Research Output 1960 2018

2018

Bioprocess engineering for biohythane production from low-grade waste biomass: technical challenges towards scale up

Liu, Z., Si, B., Li, J., He, J., Zhang, C., Lu, Y., Zhang, Y. & Xing, X. H. Apr 1 2018 In : Current Opinion in Biotechnology. 50, p. 25-31 7 p.

Research output: Research - peer-reviewReview article

Fermentation
Biomass
Biofuels
Industrial applications
Energy efficiency

Colorimetric imaging of layer-by-layer molecular deposition on nanoplasmonic lycurgus cup array

Hu, Y., Ameen, A., Hsiao, A. & Liu, G. L. Jan 1 2018 In : Sensors and Actuators, B: Chemical. 254, p. 827-833 7 p.

Research output: Research - peer-reviewArticle

Imaging techniques
sensors
molecules
Molecules
Sensors

Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals

Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C. & Jin, Y. S. 2018 Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, Vol. 162, p. 175-215 41 p. (Advances in Biochemical Engineering/Biotechnology; vol. 162)

Research output: ResearchChapter

Biofuels
Saccharomyces cerevisiae
Fossil Fuels
Genomics
Biomass

Integrated spectroscopic analysis system with low vertical height for measuring liquid or solid assays

Wan, Y., Carlson, J. A., Al-Mulla, S. A., Peng, W., Long, K. D., Kesler, B. A., Su, P., Dallesasse, J. M. & Cunningham, B. T. Feb 1 2018 In : Sensors and Actuators, B: Chemical. 255, p. 935-943 9 p.

Research output: Research - peer-reviewArticle

spectroscopic analysis
liquids
Spectroscopic analysis
Liquids
Assays

Pathway design, engineering, and optimization

Garcia-Ruiz, E., HamediRad, M. & Zhao, H. 2018 Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, Vol. 162, (Advances in Biochemical Engineering/Biotechnology; vol. 162)

Research output: ResearchChapter

Biofuels
Enzymes
Pharmaceutical Preparations
Microorganisms

Recent developments in the application of P450 based biocatalysts

Wei, Y., Ang, E. L. & Zhao, H. Apr 1 2018 In : Current Opinion in Chemical Biology. 43, p. 1-7 7 p.

Research output: Research - peer-reviewReview article

Mixed Function Oxygenases
Enzymes
Biological Products
Cytochrome P-450 Enzyme System
Biosynthesis
2017

1/: F pink chaos in nanopores

Nandigana, V. V. R. & Aluru, N. R. 2017 In : RSC Advances. 7, 73, p. 46092-46100 9 p.

Research output: Research - peer-reviewArticle

Nanopores
Chaos theory
Ions
Electric potential
Electrostatics

3D-Printed Multidrug-Eluting Stent from Graphene-Nanoplatelet-Doped Biodegradable Polymer Composite

Misra, S. K., Ostadhossein, F., Babu, R., Kus, J., Tankasala, D., Sutrisno, A., Walsh, K. A., Bromfield, C. R. & Pan, D. Jun 7 2017 In : Advanced Healthcare Materials. 6, 11, 1700008

Research output: Research - peer-reviewArticle

Graphite
Stents
Polymers
Biodegradable polymers
Composite materials

3D-Printed pHEMA Materials for Topographical and Biochemical Modulation of Dorsal Root Ganglion Cell Response

Badea, A., McCracken, J. M., Tillmaand, E. G., Kandel, M. E., Oraham, A. W., Mevis, M. B., Rubakhin, S. S., Popescu, G., Sweedler, J. V. & Nuzzo, R. G. Sep 13 2017 In : ACS Applied Materials and Interfaces. 9, 36, p. 30318-30328 11 p.

Research output: Research - peer-reviewArticle

Cell growth
Modulation
Lysine
hydroxyethyl methacrylate
Cells

3D Printed Stem-Cell-Laden, Microchanneled Hydrogel Patch for the Enhanced Release of Cell-Secreting Factors and Treatment of Myocardial Infarctions

Melhem, M. R., Park, J., Knapp, L., Reinkensmeyer, L., Cvetkovic, C., Flewellyn, J., Lee, M. K., Jensen, T. W., Bashir, R., Kong, H. & Schook, L. B. Sep 11 2017 In : ACS Biomaterials Science and Engineering. 3, 9, p. 1980-1987 8 p.

