Research Output 1970 2019

2019

13C-lutein is differentially distributed in tissues of an adult female rhesus macaque following a single oral administration: a pilot study

Jeon, S., Li, Q., Rubakhin, S., Sweedler, J. V., Smith, J. W., Neuringer, M., Kuchan, M. & Erdman, J. W., Jan 1 2019, In : Nutrition Research. 61, p. 102-108 7 p.

Research output: Contribution to journalArticle

Lutein
Macaca mulatta
Oral Administration
Tissue Distribution
Haplorhini

3D-Printed Hydrogel Composites for Predictive Temporal (4D) Cellular Organizations and Patterned Biogenic Mineralization

McCracken, J. M., Rauzan, B. M., Kjellman, J. C. E., Kandel, M. E., Liu, Y. H., Badea, A., Miller, L. A., Rogers, S., Popescu, G. & Nuzzo, R. G., Jan 10 2019, In : Advanced Healthcare Materials. 8, 1, 1800788.

Research output: Contribution to journalArticle

Ink
Hydrogel
Hydrogels
Scaffolds
Organizations

A 27-band snapshot hyperspectral imaging system for label-free tumor detection during image-guided surgery

Blair, S., Garcia, M., Konopka, C., Dobrucki, W. & Gruev, V., Jan 1 2019, Label-Free Biomedical Imaging and Sensing, LBIS 2019. Hayden, O. & Shaked, N. T. (eds.). SPIE, 108900G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10890).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer-Assisted Surgery
surgery
Imaging systems
Surgery
Labels

A clinical trial of intraoperative near-infrared imaging to assess tumor extent and identify residual disease during anterior mediastinal tumor resection

Predina, J. D., Keating, J., Newton, A., Corbett, C., Xia, L., Shin, M., Frenzel Sulyok, L., Deshpande, C., Litzky, L., Nie, S., Kucharczuk, J. C. & Singhal, S., Mar 1 2019, In : Cancer. 125, 5, p. 807-817 11 p.

Research output: Contribution to journalArticle

Clinical Trials
Indocyanine Green
Neoplasms
Phrenic Nerve
Thymoma

A comparison of glenohumeral joint kinematics and muscle activation during standard and geared manual wheelchair mobility

Slavens, B. A., Jahanian, O., Schnorenberg, A. J. & Hsiao-Wecksler, E. T., Aug 1 2019, In : Medical Engineering and Physics. 70, p. 1-8 8 p.

Research output: Contribution to journalArticle

Shoulder Joint
Wheelchairs
Biomechanical Phenomena
Muscle
Kinematics

A comparison of mid-infrared spectral regions on accuracy of tissue classification

Mittal, S. & Bhargava, R., Apr 21 2019, In : Analyst. 144, 8, p. 2635-2642 8 p.

Research output: Contribution to journalArticle

Dermatoglyphics
Tissue
Infrared radiation
Pixels
Breast

A computational model of feedback-mediated hematopoietic stem cell differentiation in vitro

Mahadik, B., Hannon, B. & Harley, B. A., Mar 1 2019, In : PloS one. 14, 3, e0212502.

Research output: Contribution to journalArticle

Open Access
Hematopoietic Stem Cells
Stem cells
cell differentiation
Cell Differentiation
Feedback

Activation of silent biosynthetic gene clusters using transcription factor decoys

Wang, B., Guo, F., Dong, S. H. & Zhao, H., Feb 1 2019, In : Nature chemical biology. 15, 2, p. 111-114 4 p.

Research output: Contribution to journalArticle

Multigene Family
Transcription Factors
Oxazoles
Peptide Synthases
Polyketide Synthases

Advancing point-of-care diagnostics of metabolites through engineering semisynthetic proteins

Zhang, J. J. & Lu, Y., Apr 1 2019, In : Clinical Chemistry. 65, 4, p. 507-509 3 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Protein Engineering
Metabolites
Proteins

Advancing the Fields of Measurement Science with Partnerships and Awards

Sweedler, J. V., Apr 2 2019, In : Analytical chemistry. 91, 7, 1 p.

