Research Output 1960 2018

2018

Colorimetric imaging of layer-by-layer molecular deposition on nanoplasmonic lycurgus cup array

Hu, Y., Ameen, A., Hsiao, A. & Liu, G. L. Jan 1 2018 In : Sensors and Actuators, B: Chemical. 254, p. 827-833 7 p.

Research output: Contribution to journalArticle

Edema Disease of Swine
Artificial Organs
Molecules
Sensors
Adenofibroma

Integrated spectroscopic analysis system with low vertical height for measuring liquid or solid assays

Wan, Y., Carlson, J. A., Al-Mulla, S. A., Peng, W., Long, K. D., Kesler, B. A., Su, P., Dallesasse, J. M. & Cunningham, B. T. Feb 1 2018 In : Sensors and Actuators, B: Chemical. 255, p. 935-943 9 p.

Research output: Contribution to journalArticle

Birth Certificates
liquids
Liquids
Fasciola
Butylene Glycols
2017

3D-Printed Multidrug-Eluting Stent from Graphene-Nanoplatelet-Doped Biodegradable Polymer Composite

Misra, S. K., Ostadhossein, F., Babu, R., Kus, J., Tankasala, D., Sutrisno, A., Walsh, K. A., Bromfield, C. R. & Pan, D. Jun 7 2017 In : Advanced Healthcare Materials. 6, 11, 1700008

Research output: Contribution to journalArticle

Graphite
Stents
Polymers
Cytotoxic T-Lymphocytes
Composite materials

3D-Printed pHEMA Materials for Topographical and Biochemical Modulation of Dorsal Root Ganglion Cell Response

Badea, A., McCracken, J. M., Tillmaand, E. G., Kandel, M. E., Oraham, A. W., Mevis, M. B., Rubakhin, S. S., Popescu, G., Sweedler, J. V. & Nuzzo, R. G. Sep 13 2017 In : ACS Applied Materials and Interfaces. 9, 36, p. 30318-30328 11 p.

Research output: Contribution to journalArticle

Cell growth
Traffic Accidents
Cells
Castration
Forms (concrete)

3D Printed Stem-Cell-Laden, Microchanneled Hydrogel Patch for the Enhanced Release of Cell-Secreting Factors and Treatment of Myocardial Infarctions

Melhem, M. R., Park, J., Knapp, L., Reinkensmeyer, L., Cvetkovic, C., Flewellyn, J., Lee, M. K., Jensen, T. W., Bashir, R., Kong, H. & Schook, L. B. Sep 11 2017 In : ACS Biomaterials Science and Engineering. 3, 9, p. 1980-1987 8 p.

Research output: Contribution to journalArticle

Stem cells
Status Epilepticus
Gels
Microchannels
Tissue

5-HT2C Agonists Modulate Schizophrenia-Like Behaviors in Mice

Pogorelov, V. M., Rodriguiz, R. M., Cheng, J., Huang, M., Schmerberg, C. M., Meltzer, H. Y., Roth, B. L., Kozikowski, A. P. & Wetsel, W. C. Apr 12 2017 In : Neuropsychopharmacology.

Research output: Contribution to journalArticle

Serotonin
Schizophrenia
Antipsychotic Agents
Dopamine
Amphetamine

Achieving uniformity and reproducibility for photonic crystal fluorescence enhanced disease diagnostic microarrays

Race, C. M., Kwon, L. & Cunningham, B. T. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808961

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence
Photonic crystals
Assays
Scanning
Lasers

A contactless ultrasonic surface wave approach to characterize distributed cracking damage in concrete

Ham, S., Song, H., Oelze, M. L. & Popovics, J. S. Mar 1 2017 In : Ultrasonics. 75, p. 46-57 12 p.