Research output: Research - peer-reviewArticle

Hydrogel
Stem cells
Gels
Hydrogels
Microchannels

5-HT2C Agonists Modulate Schizophrenia-Like Behaviors in Mice

Pogorelov, V. M., Rodriguiz, R. M., Cheng, J., Huang, M., Schmerberg, C. M., Meltzer, H. Y., Roth, B. L., Kozikowski, A. P. & Wetsel, W. C. Apr 12 2017 (Accepted/In press) In : Neuropsychopharmacology.

Research output: Research - peer-reviewArticle

Serotonin
Schizophrenia
Antipsychotic Agents
Dopamine
Amphetamine

Achieving uniformity and reproducibility for photonic crystal fluorescence enhanced disease diagnostic microarrays

Race, C. M., Kwon, L. & Cunningham, B. T. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808961

Research output: ResearchConference contribution

Photonic crystals
Fluorescence
Assays
Scanning
Lasers

A contactless ultrasonic surface wave approach to characterize distributed cracking damage in concrete

Ham, S., Song, H., Oelze, M. L. & Popovics, J. S. Mar 1 2017 In : Ultrasonics. 75, p. 46-57 12 p.

Research output: Research - peer-reviewArticle

surface waves
ultrasonics
damage
Ultrasonics
Direction compound

Activation and Desensitization Mechanism of AMPA Receptor-TARP Complex by Cryo-EM

Chen, S., Zhao, Y., Wang, Y., Shekhar, M., Tajkhorshid, E. & Gouaux, E. Sep 7 2017 In : Cell. 170, 6, p. 1234-1246.e14

Research output: Research - peer-reviewArticle

AMPA Receptors
Chemical activation
Proteins
Quisqualic Acid
Modulators

Active Antioxidizing Particles for On-Demand Pressure-Driven Molecular Release

Seo, Y., Leong, J., Teo, J. Y., Mitchell, J. W., Gillette, M. U., Han, B., Lee, J. & Kong, H. Oct 18 2017 In : ACS Applied Materials and Interfaces. 9, 41, p. 35642-35650 9 p.

Research output: Research - peer-reviewArticle

Nanosheets
Reactive Oxygen Species
polylactic acid-polyglycolic acid copolymer
Oxygen
Milk

A Demonstration of le Chatelier's Principle on the Nanoscale

Lin, W. & Murphy, C. J. Oct 25 2017 In : ACS Central Science. 3, 10, p. 1096-1102 7 p.

Research output: Research - peer-reviewArticle

Demonstrations
Nanoparticles
Adsorption
Proteins
Nanorods

Advances in boronization on NSTX-Upgrade

Skinner, C. H., Bedoya, F., Scotti, F., Allain, J. P., Blanchard, W., Cai, D., Jaworski, M. & Koel, B. E. Aug 1 2017 In : Nuclear Materials and Energy. 12, p. 744-748 5 p.

Research output: Research - peer-reviewArticle

Plasmas
boron
oxygen
Boron
Fusion reactions

A geometric method for eigenvalue problems with low-rank perturbations

Anastasio, T. J., Barreiro, A. K. & Bronski, J. C. Sep 27 2017 In : Royal Society Open Science. 4, 9, 170390

Research output: Research - peer-reviewArticle

Eigenvalue Problem
Perturbation
Model
Form
Operator

A high-throughput cell microarray platform for correlative analysis of cell differentiation and traction forces

Kaylan, K. B., Kourouklis, A. P. & Underhill, G. H. Mar 1 2017 In : Journal of Visualized Experiments. 2017, 121, e55362

Research output: Research - peer-reviewArticle

Traction
Cell Differentiation
Microarrays
Throughput
Hydrogel

Algae biomass as a precursor for synthesis of nitrogen-and sulfur-co-doped carbon dots: A better probe in Arabidopsis guard cells and root tissues

Zhang, C., Xiao, Y., Ma, Y., Li, B., Liu, Z., Lu, C., Liu, X., Wei, Y., Zhu, Z. & Zhang, Y. Sep 1 2017 In : Journal of Photochemistry and Photobiology B: Biology. 174, p. 315-322 8 p.

