Research Output 1967 2020

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Review article
1977

Protein-lipid interactions.

Gennis, R. B., 1977, In : Annual review of biophysics and bioengineering. 6, p. 195-238 44 p.

Research output: Contribution to journalReview article

Physical Chemistry
Myelin Proteins
Apolipoproteins
Micelles
Membrane Lipids
1978

Molecular biology of bacterial membrane lipids.

Cronan, J. E., 1978, In : Annual review of biochemistry. 47, p. 163-189 27 p.

Research output: Contribution to journalReview article

Molecular biology
Cell membranes
Lactose
Membrane Lipids
Escherichia coli
1987

Regulation of messenger RNA stability in eukaryotic cells

Shapiro, D. J., Blume, J. E. & Nielsen, D. A., May 1987, In : BioEssays. 6, 5, p. 221-226 6 p.

Research output: Contribution to journalReview article

RNA Stability
Eukaryotic Cells
Messenger RNA
Degradation
1989

Genetics and regulation of bacterial lipid metabolism

Vanden Boom, T. & Cronan, J. E., Jan 1 1989, In : Annual review of microbiology. 43, p. 317-343 27 p.

Research output: Contribution to journalReview article

Membrane Lipids
Lipid Metabolism
Phospholipids
Fatty Acids
Bacteria

Tissue factor regulation and gene organization.

Morrissey, J. H., Gregory, S. A., Mackman, N. & Edgington, T. S., Dec 1 1989, In : Oxford surveys on eukaryotic genes. 6, p. 67-84 18 p.

Research output: Contribution to journalReview article

Molecular Sequence Data
Gene Expression Regulation
Thromboplastin
Structure-Activity Relationship
Amino Acid Sequence
1992

Bacillus subtilis chemotaxis: a deviation from the Escherichia coli paradigm

Bischoff, D. S. & Ordal, G. W., Jan 1992, In : Molecular Microbiology. 6, 1, p. 23-28 6 p.

Research output: Contribution to journalReview article

Chemotaxis
Bacillus subtilis
Methylation
Escherichia coli
Halobacterium salinarum

Putative zinc finger protein encoded by a conserved chloroplast gene is very likely a subunit of a biotin-dependent carboxylase

Li, S. J. & Cronan, J. E., Dec 1 1992, In : Plant Molecular Biology. 20, 5, p. 759-761 3 p.

Research output: Contribution to journalReview article

biotin carboxylase
Molecular Sequence Data
Chloroplast Genes
Acetyl-CoA Carboxylase
Amino Acid Sequence Homology
Mutagenesis
Mitochondria
Electron Transport Complex IV
Heme
Ion Channels
1993

DNA bending by nuclear receptors.

Nardulli, A. & Shapiro, D. J., Jan 1 1993, In : Receptor. 3, 4, p. 247-255 9 p.

Research output: Contribution to journalReview article

Cytoplasmic and Nuclear Receptors
Transcription
DNA
Response Elements
Estrogens

Expression of maize Adh1 intron mutants in tobacco nuclei

Lou, H., McCullough, A. J. & Schuler, M. A., Mar 1993, In : The Plant Journal. 3, 3, p. 393-403 11 p.

Research output: Contribution to journalReview article

Introns
Zea mays
Tobacco
introns
RNA Splice Sites
1994

Cytochrome P-450 and peroxidase chemistry.

Erman, J. E., Hager, L. P. & Sligar, S., 1994, In : Advances in inorganic biochemistry. 10, p. 71-118 48 p.

Research output: Contribution to journalReview article

Hemeproteins
Peroxidases
Cytochrome P-450 Enzyme System
Peroxidase
Oxidation-Reduction
Electron Transport Complex IV
Cytochromes
Protons
Respiration
Electrons

The cytochrome oxidase superfamily of redox-driven proton pumps

Calhoun, M. W., Thomas, J. W. & Gennis, R. B., Aug 1994, In : Trends in Biochemical Sciences. 19, 8, p. 325-330 6 p.