Research output: Contribution to journalArticle

Ultrasonics
surface waves
ultrasonics
scattering
microcracks

Activation and Desensitization Mechanism of AMPA Receptor-TARP Complex by Cryo-EM

Chen, S., Zhao, Y., Wang, Y., Shekhar, M., Tajkhorshid, E. & Gouaux, E. Sep 7 2017 In : Cell. 170, 6, p. 1234-1246.e14

Research output: Contribution to journalArticle

AMPA Receptors
Proteins
Quisqualic Acid
Kainic Acid
Ion Channels

Advances in the development of aptamer drug conjugates for targeted drug delivery

Chen, K., Liu, B., Yu, B., Zhong, W., Lu, Y., Zhang, J., Liao, J., Liu, J., Pu, Y., Qiu, L., Zhang, L., Liu, H. & Tan, W. May 1 2017 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1438

Research output: Contribution to journalReview article

Drug delivery
Starch Gel Electrophoresis
Oligonucleotides
Biomarkers
Medicine

A high-throughput cell microarray platform for correlative analysis of cell differentiation and traction forces

Kaylan, K. B., Kourouklis, A. P. & Underhill, G. H. Mar 1 2017 In : Journal of Visualized Experiments. 2017, 121, e55362

Research output: Contribution to journalArticle

Traction
Cell Differentiation
Microarrays
Canidae
Hydrogel

Algae biomass as a precursor for synthesis of nitrogen-and sulfur-co-doped carbon dots: A better probe in Arabidopsis guard cells and root tissues

Zhang, C., Xiao, Y., Ma, Y., Li, B., Liu, Z., Lu, C., Liu, X., Wei, Y., Zhu, Z. & Zhang, Y. Sep 1 2017 In : Journal of Photochemistry and Photobiology B: Biology. 174, p. 315-322 8 p.

Research output: Contribution to journalArticle

biomass
Plant Cells
Sulfur
Arabidopsis
Biomass

A modular approach to the design, fabrication, and characterization of muscle-powered biological machines

Raman, R., Cvetkovic, C. & Bashir, R. Mar 1 2017 In : Nature Protocols. 12, 3, p. 519-533 15 p.

Research output: Contribution to journalArticle

Muscles
Actuators
Aldehyde Oxidoreductases
Bioengineering
Biocompatible Materials

Anaerobic co-digestion of chicken manure and microalgae Chlorella sp.: Methane potential, microbial diversity and synergistic impact evaluation

Li, R., Duan, N., Zhang, Y., Liu, Z., Li, B., Zhang, D. & Dong, T. Mar 11 2017 In : Waste Management.

Research output: Contribution to journalArticle

digestion
manure
methane
methanogenesis
substrate

Anaerobic digestion of wastewater generated from the hydrothermal liquefaction of Spirulina: Toxicity assessment and minimization

Zheng, M., Schideman, L. C., Tommaso, G., Chen, W. T., Zhou, Y., Nair, K., Qian, W., Zhang, Y. & Wang, K. 2017 In : Energy Conversion and Management. 141, p. 420-428 9 p.

Research output: Contribution to journalArticle

Liquefaction
Wastewater
Methane
Anaerobic digestion
Activated carbon

An automated microfluidic assay for the detection of cancer biomarkers in serum using photonic crystal enhanced fluorescence

Kwon, L., Race, C., Foreman, M. & Cunningham, B. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808960

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Assays
Photonic crystals
Fluorescence
Biomarkers
Microfluidics

An EQT-based cDFT approach for thermodynamic properties of confined fluid mixtures

Motevaselian, M. H. & Aluru, N. R. Apr 21 2017 In : Journal of Chemical Physics. 146, 15, 154102

Research output: Contribution to journalArticle

thermodynamic properties
Ageusia
methane
density functional theory
molecules

A New Era of Genome Integration - Simply Cut and Paste!

Liu, Z., Liang, Y., Ang, E. L. & Zhao, H. Apr 21 2017 In : ACS Synthetic Biology. 6, 4, p. 601-609 9 p.

Research output: Contribution to journalReview article

Ointments
Genome
Lutheran Blood-Group System
Homologous Recombination
Cyclic AMP Receptor Protein

An information-based machine learning approach to elasticity imaging

Hoerig, C., Ghaboussi, J. & Insana, M. F. Jun 1 2017 In : Biomechanics and Modeling in Mechanobiology. 16, 3, p. 805-822 18 p.