Research output: Research - peer-reviewArticle

reuse
algae
biomass
sulfur
nitrogen

A membrane-embedded pathway delivers general anesthetics to two interacting binding sites in the Gloeobacter violaceus ion channel

Arcario, M. J., Mayne, C. G. & Tajkhorshid, E. 2017 In : Journal of Biological Chemistry. 292, 23, p. 9480-9492 13 p.

Research output: Research - peer-reviewArticle

General Anesthetics
Ion Channels
Anesthetics
Binding Sites
Membranes

A method to estimate cadaveric femur cortical strains during fracture testing using digital image correlation

Rossman, T., Uthamaraj, S., Rezaei, A., McEligot, S., Giambini, H., Jasiuk, I., Yaszemski, M. J., Lu, L. & Dragomir-Daescu, D. Sep 14 2017 In : Journal of Visualized Experiments. 2017, 127, e54942

Research output: Research - peer-reviewArticle

Femur
Fracture testing
Finite Element Analysis
Paint
Thigh

A modular approach to the design, fabrication, and characterization of muscle-powered biological machines

Raman, R., Cvetkovic, C. & Bashir, R. Mar 1 2017 In : Nature Protocols. 12, 3, p. 519-533 15 p.

Research output: Research - peer-reviewArticle

Skeleton
Muscles
Muscle
Actuators
Bioengineering

Anaerobic co-digestion of chicken manure and microalgae Chlorella sp.: Methane potential, microbial diversity and synergistic impact evaluation

Li, R., Duan, N., Zhang, Y., Liu, Z., Li, B., Zhang, D. & Dong, T. Oct 1 2017 In : Waste Management. 68, p. 120-127 8 p.

Research output: Research - peer-reviewArticle

digestion
manure
methane
evaluation
effect

Anaerobic digestion of wastewater generated from the hydrothermal liquefaction of Spirulina: Toxicity assessment and minimization

Zheng, M., Schideman, L. C., Tommaso, G., Chen, W. T., Zhou, Y., Nair, K., Qian, W., Zhang, Y. & Wang, K. 2017 In : Energy Conversion and Management. 141, p. 420-428 9 p.

Research output: Research - peer-reviewArticle

Liquefaction
Toxicity
Methane
Activated carbon
Biofuels

An automated microfluidic assay for the detection of cancer biomarkers in serum using photonic crystal enhanced fluorescence

Kwon, L., Race, C., Foreman, M. & Cunningham, B. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808960

Research output: ResearchConference contribution

Photonic crystals
Microfluidics
Assays
Fluorescence
Tumor Biomarkers

An EQT-based cDFT approach for thermodynamic properties of confined fluid mixtures

Motevaselian, M. H. & Aluru, N. R. Apr 21 2017 In : Journal of Chemical Physics. 146, 15, 154102

Research output: Research - peer-reviewArticle

thermodynamic properties
density functional theory
fluids
Density functional theory
Thermodynamic properties

A New Era of Genome Integration - Simply Cut and Paste!

Liu, Z., Liang, Y., Ang, E. L. & Zhao, H. Apr 21 2017 In : ACS Synthetic Biology. 6, 4, p. 601-609 9 p.

Research output: Research - peer-reviewReview article

Ointments
Genome
Genes
Homologous Recombination
Synthetic Biology

An information-based machine learning approach to elasticity imaging

Hoerig, C., Ghaboussi, J. & Insana, M. F. Jun 1 2017 In : Biomechanics and Modeling in Mechanobiology. 16, 3, p. 805-822 18 p.

Research output: Research - peer-reviewArticle

Elasticity
Machine Learning
Imaging
Learning systems
Imaging techniques

An integrative circuit–host modelling framework for predicting synthetic gene network behaviours

Liao, C., Blanchard, A. E. & Lu, T. Sep 25 2017 (Accepted/In press) In : Nature Microbiology. p. 1-9 9 p.

Research output: Research - peer-reviewArticle

Synthetic Genes
Gene Regulatory Networks
Synthetic Biology
Population Dynamics
Ecology

A Nitrogen-Doped Carbon Catalyst for Electrochemical CO2 Conversion to CO with High Selectivity and Current Density

Jhong, H. R. M., Tornow, C. E., Smid, B., Gewirth, A. A., Lyth, S. M. & Kenis, P. J. A. 2017 In : ChemSusChem. 10, 6, p. 1094-1099 6 p.

