Research Output 1960 2019

2019

Point-of-use detection of ascorbic acid using a spectrometric smartphone-based system

Aguirre, M. Á., Long, K. D., Canals, A. & Cunningham, B. T., Jan 30 2019, In : Food Chemistry. 272, p. 141-147 7 p.

Research output: Contribution to journalArticle

Ascorbic acid
Smartphones
Ascorbic Acid
Methylene Blue
Electronic equipment
2018

3D Plasmon Coupling Assisted Sers on Nanoparticle-Nanocup Array Hybrids

Seo, S., Chang, T. W. & Liu, G. L., Dec 1 2018, In : Scientific Reports. 8, 1, 3002

Research output: Contribution to journalArticle

nanoparticles
Raman spectra
augmentation
electromagnetic absorption
light emission

3D printing for preoperative planning and surgical training: a review

Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J., Kesavadas, T. & Bashir, R., Sep 1 2018, In : Biomedical Microdevices. 20, 3, 65

Research output: Contribution to journalReview article

Printing
Audiovisual Aids
Planning
Diagnostic Imaging
Human Body

Ab initio based interionic potential for silver iodide

Niu, H., Jing, Y., Sun, Y. & Aluru, N. R., Nov 1 2018, In : Solid State Ionics. 325, p. 102-111 10 p.

Research output: Contribution to journalArticle

silver iodides
Silver
Density functional theory
Molecular dynamics
Structural properties

A brief assessment tool for investigating facets of moral judgment from realistic vignettes

Kruepke, M., Molloy, E. K., Bresin, K., Barbey, A. K. & Verona, E. Jun 1 2018 In : Behavior Research Methods. 50, 3, p. 922-936 15 p.

Research output: Contribution to journalArticle

Episodic Memory
Needs Assessment
Research Personnel
Vignettes
Moral Judgment

A caged metabolic precursor for DT-diaphorase-responsive cell labeling

Wang, R., Cai, K., Wang, H., Yin, C. & Cheng, J., Jan 1 2018, In : Chemical Communications. 54, 38, p. 4878-4881 4 p.

Research output: Contribution to journalArticle

Metabolites
Sugars
Labeling
Cells

A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models

Tabe-Bordbar, S., Emad, A., Zhao, S. D. & Sinha, S., Dec 1 2018, In : Scientific Reports. 8, 1, 6620

Research output: Contribution to journalArticle

Gene expression
Genes
Supervised learning
Simulated annealing
Genomics

A comparison of methods to assess cell mechanical properties

Wu, P. H. , Aroush, D. R. B. , Asnacios, A. , Chen, W. C. , Dokukin, M. E. , Doss, B. L. , Durand-Smet, P. , Ekpenyong, A. , Guck, J. , Guz, N. V. , Janmey, P. A. , Lee, J. S. H. , Moore, N. M. , Ott, A. , Poh, Y. C. , Ros, R. , Sander, M. , Sokolov, I. , Staunton, J. R. , Wang, N. & 2 others Whyte, G. & Wirtz, D., Jun 18 2018, (Accepted/In press) In : Nature Methods. p. 1-8 8 p.

Research output: Contribution to journalArticle

Cellular Microenvironment
Mechanical Stress
Rheology
Atomic Force Microscopy
Elastic Modulus

A coupled chlorinase-fluorinase system with a high efficiency of trans -halogenation and a shared substrate tolerance

Sun, H., Zhao, H. & Ang, E. L., Jan 1 2018, In : Chemical Communications. 54, 68, p. 9458-9461 4 p.

Research output: Contribution to journalArticle

Halogenation
Substrates
Enzymes
Cracks

Acoustic band gaps and elastic stiffness of PMMA cellular solids based on triply periodic minimal surfaces

Abueidda, D. W., Jasiuk, I. & Sobh, N. A., May 5 2018, In : Materials and Design. 145, p. 20-27 8 p.

