Research Output 1960 2018

2018

3D Plasmon Coupling Assisted Sers on Nanoparticle-Nanocup Array Hybrids

Seo, S., Chang, T. W. & Liu, G. L. Dec 1 2018 In : Scientific Reports. 8, 1, 3002

Research output: Contribution to journalArticle

nanoparticles
Raman spectra
augmentation
electromagnetic absorption
light emission

A caged metabolic precursor for DT-diaphorase-responsive cell labeling

Wang, R., Cai, K., Wang, H., Yin, C. & Cheng, J. Jan 1 2018 In : Chemical Communications. 54, 38, p. 4878-4881 4 p.

Research output: Contribution to journalArticle

Metabolites
Sugars
Labeling
Cells

A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models

Tabe-Bordbar, S., Emad, A., Zhao, S. D. & Sinha, S. Dec 1 2018 In : Scientific Reports. 8, 1, 6620

Research output: Contribution to journalArticle

Gene expression
Genes
Supervised learning
Simulated annealing
Genomics

Acoustic band gaps and elastic stiffness of PMMA cellular solids based on triply periodic minimal surfaces

Abueidda, D. W., Jasiuk, I. & Sobh, N. A. May 5 2018 In : Materials and Design. 145, p. 20-27 8 p.

Research output: Contribution to journalArticle

Polymethyl Methacrylate
Energy gap
Acoustics
Stiffness
Porosity

A "cross-stitched" peptide with improved helicity and proteolytic stability

Speltz, T. E., Mayne, C. G., Fanning, S. W., Siddiqui, Z., Tajkhorshid, E., Greene, G. L. & Moore, T. W. Jan 1 2018 In : Organic and Biomolecular Chemistry. 16, 20, p. 3702-3706 5 p.

Research output: Contribution to journalArticle

Unsaturated polymers
peptides
Flood insurance
estrogens
Lactams

Advancing Metabolic Engineering of Saccharomyces cerevisiae Using the CRISPR/Cas System

Lian, J., Hamedirad, M. & Zhao, H. Jan 1 2018 (Accepted/In press) In : Biotechnology Journal.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Metabolic engineering
Metabolic Engineering
Yeast
Saccharomyces cerevisiae

Albumin as a "trojan Horse" for polymeric nanoconjugate transendothelial transport across tumor vasculatures for improved cancer targeting

Yin, Q., Tang, L., Cai, K., Yang, X., Yin, L., Zhang, Y., Dobrucki, L. W., Helferich, W. G., Fan, T. M. & Cheng, J. May 1 2018 In : Biomaterials Science. 6, 5, p. 1189-1200 12 p.

Research output: Contribution to journalArticle

Nanoconjugates
IIR filters
Tumors
Bearings (structural)
Medical nanotechnology

Alpha Lead Oxide (α-PbO): A New 2D Material with Visible Light Sensitivity

Kumar, P., Liu, J., Ranjan, P., Hu, Y., Yamijala, S. S. R. K. C., Pati, S. K., Irudayaraj, J. & Cheng, G. J. Mar 22 2018 In : Small. 14, 12, 1703346

Research output: Contribution to journalArticle

Lead oxide
Photophobia
Photosensitivity
Optics and Photonics
Light

A microfluidic biochip platform for electrical quantification of proteins

Valera, E., Berger, J., Hassan, U., Ghonge, T., Liu, J., Rappleye, M., Winter, J., Abboud, D., Haidry, Z., Healey, R., Hung, N. T., Leung, N., Mansury, N., Hasnain, A., Lannon, C., Price, Z., White, K. & Bashir, R. Jan 1 2018 In : Lab on a Chip. 18, 10, p. 1461-1470 10 p.

Research output: Contribution to journalArticle

Biochips
Microfluidics
Biomarkers
Sepsis
Point-of-Care Systems

A mutation in PGM2 causing inefficient galactose metabolism in the probiotic yeast Saccharomyces boulardii

Liu, J. J., Zhang, G. C., Kong, I. I., Yun, E. J., Zheng, J. Q., Kweon, D. H. & Jin, Y. S. May 1 2018 In : Applied and Environmental Microbiology. 84, 10, e02858-17

Research output: Contribution to journalArticle

Saccharomyces cerevisiae var. cerevisiae
probiotics
Probiotics
Galactose
Metabolism

An Overview on Additive Manufacturing of Polymers

Jasiuk, I., Abueidda, D. W., Kozuch, C., Pang, S., Su, F. Y. & McKittrick, J. Mar 1 2018 In : JOM. 70, 3, p. 275-283 9 p.