Research output: Research - peer-reviewArticle

density current
catalyst
nitrogen
carbon
Carbon Monoxide

A novel method for predicting activity of cis-regulatory modules, based on a diverse training set

Yang, W. & Sinha, S. 2017 In : Bioinformatics. 33, 1, p. 1-7 7 p.

Research output: Research - peer-reviewArticle

Module
Training
Chemical analysis
Transcription Factors
Genome

Antibody Subclass Detection Using Graphene Nanopores

Barati Farimani, A., Heiranian, M., Min, K. & Aluru, N. R. Apr 6 2017 In : Journal of Physical Chemistry Letters. 8, 7, p. 1670-1676 7 p.

Research output: Research - peer-reviewArticle

Nanopores
Graphite
Immunoglobulin G
Antibodies
Proteins

Anti-inflammatory ω-3 endocannabinoid epoxides

McDougle, D. R., Watson, J. E., Abdeen, A. A., Adili, R., Caputo, M. P., Krapf, J. E., Johnson, R. W., Kilian, K. A., Holinstat, M. & Das, A. Jul 25 2017 In : Proceedings of the National Academy of Sciences of the United States of America. 114, 30, p. E6034-E6043

Research output: Research - peer-reviewArticle

Endocannabinoids
Epoxy Compounds
Anti-Inflammatory Agents
Acids
Omega-3 Fatty Acids

Anti-Müllerian hormone reduces growth rate without altering follicular survival in isolated caprine preantral follicles cultured in vitro

Rocha, R. M. P., Lima, L. F., Brito, I. R., Silva, G. M., Correia, H. H. V., Ribeiro De Sá, N. A., Ferreira, A. C. A., Sales, A. D., Lobo, C. H., Campello, C. C., Smitz, J., Wheeler, M. B. & Figueiredo, J. R. 2017 In : Reproduction, Fertility and Development. 29, 6, p. 1144-1154 11 p.

Research output: Research - peer-reviewArticle

Anti-Mullerian Hormone
Growth
In Vitro Techniques
anti-Mullerian hormone
goats

A plug-and-play pathway refactoring workflow for natural product research in Escherichia coli and Saccharomyces cerevisiae

Ren, H., Hu, P. & Zhao, H. Aug 1 2017 In : Biotechnology and Bioengineering. 114, 8, p. 1847-1854 8 p.

Research output: Research - peer-reviewArticle

Workflow
Biological Products
Saccharomyces cerevisiae
Escherichia coli
Research

A point-of-care microfluidic biochip for quantification of CD64 expression from whole blood for sepsis stratification

Hassan, U., Ghonge, T., Reddy, B., Patel, M., Rappleye, M., Taneja, I., Tanna, A., Healey, R., Manusry, N., Price, Z., Jensen, T., Berger, J., Hasnain, A., Flaugher, E., Liu, S., Davis, B., Kumar, J., White, K. & Bashir, R. Jul 3 2017 In : Nature Communications. 8, 15949

Research output: Research - peer-reviewArticle

Point-of-Care Systems
Microfluidics
Sepsis
leukocytes
stratification

Application of an advanced maximum likelihood estimation restoration method for enhanced-resolution and contrast in second-harmonic generation microscopy

Sivaguru, M., Kabir, M. M., Gartia, M. R., Biggs, D. S. C., Sivaguru, B. S., Sivaguru, V. A., Fried, G. A., Liu, G. L., Sadayappan, S. & Toussaint, K. C. Sep 1 2017 In : Journal of Microscopy. 267, 3, p. 397-408 12 p.

Research output: Research - peer-reviewArticle

Photons
Microscopy
Signal-To-Noise Ratio
Collagen
Fibrillar Collagens
ligaments
harmonic generations
microscopy
Ligaments
Harmonic generation

Application of zeolite adsorption and biological anaerobic digestion technology on hydrothermal liquefaction wastewater

Ruirui, L., Xia, R., Na, D., Zhang, Y., Zhidan, L. & Haifeng, L. 2017 In : International Journal of Agricultural and Biological Engineering. 10, 1, p. 163-168 6 p.