Research output: Contribution to journalArticle

Polymethyl Methacrylate
Energy gap
Acoustics
Stiffness
Porosity

A "cross-stitched" peptide with improved helicity and proteolytic stability

Speltz, T. E., Mayne, C. G., Fanning, S. W., Siddiqui, Z., Tajkhorshid, E., Greene, G. L. & Moore, T. W., Jan 1 2018, In : Organic and Biomolecular Chemistry. 16, 20, p. 3702-3706 5 p.

Research output: Contribution to journalArticle

Unsaturated polymers
peptides
Flood insurance
estrogens
Lactams

Advancing Metabolic Engineering of Saccharomyces cerevisiae Using the CRISPR/Cas System

Lian, J., Hamedirad, M. & Zhao, H., Jan 1 2018, (Accepted/In press) In : Biotechnology Journal.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Metabolic engineering
Metabolic Engineering
Yeast
Saccharomyces cerevisiae

Agile optoelectronic fiber sources for hyperspectral chemical sensing from SWIR to LWIR

Kang, I., Grant, A., Dinu, M., Jaques, J., Pfister, L., Bhargava, R. & Carney, P. S., Jan 1 2018, Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XXIV. Messinger, D. W. & Velez-Reyes, M. (eds.). SPIE, Vol. 10644, 106441E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optoelectronics
Optoelectronic devices
Sensing
Infrared
Fiber

A high spatiotemporal study of somatic exocytosis with scanning electrochemical microscopy and nanoITIES electrodes

Welle, T. M., Alanis, K., Colombo, M. L., Sweedler, J. V. & Shen, M., Jan 1 2018, In : Chemical Science. 9, 22, p. 4937-4941 5 p.

Research output: Contribution to journalArticle

Cellular radio systems
Carisoprodol
Acetylcholine
Neurotransmitter Agents
Microscopic examination

Albumin as a "trojan Horse" for polymeric nanoconjugate transendothelial transport across tumor vasculatures for improved cancer targeting

Yin, Q., Tang, L., Cai, K., Yang, X., Yin, L., Zhang, Y., Dobrucki, L. W., Helferich, W. G., Fan, T. M. & Cheng, J., May 1 2018, In : Biomaterials Science. 6, 5, p. 1189-1200 12 p.

Research output: Contribution to journalArticle

Nanoconjugates
IIR filters
Tumors
Bearings (structural)
Medical nanotechnology

Alpha Lead Oxide (α-PbO): A New 2D Material with Visible Light Sensitivity

Kumar, P., Liu, J., Ranjan, P., Hu, Y., Yamijala, S. S. R. K. C., Pati, S. K., Irudayaraj, J. & Cheng, G. J. Mar 22 2018 In : Small. 14, 12, 1703346

Research output: Contribution to journalArticle

Lead oxide
Photophobia
Photosensitivity
Optics and Photonics
Light

A microfluidic biochip platform for electrical quantification of proteins

Valera, E., Berger, J., Hassan, U., Ghonge, T., Liu, J., Rappleye, M., Winter, J., Abboud, D., Haidry, Z., Healey, R., Hung, N. T., Leung, N., Mansury, N., Hasnain, A., Lannon, C., Price, Z., White, K. & Bashir, R., Jan 1 2018, In : Lab on a Chip. 18, 10, p. 1461-1470 10 p.

Research output: Contribution to journalArticle

Biochips
Microfluidics
Biomarkers
Sepsis
Point-of-Care Systems

A Millifluidic Reactor System for Multistep Continuous Synthesis of InP/ZnSeS Nanoparticles

Vikram, A., Kumar, V., Ramesh, U., Balakrishnan, K., Oh, N., Deshpande, K., Ewers, T., Trefonas, P., Shim, M. & Kenis, P. J. A., Jan 1 2018, (Accepted/In press) In : ChemNanoMat.

Research output: Contribution to journalArticle

Nanoparticles
Semiconductor quantum dots
Quantum yield
Microfluidics
Photoluminescence

A Mineralized Collagen-Polycaprolactone Composite Promotes Healing of a Porcine Mandibular Defect

Weisgerber, D. W., Milner, D. J., Lopez-Lake, H., Rubessa, M., Lotti, S., Polkoff, K., Hortensius, R. A., Flanagan, C. L., Hollister, S. J., Wheeler, M. B. & Harley, B. A. C., Jun 1 2018, In : Tissue Engineering - Part A. 24, 11-12, p. 943-954 12 p.