Research output: Contribution to journalArticle

Reheat cycle
3D printers
Neutron activation analysis
Polymers
Printers (computer)

A Post-Transcriptional Feedback Mechanism for Noise Suppression and Fate Stabilization

Hansen, M. M. K., Wen, W. Y., Ingerman, E., Razooky, B. S., Thompson, C. E., Dar, R. D., Chin, C. W., Simpson, M. L. & Weinberger, L. S. Jan 1 2018 (Accepted/In press) In : Cell.

Research output: Contribution to journalArticle

Noise
Time-Lapse Imaging
Messenger RNA
HIV
Protein Splicing

A Resource for Our Reagents: ACS Reagent Chemicals

Sweedler, J. V. May 1 2018 In : Analytical chemistry. 90, 9, 1 p.

Research output: Contribution to journalEditorial

Zinc plating

A roadmap for global synthesis of the plant tree of life

Eiserhardt, W. L. , Antonelli, A. , Bennett, D. J. , Botigué, L. R. , Burleigh, J. G. , Dodsworth, S. , Enquist, B. J. , Forest, F. , Kim, J. T. , Kozlov, A. M. , Leitch, I. J. , Maitner, B. S. , Mirarab, S. , Piel, W. H. , Pérez-Escobar, O. A. , Pokorny, L. , Rahbek, C. , Sandel, B. , Smith, S. A. , Stamatakis, A. & 3 others Vos, R. A., Warnow, T. & Baker, W. J. Jan 1 2018 (Accepted/In press) In : American journal of botany.

Research output: Contribution to journalArticle

synthesis
phylogeny
phylogenetics
informatics
botanists

A simple microfluidic platform for the partial treatment of insuspendable tissue samples with orientation control

Fan, A., Tofangchi, A., De Venecia, M. & Saif, T. Mar 7 2018 In : Lab on a Chip. 18, 5, p. 735-742 8 p.

Research output: Contribution to journalArticle

Microfluidics
Axons
Lab-On-A-Chip Devices
Tissue
Microchannels

Assessing gait changes in firefighters after firefighting activities and while carrying asymmetric loads

Park, K., Sy, J. F., Horn, G. P., Kesler, R. M., Petrucci, M. N., Rosengren, K. S. & Hsiao-Wecksler, E. T. Jul 1 2018 In : Applied Ergonomics. 70, p. 44-50 7 p.

Research output: Contribution to journalArticle

Firefighters
Environmental chambers
Gait
Fires
Fatigue of materials

Associations of functional connectivity and walking performance in multiple sclerosis

Bollaert, R. E., Poe, K., Hubbard, E. A., Motl, R. W., Pilutti, L. A., Johnson, C. L. & Sutton, B. P. Aug 1 2018 In : Neuropsychologia. 117, p. 8-12 5 p.

Research output: Contribution to journalArticle

Multiple Sclerosis
Walking
Temporal Lobe
Auditory Cortex
Brain

A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms

Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., King, T. L., Amaya, K. R., Arnett, C. M. & Sweedler, J. V. Feb 2 2018 (Accepted/In press) In : Analytical chemistry.

Research output: Contribution to journalArticle

Water recycling
Production control
Biofilms
Imaging techniques
Mass spectrometry

Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates

Sun, H., Zhang, H., Ang, E. L. & Zhao, H. Apr 1 2018 In : Bioorganic and Medicinal Chemistry. 26, 7, p. 1275-1284 10 p.

Research output: Contribution to journalReview article

Biocatalysis
Enzymes
Pharmaceutical Preparations
Oxidoreductases
Protein Engineering

Biocrude production and heavy metal migration during hydrothermal liquefaction of swine manure

Lu, J., Watson, J., Zeng, J., Li, H., Zhu, Z., Wang, M., Zhang, Y. & Liu, Z. Apr 1 2018 In : Process Safety and Environmental Protection. 115, p. 108-115 8 p.