Research output: Research - peer-reviewArticle

Zeolites
Waste Water
Adsorption
Digestion
Technology

A quantitative framework for the analysis of multimodal optical microscopy images

Bower, A. J., Chidester, B., Li, J., Zhao, Y., Marjanovic, M., Chaney, E. J., Do, M. N. & Boppart, S. A. 2017 In : Quantitative Imaging in Medicine and Surgery. 7, 1, p. 24-37 14 p.

Research output: Research - peer-reviewArticle

Microscopy
Cell Death
Datasets
Support Vector Machine

Aromatic thermosetting copolyester foam core and aluminum foam face three-layer sandwich composite for impact energy absorption

Bakir, M., Bahceci, E., Meyer, J. L., Economy, J. & Jasiuk, I. Jun 1 2017 In : Materials Letters. 196, p. 288-291 4 p.

Research output: Research - peer-reviewArticle

energy absorption
foams
aluminum
composite materials
Energy absorption

Aromatic thermosetting copolyester nanocomposite foams: High thermal and mechanical performance lightweight structural materials

Bakir, M., Meyer, J. L., Economy, J. & Jasiuk, I. Aug 11 2017 In : Polymer (United Kingdom). 123, p. 311-320 10 p.

Research output: Research - peer-reviewArticle

Foams
Nanocomposites
Hot Temperature
Oligomers
Carbon

A Scalable Epitope Tagging Approach for High Throughput ChIP-Seq Analysis

Xiong, X., Zhang, Y., Yan, J., Jain, S., Chee, S., Ren, B. & Zhao, H. Jun 16 2017 In : ACS Synthetic Biology. 6, 6, p. 1034-1042 9 p.

Research output: Research - peer-reviewArticle

Chromatin Immunoprecipitation
Epitopes
Chromatin
Genes
Throughput

Assessing composition and structure of soft biphasic media from Kelvin-Voigt fractional derivative model parameters

Zhang, H., Wang, Y., Fatemi, M. & Insana, M. F. Jan 17 2017 In : Measurement Science and Technology. 28, 3, 035703

Research output: Research - peer-reviewArticle

Kelvin
Fractional Derivative
Model
Mechanical Properties
Mechanical properties

A Subspace Approach to Spectral Quantification for MR Spectroscopic Imaging

Li, Y., Lam, F., Clifford, B. & Liang, Z. P. Aug 18 2017 (Accepted/In press) In : IEEE Transactions on Biomedical Engineering.

Research output: Research - peer-reviewArticle

Imaging techniques
Magnetic resonance

A two-pool model to describe the IVIM cerebral perfusion

Fournet, G., Li, J. R., Cerjanic, A. M., Sutton, B. P., Ciobanu, L. & Le Bihan, D. Aug 1 2017 In : Journal of Cerebral Blood Flow and Metabolism. 37, 8, p. 2987-3000 14 p.

Research output: Research - peer-reviewArticle

Perfusion
Microvessels
Blood Vessels
Magnetic Resonance Imaging
Datasets

A unique combination of micronutrients rejuvenates cognitive performance in aged mice

Perez, S. D., Du, K., Rendeiro, C., Wang, L., Wu, Q., Rubakhin, S. S., Vazhappilly, R., Baxter, J. H., Sweedler, J. V. & Rhodes, J. S. Mar 1 2017 In : Behavioural Brain Research. 320, p. 97-112 16 p.

Research output: Research - peer-reviewArticle

Micronutrients
Diet
Mitochondrial DNA
Interleukin-10
Hippocampus

Automatic Gleason grading of prostate cancer using quantitative phase imaging and machine learning

Nguyen, T. H., Sridharan, S., MacIas, V., Kajdacsy-Balla, A., Melamed, J., Do, M. N. & Popescua, G. Mar 1 2017 In : Journal of Biomedical Optics. 22, 3, 036015

Research output: Research - peer-reviewArticle

machine learning
learning
cancer
Learning systems
Tissue

Automatic parameter tuning for image denoising with learned sparsifying transforms

Pfister, L. & Bresler, Y. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 6040-6044 5 p. 7953316

Research output: ResearchConference contribution

Image denoising
Tuning
Filter banks
Analytical models
Experiments