Research output: Contribution to journalArticle

Polycaprolactone
Collagen
Bone
Swine
Bone and Bones

A multiscale model for charge inversion in electric double layers

Mashayak, S. Y. & Aluru, N. R., Jun 7 2018, In : Journal of Chemical Physics. 148, 21, 214102

Research output: Contribution to journalArticle

multiscale models
Ions
inversions
Electrostatics
Water

A mutation in PGM2 causing inefficient galactose metabolism in the probiotic yeast Saccharomyces boulardii

Liu, J. J., Zhang, G. C., Kong, I. I., Yun, E. J., Zheng, J. Q., Kweon, D. H. & Jin, Y. S., May 1 2018, In : Applied and Environmental Microbiology. 84, 10, e02858-17

Research output: Contribution to journalArticle

Saccharomyces cerevisiae var. cerevisiae
probiotics
Probiotics
Galactose
Metabolism

A new era for electron bifurcation

Peters, J. W., Beratan, D. N., Bothner, B., Dyer, R. B., Harwood, C. S., Heiden, Z. M., Hille, R., Jones, A. K., King, P. W., Lu, Y., Lubner, C. E., Minteer, S. D., Mulder, D. W., Raugei, S., Schut, G. J., Seefeldt, L. C., Tokmina-Lukaszewska, M., Zadvornyy, O. A., Zhang, P. & Adams, M. WW., Dec 1 2018, In : Current Opinion in Chemical Biology. 47, p. 32-38 7 p.

Research output: Contribution to journalReview article

Electrons
Biochemical Phenomena
Anaerobiosis
Electron Transport Complex III
Electron Transport

Animal Model Systems in Neuroscience

Romanova, E. V. & Sweedler, J. V., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 1869-1870 2 p.

Research output: Contribution to journalEditorial

Neurosciences
Animal Models

A novel MEMS stage for in-situ thermomechanical testing of single crystal silicon microbeams under bending

Elhebeary, M. & Saif, M. T. A. Sep 1 2018 In : Extreme Mechanics Letters. 23, p. 1-8 8 p.

Research output: Contribution to journalArticle

Silicon
MEMS
Single crystals
Testing
Bending tests

An Overview on Additive Manufacturing of Polymers

Jasiuk, I., Abueidda, D. W., Kozuch, C., Pang, S., Su, F. Y. & McKittrick, J., Mar 1 2018, In : JOM. 70, 3, p. 275-283 9 p.

Research output: Contribution to journalArticle

Reheat cycle
3D printers
Neutron activation analysis
Polymers
Printers (computer)

A Post-Transcriptional Feedback Mechanism for Noise Suppression and Fate Stabilization

Hansen, M. M. K., Wen, W. Y., Ingerman, E., Razooky, B. S., Thompson, C. E., Dar, R. D., Chin, C. W., Simpson, M. L. & Weinberger, L. S., Jan 1 2018, (Accepted/In press) In : Cell.

Research output: Contribution to journalArticle

Noise
Time-Lapse Imaging
Messenger RNA
HIV
Protein Splicing

Application of a reflective microscope objective for multiphoton microscopy

Kabir, M. M., Choubal, A. M. & Toussaint, K. C., Aug 1 2018, In : Journal of Microscopy. 271, 2, p. 129-135 7 p.

Research output: Contribution to journalArticle

Photons
Glass
Microscopy
Fluorescence
Collagen

Applying advanced dna assembly methods to generate pathway libraries

Eriksen, D. T., Chao, R. & Zhao, H., Mar 15 2018, Synthetic Biology: Parts, Devices and Applications. Wiley-VCH Verlag, p. 331-347 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

A practical guide to molecular dynamics simulations of DNA origami systems

Yoo, J., Li, C. Y., Slone, S. M., Maffeo, C. & Aksimentiev, A., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 209-229 21 p. (Methods in Molecular Biology; vol. 1811)

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Dynamics Simulation
DNA
Nucleic Acids

A Resource for Our Reagents: ACS Reagent Chemicals

Sweedler, J. V., May 1 2018, In : Analytical Chemistry. 90, 9, 1 p.