Research output: Contribution to journalArticle

Imaging
Imaging techniques
Artificial Intelligence
Elasticity
Estimate

An integrative circuit–host modelling framework for predicting synthetic gene network behaviours

Liao, C., Blanchard, A. E. & Lu, T. Sep 25 2017 In : Nature Microbiology. p. 1-9 9 p.

Research output: Contribution to journalArticle

Synthetic Genes
Gene Regulatory Networks
Synthetic Biology
Population Dynamics
Ecology

A Nitrogen-Doped Carbon Catalyst for Electrochemical CO2 Conversion to CO with High Selectivity and Current Density

Jhong, H. R. M., Tornow, C. E., Smid, B., Gewirth, A. A., Lyth, S. M. & Kenis, P. J. A. 2017 In : ChemSusChem. 10, 6, p. 1094-1099 6 p.

Research output: Contribution to journalArticle

Catalysts
catalyst
Afferent Loop Syndrome
Current density
density current

A novel method for predicting activity of cis-regulatory modules, based on a diverse training set

Yang, W. & Sinha, S. 2017 In : Bioinformatics. 33, 1, p. 1-7 7 p.

Research output: Contribution to journalArticle

Module
African horse sickness virus
Chemical analysis
Transcription Factors
Genome

Antibody Subclass Detection Using Graphene Nanopores

Barati Farimani, A., Heiranian, M., Min, K. & Aluru, N. R. Apr 6 2017 In : Journal of Physical Chemistry Letters. 8, 7, p. 1670-1676 7 p.

Research output: Contribution to journalArticle

Nanopores
Antibodies
Graphene
Motor Skills
Proteins

Anti-inflammatory ω-3 endocannabinoid epoxides

McDougle, D. R., Watson, J. E., Abdeen, A. A., Adili, R., Caputo, M. P., Krapf, J. E., Johnson, R. W., Kilian, K. A., Holinstat, M. & Das, A. Jul 25 2017 In : Proceedings of the National Academy of Sciences of the United States of America. 114, 30, p. E6034-E6043

Research output: Contribution to journalArticle

Endocannabinoids
Epoxy Compounds
Anti-Inflammatory Agents
Acids
Omega-3 Fatty Acids

A plug-and-play pathway refactoring workflow for natural product research in Escherichia coli and Saccharomyces cerevisiae

Ren, H., Hu, P. & Zhao, H. Aug 1 2017 In : Biotechnology and Bioengineering. 114, 8, p. 1847-1854 8 p.

Research output: Contribution to journalArticle

Workflow
Biological Products
Saccharomyces cerevisiae
Escherichia coli
Genes

A point-of-care microfluidic biochip for quantification of CD64 expression from whole blood for sepsis stratification

Hassan, U., Ghonge, T., Reddy, B., Patel, M., Rappleye, M., Taneja, I., Tanna, A., Healey, R., Manusry, N., Price, Z., Jensen, T., Berger, J., Hasnain, A., Flaugher, E., Liu, S., Davis, B., Kumar, J., White, K. & Bashir, R. Jul 3 2017 In : Nature Communications. 8, 15949

Research output: Contribution to journalArticle

Microfluidics
Sepsis
blood
Biochips
Blood

Application of an advanced maximum likelihood estimation restoration method for enhanced-resolution and contrast in second-harmonic generation microscopy

Sivaguru, M., Kabir, M. M., Gartia, M. R., Biggs, D. S. C., Sivaguru, B. S., Sivaguru, V. A., Fried, G. A., Liu, G. L., Sadayappan, S. & Toussaint, K. C. Sep 1 2017 In : Journal of Microscopy. 267, 3, p. 397-408 12 p.

Research output: Contribution to journalArticle

Photons
Microscopy
Signal-To-Noise Ratio
Collagen
Fibrillar Collagens
ligaments
harmonic generations
Ligaments
Jaw
Harmonic generation

Application of zeolite adsorption and biological anaerobic digestion technology on hydrothermal liquefaction wastewater

Ruirui, L., Xia, R., Na, D., Zhang, Y., Zhidan, L. & Haifeng, L. 2017 In : International Journal of Agricultural and Biological Engineering. 10, 1, p. 163-168 6 p.