Research output: Contribution to journalArticle

Oil sand refining
Waste treatment
Manures
waste treatment
Liquefaction

Biodegradable Monocrystalline Silicon Photovoltaic Microcells as Power Supplies for Transient Biomedical Implants

Lu, L., Yang, Z., Meacham, K., Cvetkovic, C., Corbin, E. A., Vázquez-Guardado, A., Xue, M., Yin, L., Boroumand, J., Pakeltis, G., Sang, T., Yu, K. J., Chanda, D., Bashir, R., Gereau, R. W., Sheng, X. & Rogers, J. A. Jan 1 2018 (Accepted/In press) In : Advanced Energy Materials.

Research output: Contribution to journalArticle

Monocrystalline silicon
Oils and fats
Skin
Fats
Tissue

Bioengineered Liver Models for Drug Testing and Cell Differentiation Studies

Underhill, G. H. & Khetani, S. R. Mar 1 2018 In : CMGH. 5, 3, p. 426-439.e1

Research output: Contribution to journalReview article

Bioprinting
Microfluidics
Cell Differentiation
Hepatocytes
Liver

Biogas liquid digestate grown Chlorella sp. for biocrude oil production via hydrothermal liquefaction

Li, H., Wang, M., Wang, X., Zhang, Y., Lu, H., Duan, N., Li, B., Zhang, D., Dong, T. & Liu, Z. Sep 1 2018 In : Science of the Total Environment. 635, p. 70-77 8 p.

Research output: Contribution to journalArticle

Oil sand refining
Biogas
Liquefaction
biogas
liquefaction

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V. Jan 1 2018 Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719)

Research output: Chapter in Book/Report/Conference proceedingChapter

Computational Biology
Neuropeptides
Peptide Hormones
Post Translational Protein Processing
Proteomics

Biophotonics: The big picture

Marcu, L., Boppart, S. A., Hutchinson, M. R., Popp, J. & Wilson, B. C. Feb 1 2018 In : Journal of biomedical optics. 23, 2, 021103

Research output: Contribution to journalArticle

physical sciences
microbalances
Direction compound

Bioprocess engineering for biohythane production from low-grade waste biomass: technical challenges towards scale up

Liu, Z., Si, B., Li, J., He, J., Zhang, C., Lu, Y., Zhang, Y. & Xing, X. H. Apr 1 2018 In : Current Opinion in Biotechnology. 50, p. 25-31 7 p.

Research output: Contribution to journalReview article

Biomass
Fermentation
Biological Phenomena
Biofuels
Biogas

Breaking the Axial Diffraction Limit: A Guide to Axial Super-Resolution Fluorescence Microscopy

Liu, W., Toussaint, K. C., Okoro, C., Zhu, D., Chen, Y., Kuang, C. & Liu, X. Jan 1 2018 (Accepted/In press) In : Laser and Photonics Reviews.

Research output: Contribution to journalArticle

Fluorescence microscopy
Diffraction
microscopy
fluorescence
diffraction

Can dynamic MRI be used to accurately identify velopharyngeal closure patterns?

Perry, J. L., Mason, K., Sutton, B. P. & Kuehn, D. P. Jan 1 2018 In : Cleft Palate-Craniofacial Journal. 55, 4, p. 499-507 9 p.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Aptitude
Cleft Palate
Anatomy

Cell-Extracellular Matrix Mechanobiology: Forceful Tools and Emerging Needs for Basic and Translational Research

Holle, A. W., Young, J. L., Van Vliet, K. J., Kamm, R. D., Discher, D., Janmey, P., Spatz, J. P. & Saif, T. Jan 10 2018 In : Unknown Journal. 18, 1, p. 1-8 8 p.

Research output: Contribution to journalReview article

cytology
Cytology
Signal transduction
gene expression
Cell death

Characterization of a reflective objective with multiphoton microscopy

Kabir, M. M., Choubal, A. M., Sivaguru, M. & Toussaint, K. C. Jan 1 2018 Multiphoton Microscopy in the Biomedical Sciences XVIII. SPIE, Vol. 10498, 104982Z

Research output: Chapter in Book/Report/Conference proceedingConference contribution

numerical aperture
Harmonic generation
Photons
Glass
Microscopy

Circadian redox rhythms in the regulation of neuronal excitability

Bothwell, M. Y. & Gillette, M. U. May 1 2018 In : Free Radical Biology and Medicine. 119, p. 45-55 11 p.