Research output: Contribution to journalEditorial

Zinc plating

A roadmap for global synthesis of the plant tree of life

Eiserhardt, W. L. , Antonelli, A. , Bennett, D. J. , Botigué, L. R. , Burleigh, J. G. , Dodsworth, S. , Enquist, B. J. , Forest, F. , Kim, J. T. , Kozlov, A. M. , Leitch, I. J. , Maitner, B. S. , Mirarab, S. , Piel, W. H. , Pérez-Escobar, O. A. , Pokorny, L. , Rahbek, C. , Sandel, B. , Smith, S. A. , Stamatakis, A. & 3 others Vos, R. A., Warnow, T. & Baker, W. J., Jan 1 2018, (Accepted/In press) In : American journal of botany.

Research output: Contribution to journalArticle

synthesis
phylogeny
phylogenetics
informatics
botanists

A simple microfluidic platform for the partial treatment of insuspendable tissue samples with orientation control

Fan, A., Tofangchi, A., De Venecia, M. & Saif, T., Mar 7 2018, In : Lab on a chip. 18, 5, p. 735-742 8 p.

Research output: Contribution to journalArticle

Microfluidics
Axons
Lab-On-A-Chip Devices
Tissue
Microchannels

Assessing gait changes in firefighters after firefighting activities and while carrying asymmetric loads

Park, K., Sy, J. F., Horn, G. P., Kesler, R. M., Petrucci, M. N., Rosengren, K. S. & Hsiao-Wecksler, E. T., Jul 1 2018, In : Applied Ergonomics. 70, p. 44-50 7 p.

Research output: Contribution to journalArticle

Firefighters
Environmental chambers
Gait
Fires
Fatigue of materials

Associations of functional connectivity and walking performance in multiple sclerosis

Bollaert, R. E., Poe, K., Hubbard, E. A., Motl, R. W., Pilutti, L. A., Johnson, C. L. & Sutton, B. P., Aug 1 2018, In : Neuropsychologia. 117, p. 8-12 5 p.

Research output: Contribution to journalArticle

Multiple Sclerosis
Walking
Temporal Lobe
Auditory Cortex
Brain

A synthetic enzyme built from DNA flips 107 lipids per second in biological membranes

Ohmann, A., Li, C. Y., Maffeo, C., Al Nahas, K., Baumann, K. N., Göpfrich, K., Yoo, J., Keyser, U. F. & Aksimentiev, A., Dec 1 2018, In : Nature Communications. 9, 1, 2426

Research output: Contribution to journalArticle

enzyme
membrane
DNA
lipid
nanotechnology

Auroramycin: A Potent Antibiotic from Streptomyces roseosporus by CRISPR-Cas9 Activation

Lim, Y. H., Wong, F. T., Yeo, W. L., Ching, K. C., Lim, Y. W., Heng, E., Chen, S., Tsai, D. J., Lauderdale, T. L., Shia, K. S., Ho, Y. S., Hoon, S., Ang, E. L., Zhang, M. M. & Zhao, H., Aug 16 2018, In : ChemBioChem. 19, 16, p. 1716-1719 4 p.

Research output: Contribution to journalArticle

Slip forming
Clustered Regularly Interspaced Short Palindromic Repeats
Streptomyces
Multigene Family
Anti-Bacterial Agents

A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms

Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., King, T. L., Amaya, K. R., Arnett, C. M. & Sweedler, J. V., Feb 2 2018, (Accepted/In press) In : Analytical Chemistry.

Research output: Contribution to journalArticle

Water recycling
Production control
Biofilms
Imaging techniques
Mass spectrometry
Oxidoreductases
Nitric Oxide
Catalytic Domain
Heme
Energy transfer

Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example

Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y. S., Blaschek, H. P. & Wang, Y., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 297-325 29 p. (Methods in Molecular Biology; vol. 1772)

Research output: Chapter in Book/Report/Conference proceedingChapter

Clostridium beijerinckii
Clustered Regularly Interspaced Short Palindromic Repeats
Bacterial Genomes
Guide RNA
Streptococcus pyogenes

Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates

Sun, H., Zhang, H., Ang, E. L. & Zhao, H., Apr 1 2018, In : Bioorganic and Medicinal Chemistry. 26, 7, p. 1275-1284 10 p.

