in Book/Report/Conference proceedingChapter

Highly efficient SiRNA delivery mediated by cationic helical polypeptides and polypeptide-based nanosystems

Yin, L., Zheng, N. & Cheng, J., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., 1 p. (Methods in Molecular Biology; vol. 1364).

Research output: Chapter in Book/Report/Conference proceedingChapter