Research output: Contribution to journalEditorial

A fully automated, faster noise rejection approach to increasing the analytical capability of chemical imaging for digital histopathology

Gupta, S., Mittal, S., Kajdacsy-Balla, A., Bhargava, R. & Bajaj, C., Apr 1 2019, In : PloS one. 14, 4, e0205219.

Research output: Contribution to journalArticle

Open Access
histopathology
Noise
image analysis
Imaging techniques
Signal to noise ratio

A gene cluster for taurine sulfur assimilation in an anaerobic human gut bacterium

Xing, M., Wei, Y., Hua, G., Li, M., Nanjaraj Urs, A. N., Wang, F., Hu, Y., Zhai, W., Liu, Y., Ang, E. L., Zhao, H. & Zhang, Y., Aug 15 2019, In : Biochemical Journal. 476, 15, p. 2271-2279 9 p.

Research output: Contribution to journalArticle

Taurine
Multigene Family
Sulfur
Bacteria
Genes

Allosteric Interactions in Human Cytochrome P450 CYP3A4: The Role of Phenylalanine 213

Denisov, I. G., Grinkova, Y. V., Nandigrami, P., Shekhar, M., Tajkhorshid, E. & Sligar, S., Mar 12 2019, In : Biochemistry. 58, 10, p. 1411-1422 12 p.

Research output: Contribution to journalArticle

Cytochrome P-450 CYP3A
Phenylalanine
Cytochrome P-450 Enzyme System
Progesterone
Carbamazepine

Anaerobic conversion of the hydrothermal liquefaction aqueous phase: Fate of organics and intensification with granule activated carbon/ozone pretreatment

Si, B., Yang, L., Zhou, X., Watson, J., Tommaso, G., Chen, W. T., Liao, Q., Duan, N., Liu, Z. & Zhang, Y., Jan 1 2019, In : Green Chemistry. 21, 6, p. 1305-1318 14 p.

Research output: Contribution to journalArticle

Ozone
Liquefaction
liquefaction
Activated carbon
activated carbon

Analysis of high Mg-incorporation into GaN via PAMBE modulation doping and molecular dynamics simulations

Ismail, F. H., Landi, M., Kelly, F. P. & Kim, K., Jan 1 2019.

Research output: Contribution to conferencePaper

Molecular dynamics
Doping (additives)
Modulation
Computer simulation
Secondary ion mass spectrometry

Analysis of Paper-Based Colorimetric Assays with a Smartphone Spectrometer

Woodburn, E. V., Long, K. D. & Cunningham, B. T., Jan 15 2019, In : IEEE Sensors Journal. 19, 2, p. 508-514 7 p., 8494768.

Research output: Contribution to journalArticle

Smartphones
Spectrometers
Assays
strip
Cameras

A NIR Light Gated DNA Nanodevice for Spatiotemporally Controlled Imaging of MicroRNA in Cells and Animals

Zhao, J., Chu, H., Zhao, Y., Lu, Y. & Li, L., May 1 2019, In : Journal of the American Chemical Society. 141, 17, p. 7056-7062 7 p.

Research output: Contribution to journalArticle

MicroRNAs
Animals
DNA
Imaging techniques
Light

Anodized/etched and dis treated ti surfaces to promote bone formation

Mesa, A., Montes, R., Patiño, E., Alzate, J. F., Civantos, A., Balcázar, N., Pavón, J. J. & Allain, J. P., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Osteogenesis
Bone Morphogenetic Protein 2
Bone
Titanium
Hazardous Waste

Anomalous scaling of flexural phonon damping in nanoresonators with confined fluid

De, S. & Aluru, N. R., Dec 1 2019, In : Microsystems and Nanoengineering. 5, 1, 2.

Research output: Contribution to journalArticle

Damping
damping
scaling
Fluids
fluids

A novel technique for in situ uniaxial tests of self-assembled soft biomaterials

Elhebeary, M., Emon, M. A. B., Aydin, O. & Saif, M. T. A., Jan 1 2019, In : Lab on a chip. 19, 7, p. 1153-1161 9 p.