Research output: Contribution to journalReview article

Circadian Rhythm
Oxidation-Reduction
Suprachiasmatic Nucleus
Membranes
Ion Channels

Circuit-Host Coupling Induces Multifaceted Behavioral Modulations of a Gene Switch

Blanchard, A. E., Liao, C. & Lu, T. Feb 6 2018 In : Biophysical journal. 114, 3, p. 737-746 10 p.

Research output: Contribution to journalArticle

Switch Genes
Gene Regulatory Networks
Biochemical Phenomena
Synthetic Biology
Proteins

Co-culture of adipose-derived stem cells and chondrocytes on three-dimensionally printed bioscaffolds for craniofacial cartilage engineering

Morrison, R. J., Nasser, H. B., Kashlan, K. N., Zopf, D. A., Milner, D. J., Flanangan, C. L., Wheeler, M. B., Green, G. E. & Hollister, S. J. Jan 1 2018 (Accepted/In press) In : Laryngoscope.

Research output: Contribution to journalArticle

Chondrocytes
Coculture Techniques
Cartilage
Stem Cells
Tissue Engineering

Colorimetric imaging of layer-by-layer molecular deposition on nanoplasmonic lycurgus cup array

Hu, Y., Ameen, A., Hsiao, A. & Liu, G. L. Jan 1 2018 In : Sensors and Actuators, B: Chemical. 254, p. 827-833 7 p.

Research output: Contribution to journalArticle

Imaging techniques
Molecules
sensors
Sensors
molecules

Coupling fluxes, enzymes, and regulation in genome-scale metabolic models

Jensen, P. A. Jan 1 2018 Methods in Molecular Biology. Humana Press Inc., p. 337-351 15 p. (Methods in Molecular Biology; vol. 1716)

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome
Enzymes
Practice Guidelines
Software

Cytochrome aa 3 Oxygen Reductase Utilizes the Tunnel Observed in the Crystal Structures to Deliver O2 for Catalysis

Mahinthichaichan, P., Gennis, R. B. & Tajkhorshid, E. Apr 10 2018 In : Biochemistry. 57, 14, p. 2150-2161 12 p.

Research output: Contribution to journalArticle

Chemical exhibitions
Cytochrome Reductases
Molecular orbitals
Electron Transport Complex IV
Cytochromes

Design and analysis of coiled fiber reinforced soft pneumatic actuator

Singh, G., Xiao, C., Hsiao-Wecksler, E. T. & Krishnan, G. May 1 2018 In : Bioinspiration and Biomimetics. 13, 3, 036010

Research output: Contribution to journalArticle

Pneumatic actuators
Enclosures
Constriction
Fibers
Wrist

Designing Randomized DNA Sequences Free of Restriction Enzyme Recognition Sites

Storm, A. J. & Jensen, P. A. Jan 1 2018 In : Biotechnology Journal. 13, 1, 1700326

Research output: Contribution to journalArticle

Synthetic Biology
Bar codes
Genetic engineering
Genetic Engineering
DNA sequences

Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L. & Cunningham, B. T. Jun 1 2018 In : Chemosensors. 6, 2, 13

Research output: Contribution to journalReview article

Photoionization
optical resonators
counting
Cracks
nanoparticles

Detection of prostate specific antigen (PSA) in human saliva using an ultra-sensitive nanocomposite of graphene nanoplatelets with diblock-: Co -polymers and Au electrodes

Khan, M. S., Dighe, K., Wang, Z., Srivastava, I., Daza, E., Schwartz-Dual, A. S., Ghannam, J., Misra, S. K. & Pan, D. Mar 7 2018 In : Analyst. 143, 5, p. 1094-1103 10 p.