Research output: Contribution to journalReview article

Biocatalysis
Enzymes
Pharmaceutical Preparations
Oxidoreductases
Protein Engineering
Logic gates
Glucose
Enzymes
Catalytic DNA
Pyruvate Kinase

Biocrude production and heavy metal migration during hydrothermal liquefaction of swine manure

Lu, J., Watson, J., Zeng, J., Li, H., Zhu, Z., Wang, M., Zhang, Y. & Liu, Z., Apr 1 2018, In : Process Safety and Environmental Protection. 115, p. 108-115 8 p.

Research output: Contribution to journalArticle

Oil sand refining
Waste treatment
Manures
waste treatment
Liquefaction

Bioengineered Liver Models for Drug Testing and Cell Differentiation Studies

Underhill, G. H. & Khetani, S. R. Mar 1 2018 In : CMGH. 5, 3, p. 426-439.e1

Research output: Contribution to journalReview article

Bioprinting
Microfluidics
Cell Differentiation
Hepatocytes
Liver

Biogas liquid digestate grown Chlorella sp. for biocrude oil production via hydrothermal liquefaction

Li, H., Wang, M., Wang, X., Zhang, Y., Lu, H., Duan, N., Li, B., Zhang, D., Dong, T. & Liu, Z., Sep 1 2018, In : Science of the Total Environment. 635, p. 70-77 8 p.

Research output: Contribution to journalArticle

Oil sand refining
Biogas
Liquefaction
biogas
liquefaction

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719)

Research output: Chapter in Book/Report/Conference proceedingChapter

Computational Biology
Neuropeptides
Peptide Hormones
Post Translational Protein Processing
Proteomics

Biophotonics: The big picture

Marcu, L., Boppart, S. A., Hutchinson, M. R., Popp, J. & Wilson, B. C., Feb 1 2018, In : Journal of Biomedical Optics. 23, 2, 021103

Research output: Contribution to journalArticle

physical sciences
microbalances
Direction compound

Biophysics of Tumor Microenvironment and Cancer Metastasis - A Mini Review

Emon, B., Bauer, J., Jain, Y., Jung, B. & Saif, T., Jan 1 2018, In : Computational and Structural Biotechnology Journal. 16, p. 279-287 9 p.

Research output: Contribution to journalReview article

Biophysics
Tumor Microenvironment
Tumors
Cells
Neoplasm Metastasis

Bioprocess engineering for biohythane production from low-grade waste biomass: technical challenges towards scale up

Liu, Z., Si, B., Li, J., He, J., Zhang, C., Lu, Y., Zhang, Y. & Xing, X. H., Apr 1 2018, In : Current Opinion in Biotechnology. 50, p. 25-31 7 p.

Research output: Contribution to journalReview article

Biomass
Fermentation
Biological Phenomena
Biofuels
Biogas

Breaking the Axial Diffraction Limit: A Guide to Axial Super-Resolution Fluorescence Microscopy

Liu, W., Toussaint, K. C., Okoro, C., Zhu, D., Chen, Y., Kuang, C. & Liu, X., Jan 1 2018, (Accepted/In press) In : Laser and Photonics Reviews.

Research output: Contribution to journalArticle

Fluorescence microscopy
Diffraction
microscopy
fluorescence
diffraction

CAMP, Ca2+, pHi, and NO Regulate H-like Cation Channels That Underlie Feeding and Locomotion in the Predatory Sea Slug Pleurobranchaea californica

Green, D. J., Huang, R. C., Sudlow, L., Hatcher, N., Potgieter, K., McCrohan, C., Lee, C., Romanova, E. V., Sweedler, J. V., Gillette, M. L. U. & Gillette, R., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 1986-1993 8 p.

Research output: Contribution to journalReview article

Pleurobranchaea
Disease control
Gastropoda
Locomotion
Nitric Oxide Synthase