Research output: Contribution to journalArticle

Biocompatible Materials
Biomaterials
Tissue
Collagen
Electric Stimulation

A pathway for isethionate dissimilation in Bacillus krulwichiae

Tong, Y., Wei, Y., Hu, Y., Ang, E. L., Zhao, H. & Zhang, Y., Jan 1 2019, In : Applied and environmental microbiology. 85, 15, e00793-19.

Research output: Contribution to journalArticle

Bacillus (bacteria)
Bacillus
Bacteria
bacterium
bacteria

Aqueous acid-based synthesis of lead-free tin halide perovskites with near-unity photoluminescence quantum efficiency

Wang, A., Guo, Y., Zhou, Z., Niu, X., Wang, Y., Muhammad, F., Li, H., Zhang, T., Wang, J., Nie, S. & Deng, Z., Jan 1 2019, In : Chemical Science. 10, 17, p. 4573-4579 7 p.

Research output: Contribution to journalArticle

Open Access
Tin
Quantum efficiency
Photoluminescence
Acids
Quantum yield

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access
maize
corn
vapor pressure
water
water use efficiency

A subtype of oral, laryngeal, esophageal, and lung, squamous cell carcinoma with high levels of TrkB-T1 neurotrophin receptor mRNA

Zhou, Y., Sinha, S., Schwartz, J. L. & Adami, G. R., Jun 20 2019, In : BMC Cancer. 19, 1, 607.

Research output: Contribution to journalArticle

Open Access
Nerve Growth Factor Receptors
Squamous Cell Carcinoma
Lung
Messenger RNA
Neoplasms

Author Correction: Building a global alliance of biofoundries (Nature Communications, (2019), 10, 1, (2040), 10.1038/s41467-019-10079-2)

Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., Bell, D. J., Feuvre, R. L., Friedman, D. C., Fu, X., Gold, N. D., Herrgård, M. J., Holowko, M. B., Johnson, J. R., Johnson, R. A., Keasling, J. D., Kitney, R. I., Kondo, A., Liu, C., Martin, V. J. J. & 16 others, Menolascina, F., Ogino, C., Patron, N. J., Pavan, M., Poh, C. L., Pretorius, I. S., Rosser, S. J., Scrutton, N. S., Storch, M., Tekotte, H., Travnik, E., Vickers, C. E., Yew, W. S., Yuan, Y., Zhao, H. & Freemont, P. S., Dec 1 2019, In : Nature communications. 10, 1, 3132.

Research output: Contribution to journalComment/debate

Open Access
foundries
Queensland
Foundries
communication
Genome

Automated sensorless single-shot closed-loop adaptive optics microscopy with feedback from computational adaptive optics

Iyer, R. R., Liu, Y. Z. & Boppart, S. A., Apr 29 2019, In : Optics Express. 27, 9, p. 12998-13014 17 p.

Research output: Contribution to journalArticle

adaptive optics
shot
microscopy
deformable mirrors
aberration

Automatic curation of sports highlights using multimodal excitement features

Merler, M., Mac, K. N. C., Joshi, D., Nguyen, Q. B., Hammer, S., Kent, J., Xiong, J., Do, M. N., Smith, J. R. & Feris, R. S., May 1 2019, In : IEEE Transactions on Multimedia. 21, 5, p. 1147-1160 14 p., 8491305.

Research output: Contribution to journalArticle

Reels
Sports
Electric fuses
Metadata
Classifiers

Avoiding a Retraction: Some Simple Guidelines on What NOT to Do

Sweedler, J. V., Aug 6 2019, In : Analytical chemistry. 91, 15, p. 9331-9332 2 p.

Research output: Contribution to journalEditorial

Bacterial expression of membrane-associated cytochrome P450s and their activity assay in nanodiscs

Maroutsos, D., Huff, H. & Das, A., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 47-72 26 p. (Methods in Molecular Biology; vol. 1927).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cytochromes
Membranes
Cytochrome P-450 Enzyme System
Bacteria
Paclitaxel

Balancing biofunctional and biomechanical properties using porous titanium reinforced by carbon nanotubes

Pavón, J. J., López, D., Mondragón, F., Gallego, J., Arias, S. L., Luitjohan, K., Holybee, B., Torres, Y., Rodríguez, J. A., Echeverry-Rendón, M., Civantos, A. & Allain, J. P., Apr 1 2019, In : Journal of Biomedical Materials Research - Part A. 107, 4, p. 719-731 13 p.