Research output: Contribution to journalArticle

Nanocomposites
saliva
Graphite
Prostate-Specific Antigen
Antigens

Deuterium uptake and sputtering of simultaneous lithiated, boronized, and oxidized carbon surfaces irradiated by low-energy deuterium

Domínguez-Gutiérrez, F. J., Krstić, P. S., Allain, J. P., Bedoya, F., Islam, M. M., Lotfi, R. & Van Duin, A. C. T. May 21 2018 In : Journal of Applied Physics. 123, 19, 195901

Research output: Contribution to journalArticle

Deuterium
Sputtering
Boron
deuterium
boron
Clostridium beijerinckii
Flavin Mononucleotide
Fluorescence
Oxygen
Metabolic Engineering

Direct Analysis of Pathogenic Structures Affixed to the Tympanic Membrane during Chronic Otitis Media

Monroy, G. L., Hong, W., Khampang, P., Porter, R. G., Novak, M. A., Spillman, D. R., Barkalifa, R., Chaney, E. J., Kerschner, J. E. & Boppart, S. A. Mar 1 2018 (Accepted/In press) In : Otolaryngology - Head and Neck Surgery (United States).

Research output: Contribution to journalArticle

Tympanic Membrane
Optical Coherence Tomography
Otitis Media
Biofilms
Lasers

Directed Evolution to Engineer Monobody for FRET Biosensor Assembly and Imaging at Live-Cell Surface

Limsakul, P., Peng, Q., Wu, Y., Allen, M. E., Liang, J., Remacle, A. G., Lopez, T., Ge, X., Kay, B. K., Zhao, H., Strongin, A. Y., Yang, X. L., Lu, S. & Wang, Y. Apr 19 2018 In : Cell Chemical Biology. 25, 4, p. 370-379.e4

Research output: Contribution to journalArticle

Phycoerythrin
Matrix Metalloproteinase 14
Fluorescence Resonance Energy Transfer
Biosensing Techniques
Unsaturated polymers

Direct fermentation of Jerusalem artichoke tuber powder for production of L-lactic acid and D-lactic acid by metabolically engineered Kluyveromyces marxianus

Bae, J. H., Kim, H. J., Kim, M. J., Sung, B. H., Jeon, J. H., Kim, H. S., Jin, Y. S., Kweon, D. H. & Sohn, J. H. Jan 20 2018 In : Journal of Biotechnology. 266, p. 27-33 7 p.

Research output: Contribution to journalArticle

Metabolic engineering
Kluyveromyces
Metabolic Engineering
Inulin
Helianthus

Disorder strength measured by quantitative phase imaging as intrinsic cancer marker in fixed tissue biopsies

Takabayashi, M., Majeed, H., Kajdacsy-Balla, A. & Popescu, G. Mar 1 2018 In : PloS one. 13, 3, e0194320

Research output: Contribution to journalArticle

biopsy
image analysis
Biopsy
neoplasms
Refractometry

Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems

Goyal, A. & Maslov, S. Apr 13 2018 In : Physical review letters. 120, 15, 158102

Research output: Contribution to journalArticle

Ecosystem
Symbiosis

DNA-encoded morphological evolution of bimetallic Pd@Au core-shell nanoparticles from a high-indexed core

Satyavolu, N. S. R., Pishevaresfahani, N., Tan, L. H. & Lu, Y. Mar 27 2018 (Accepted/In press) In : Nano Research. p. 1-13 13 p.

Research output: Contribution to journalArticle

Seed
DNA
Nanoparticles
Interfacial energy
Palladium

Double dissociation of structure-function relationships in memory and fluid intelligence observed with magnetic resonance elastography

Johnson, C. L., Schwarb, H., Horecka, K. M., McGarry, M. D. J., Hillman, C. H., Kramer, A. F., Cohen, N. J. & Barbey, A. K. May 1 2018 In : NeuroImage. 171, p. 99-106 8 p.

Research output: Contribution to journalArticle

Elasticity Imaging Techniques
Intelligence
Hippocampus
Prefrontal Cortex
Cognition

Drug-Drug Interactions between Atorvastatin and Dronedarone Mediated by Monomeric CYP3A4

Denisov, I. G., Baylon, J. L., Grinkova, Y. V., Tajkhorshid, E. & Sligar, S. G. Feb 6 2018 In : Biochemistry. 57, 5, p. 805-816 12 p.

Research output: Contribution to journalArticle

Drug interactions
Cytochrome P-450 CYP3A
Drug Interactions
Lactones
Pharmaceutical Preparations