Research output: Contribution to journalArticle

Zeolites
Waste Water
Adsorption
Digestion
Technology

A quantitative framework for the analysis of multimodal optical microscopy images

Bower, A. J., Chidester, B., Li, J., Zhao, Y., Marjanovic, M., Chaney, E. J., Do, M. N. & Boppart, S. A. 2017 In : Quantitative Imaging in Medicine and Surgery. 7, 1, p. 24-37 14 p.

Research output: Contribution to journalArticle

Microscopy
Cell Death
Datasets
Support Vector Machines

Aromatic thermosetting copolyester foam core and aluminum foam face three-layer sandwich composite for impact energy absorption

Bakir, M., Bahceci, E., Meyer, J. L., Economy, J. & Jasiuk, I. Jun 1 2017 In : Materials Letters. 196, p. 288-291 4 p.

Research output: Contribution to journalArticle

foams
Foams
Ambroxol
aluminum
Aluminum

Aromatic thermosetting copolyester nanocomposite foams: High thermal and mechanical performance lightweight structural materials

Bakir, M., Meyer, J. L., Economy, J. & Jasiuk, I. Aug 11 2017 In : Polymer (United Kingdom). 123, p. 311-320 10 p.

Research output: Contribution to journalArticle

Laryngeal Mucosa
Ambroxol
Foams
Nanocomposites
Filaricides

A Scalable Epitope Tagging Approach for High Throughput ChIP-Seq Analysis

Xiong, X., Zhang, Y., Yan, J., Jain, S., Chee, S., Ren, B. & Zhao, H. Jun 16 2017 In : ACS Synthetic Biology. 6, 6, p. 1034-1042 9 p.

Research output: Contribution to journalArticle

Chromatin Immunoprecipitation
Epitopes
Genes
Cyclic AMP Receptor Protein
Clustered Regularly Interspaced Short Palindromic Repeats

Assessing composition and structure of soft biphasic media from Kelvin-Voigt fractional derivative model parameters

Zhang, H., Wang, Y., Fatemi, M. & Insana, M. F. Jan 17 2017 In : Measurement Science and Technology. 28, 3, 035703

Research output: Contribution to journalArticle

Model
Chemical analysis
Kelvin
Fractional derivative
Mechanical properties

A Subspace Approach to Spectral Quantification for MR Spectroscopic Imaging

Li, Y., Lam, F., Clifford, B. & Liang, Z. P. Aug 18 2017 In : IEEE Transactions on Biomedical Engineering.

Research output: Contribution to journalArticle

Imaging techniques
Magnetic resonance
Parameter estimation
Molecules

A two-pool model to describe the IVIM cerebral perfusion

Fournet, G., Li, J. R., Cerjanic, A. M., Sutton, B. P., Ciobanu, L. & Le Bihan, D. Aug 1 2017 In : Journal of Cerebral Blood Flow and Metabolism. 37, 8, p. 2987-3000 14 p.

Research output: Contribution to journalArticle

Microvessels
Blood Vessels
Magnetic Resonance Imaging
Datasets

A unique combination of micronutrients rejuvenates cognitive performance in aged mice

Perez, S. D., Du, K., Rendeiro, C., Wang, L., Wu, Q., Rubakhin, S. S., Vazhappilly, R., Baxter, J. H., Sweedler, J. V. & Rhodes, J. S. Mar 1 2017 In : Behavioural Brain Research. 320, p. 97-112 16 p.