Research output: Contribution to journalArticle

Carbon Nanotubes
Titanium
Carbon nanotubes
Strength of materials
Nanocomposites

Biochemical and structural investigation of sulfoacetaldehyde reductase from Klebsiella oxytoca

Zhou, Y., Wei, Y., Lin, L., Xu, T., Ang, E. L., Zhao, H., Yuchi, Z. & Zhang, Y., Jan 1 2019, In : Biochemical Journal. 476, 4, p. 733-746 14 p.

Research output: Contribution to journalArticle

Klebsiella oxytoca
Oxidoreductases
Taurine
NADP
Tail

Biochemical and structural investigation of taurine:2-oxoglutarate aminotransferase from Bifidobacterium kashiwanohense

Li, M., Wei, Y., Yin, J., Lin, L., Zhou, Y., Hua, G., Cao, P., Ang, E. L., Zhao, H., Yuchi, Z. & Zhang, Y., Jan 1 2019, In : Biochemical Journal. 476, 11, p. 1605-1619 15 p.

Research output: Contribution to journalArticle

Bifidobacterium
Taurine
Pyridoxal
Transaminases
Pyridoxal Phosphate

Biodegradable Biliverdin Nanoparticles for Efficient Photoacoustic Imaging

Fathi, P., Knox, H. J., Sar, D., Tripathi, I., Ostadhossein, F., Misra, S. K., Esch, M. B., Chan, J. K. F. & Pan, D., Jul 23 2019, In : ACS Nano. 13, 7, p. 7690-7704 15 p.

Research output: Contribution to journalArticle

Biliverdine
Photoacoustic effect
Nanoparticles
Imaging techniques
nanoparticles

Bioenergy and Biorefinery

Han, S. O., Inui, M. & Jin, Y-S., Jun 1 2019, In : Biotechnology Journal. 14, 6, 1900160.

Research output: Contribution to journalEditorial

Open Access

Biohybrid valveless pump-bot powered by engineered skeletal muscle

Li, Z., Seo, Y., Aydin, O., Elhebeary, M., Kamm, R. D., Kong, H. J. & Taher Saif, M. A., Jan 29 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 5, p. 1543-1548 6 p.

Research output: Contribution to journalArticle

Hydrogel
Skeletal Muscle
Muscles
Microfluidics
Muscle Contraction

Biohythane production of post-hydrothermal liquefaction wastewater: A comparison of two-stage fermentation and catalytic hydrothermal gasification

Si, B., Watson, J., Aierzhati, A., Yang, L., Liu, Z. & Zhang, Y., Feb 1 2019, In : Bioresource Technology. p. 335-342 8 p.

Research output: Contribution to journalArticle

Liquefaction
Gasification
liquefaction
Fermentation
fermentation

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Jan 1 2019, In : GCB Bioenergy.

Research output: Contribution to journalArticle

Open Access
Miscanthus giganteus
Miscanthus sinensis
germplasm
Biomass
biomass

Biomimetic triphasic scaffolds for osteotendinous junction regeneration

Sun Han Chang, R. A., Lee, C. W., Rogers, S. & Harley, B. A., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomimetics
Tendons
Scaffolds (biology)
Regeneration
Hydrogel
Yeast
yeast
ethanol
Ethanol
maize

Biosynthetic Routes for Producing Various Fucosyl-Oligosaccharides

Yun, E. J., Liu, J. J., Lee, J. W., Kwak, S., Yu, S., Kim, K. H. & Jin, Y-S., Feb 15 2019, In : ACS synthetic biology. 8, 2, p. 415-424 10 p.

Research output: Contribution to journalArticle

Oligosaccharides
Fucose
Guanosine Diphosphate Fucose
Prebiotics
Sugars

Biosystems design by directed evolution

Wang, Y., Yu, X. & Zhao, H., Jan 1 2019, In : AIChE Journal. e16716.