Research output: Contribution to journalArticle

Micronutrients
Diet
Mitochondrial DNA
Interleukin-10
Hippocampus

Automatic Gleason grading of prostate cancer using quantitative phase imaging and machine learning

Nguyen, T. H., Sridharan, S., MacIas, V., Kajdacsy-Balla, A., Melamed, J., Do, M. N. & Popescua, G. Mar 1 2017 In : Journal of Biomedical Optics. 22, 3, 036015

Research output: Contribution to journalArticle

Library Catalogs
Tissue
Adenofibroma
Learning systems
machine learning

Automatic parameter tuning for image denoising with learned sparsifying transforms

Pfister, L. & Bresler, Y. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 6040-6044 5 p. 7953316

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image denoising
Tuning
Filter banks
Analytical models
Experiments

A validated, transitional and translational porcine model of hepatocellular carcinoma

Schachtschneider, K. M., Schwind, R. M., Darfour-Oduro, K. A., De, A. K., Rund, L. A., Singh, K., Principe, D. R., Guzman, G., Ray, C. E., Ozer, H., Gaba, R. C. & Schook, L. B. 2017 In : Oncotarget. 8, 38, p. 63620-63634 15 p.

Research output: Contribution to journalArticle

Hepatocellular Carcinoma
Swine
Neoplasms
Recombinases
SCID Mice

Bacteria-Assisted Activation of Antimicrobial Polypeptides by a Random-Coil to Helix Transition

Xiong, M., Han, Z., Song, Z., Yu, J., Ying, H., Yin, L. & Cheng, J. Aug 28 2017 In : Angewandte Chemie - International Edition. 56, 36, p. 10826-10829 4 p.

Research output: Contribution to journalArticle

Peptides
Toxicity
Cells
Acrodermatitis
Castration

Behavioral, transcriptomic and epigenetic responses to social challenge in honey bees

Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Cash-Ahmed, A. C., Seward, C. H., Sloofman, L., Chandrasekaran, S., Sinha, S., Stubbs, L. J. & Robinson, G. E. 2017 In : Genes, Brain and Behavior.

Research output: Contribution to journalArticle

Honey
Bees
Epigenomics
Brain
Genes

BIM-Sim: Interactive simulation of broadband imaging using mie theory

Berisha, S., van Dijk, T., Bhargava, R., Carney, P. S. & Mayerich, D. Feb 20 2017 In : Frontiers in Physics. 5, FEB, 5

Research output: Contribution to journalArticle

electromagnetic fields
Adenofibroma
Genetic Research
Electromagnetic fields
Imaging techniques

Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates

Sun, H., Zhang, H., Ang, E. L. & Zhao, H. 2017 In : Bioorganic and Medicinal Chemistry.

Research output: Contribution to journalArticle

Biocatalysis
Enzymes
Cerebellar Ataxia
Oxidoreductases
Protein Engineering
Chlorella
Manure
Biofuels
Chickens
Oils

Biocrude oil production from Chlorella sp. cultivated in anaerobic digestate after UF membrane treatment

Meng, W., Xinfeng, W., Zhangbing, Z., Jianwen, L., Zhang, Y., Baoming, L., Haifeng, L., Na, D., Dongming, Z., Taili, D. & Zhidan, L. 2017 In : International Journal of Agricultural and Biological Engineering. 10, 1, p. 148-153 6 p.

Research output: Contribution to journalArticle

Chlorella
Ultrafiltration
Oils
Membranes
oils

Bioethanol production from cellulosic hydrolysates by engineered industrial Saccharomyces cerevisiae

Lee, Y. G., Jin, Y. S., Cha, Y. L. & Seo, J. H. 2017 In : Bioresource Technology. 228, p. 355-361 7 p.

Research output: Contribution to journalArticle

polyploidy
yeast
ethanol
Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing)
Yeast
Biological Evolution
Research Report
Curriculum
History
Saimiriine herpesvirus 2

Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids

Yu, Y., Cui, C., Wang, J. & Lu, Y. Feb 1 2017 In : Science China Chemistry. 60, 2, p. 188-200 13 p.

Research output: Contribution to journalReview article

Anthralin
Afferent Loop Syndrome
Electrons

Blind Recovery of Sparse Signals From Subsampled Convolution

Lee, K., Li, Y., Junge, M. & Bresler, Y. Feb 1 2017 In : IEEE Transactions on Information Theory. 63, 2, p. 802-821 20 p., 7774998

Research output: Contribution to journalArticle

model
algorithm
sample
performance
problem