Research output: Contribution to journalArticle

Genome
Protein Engineering
Screening
Genetic Testing
Biotransformation

Blind Gain and Phase Calibration via Sparse Spectral Methods

Li, Y., Lee, K. & Bresler, Y., May 1 2019, In : IEEE Transactions on Information Theory. 65, 5, p. 3097-3123 27 p., 8550743.

Research output: Contribution to journalArticle

Calibration
regime
Sensor arrays
Synthetic aperture radar
Inverse problems

Bounding multivariate trigonometric polynomials

Pfister, L. & Bresler, Y., Feb 1 2019, In : IEEE Transactions on Signal Processing. 67, 3, p. 700-707 8 p., 8552451.

Research output: Contribution to journalArticle

Polynomials
Control theory

BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., Beck, J. L. & Whitney, S. M., Apr 1 2019, In : Plant Cell and Environment. 42, 4, p. 1287-1301 15 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
ribulose-bisphosphate carboxylase
Tobacco
tobacco
Growth

Building a global alliance of biofoundries

Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., Bell, D. J., Le Feuvre, R., Friedman, D. C., Fu, X., Gold, N. D., Herrgård, M. J., Holowko, M. B., Johnson, J. R., Johnson, R. A., Keasling, J. D., Kitney, R. I., Kondo, A., Liu, C., Martin, V. J. J. & 16 others, Menolascina, F., Ogino, C., Patron, N. J., Pavan, M., Poh, C. L., Pretorius, I. S., Rosser, S. J., Scrutton, N. S., Storch, M., Tekotte, H., Travnik, E., Vickers, C. E., Yew, W. S., Yuan, Y., Zhao, H. & Freemont, P. S., Dec 1 2019, In : Nature communications. 10, 1, 2040.

Research output: Contribution to journalComment/debate

Open Access
biotechnology
Biotechnology
organisms
Testing
Research

Bulk Protein and Oil Prediction in Soybeans Using Transmission Raman Spectroscopy: A Comparison of Approaches to Optimize Accuracy

Singh, R., Wrobel, T. P., Mukherjee, P., Gryka, M., Kole, M., Harrison, S. & Bhargava, R., Jun 1 2019, In : Applied Spectroscopy. 73, 6, p. 687-697 11 p.

Research output: Contribution to journalArticle

soybeans
Raman spectroscopy
Oils
oils
proteins

Bulk-state and single-particle imaging are central to understanding carbon dot photo-physics and elucidating the effects of precursor composition and reaction temperature

Fathi, P., Khamo, J. S., Huang, X., Srivastava, I., Esch, M. B., Zhang, K. & Pan, D., Apr 1 2019, In : Carbon. 145, p. 572-585 14 p.

Research output: Contribution to journalArticle

Carbon
Physics
Imaging techniques
Chemical analysis
Temperature

Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling

Pignon, C. P., Lundgren, M. R., Osborne, C. P. & Long, S. P., Jan 1 2019, In : Journal of experimental botany. 70, 1, p. 357-365 9 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
C4 photosynthesis
Photosynthesis
ribulose-bisphosphate carboxylase
Chloroplasts

Cadherin Extracellular Domain Clustering in the Absence of Trans-Interactions

Thompson, C. J., Vu, V. H., Leckband, D. E. & Schwartz, D. K., Jan 1 2019, In : Journal of Physical Chemistry Letters. p. 4528-4534 7 p.

Research output: Contribution to journalArticle

Cadherins
Oligomers
Oligomerization
oligomers
Molecules

Cancer Cells Invade Confined Microchannels via a Self-Directed Mesenchymal-to-Amoeboid Transition

Holle, A. W., Govindan Kutty Devi, N., Clar, K., Fan, A., Saif, M. T. A., Kemkemer, R. & Spatz, J. P., Apr 10 2019, In : Nano letters. 19, 4, p. 2280-2290 11 p.

Research output: Contribution to journalArticle

microchannels
Microchannels
cancer
Cells
matrices