Research output: Contribution to journalReview article

Proton Pumps
Mutagenesis
Molecular oxygen
Electron Transport Complex IV
Site-Directed Mutagenesis
1995

Chemotaxis in Bacillus subtilis: How bacteria monitor environmental signals

Garrity, L. F. & Ordal, G. W., 1995, In : Pharmacology and Therapeutics. 68, 1, p. 87-104 18 p.

Research output: Contribution to journalReview article

Chemotaxis
Bacillus subtilis
Bacteria
Escherichia coli
Proteins
1996

Escherichia coli as a model for the regulation of dissociable (type II) fatty acid biosynthesis

Rock, C. O. & Cronan, J. E., Jul 12 1996, In : Biochimica et Biophysica Acta - Lipids and Lipid Metabolism. 1302, 1, p. 1-16 16 p.

Research output: Contribution to journalReview article

Type I Fatty Acid Synthase
Type II Fatty Acid Synthase
Biosynthesis
Escherichia coli
Fatty Acids

The role of cytochrome P450 monooxygenases in plant-insect interactions

Schuler, M. A., Dec 1996, In : Plant physiology. 112, 4, p. 1411-1419 9 p.

Research output: Contribution to journalReview article

Plant Physiological Phenomena
plant-insect relations
plant physiology
Mixed Function Oxygenases
cytochrome P-450
1997

Cyclopropane ring formation in membrane lipids of bacteria

Grogan, D. W. & Cronan, J. E., Dec 1 1997, In : Microbiology and Molecular Biology Reviews. 61, 4, p. 429-441 13 p.

Research output: Contribution to journalReview article

Membrane Lipids
Bacteria
Phospholipids
Unsaturated Fatty Acids
Enzymes

Understanding enzymic catalysis: The importance of short, strong hydrogen bonds

Gerlt, J. A., Kreevoy, M. M., Cleland, W. W. & Frey, P. A., Apr 1997, In : Chemistry and Biology. 4, 4, p. 259-267 9 p.

Research output: Contribution to journalReview article

Catalysis
Hydrogen
Hydrogen bonds
Catalytic Domain
Enzymes
1998

FadR, transcriptional co-ordination of metabolic expediency

Cronan, J. E. & Subrahmanyam, S., Sep 2 1998, In : Molecular Microbiology. 29, 4, p. 937-943 7 p.

Research output: Contribution to journalReview article

Fatty Acids
Acetyl Coenzyme A
Phospholipids
Bacteria
Escherichia

The low barrier hydrogen bond in enzymatic catalysis

Cleland, W. W., Frey, P. A. & Gerlt, J. A., Oct 2 1998, In : Journal of Biological Chemistry. 273, 40, p. 25529-25532 4 p.

Research output: Contribution to journalReview article

Serine Endopeptidases
Steroid Isomerases
Triose-Phosphate Isomerase
Racemases and Epimerases
Citrate (si)-Synthase
1999

Aminoacyl-tRNA synthetases: A new image for a classical family

Martinis, S. A., Plateau, P., Cavarelli, J. & Florentz, C., Jul 1999, In : Biochimie. 81, 7, p. 683-700 18 p.

Research output: Contribution to journalReview article

Amino Acyl-tRNA Synthetases
RNA
Aminoacylation
RNA Splicing
Enzymes

Binding energetics of T-cell receptors: Correlation with immunological consequences

Manning, T. C. & Kranz, D. M., Sep 1 1999, In : Immunology Today. 20, 9, p. 417-422 6 p.

Research output: Contribution to journalReview article

T-Cell Antigen Receptor

Mycobacterium tuberculosis phagosome

Deretic, V. & Fratti, R. A., Jan 1 1999, In : Molecular Microbiology. 31, 6, p. 1603-1609 7 p.

Research output: Contribution to journalReview article

Phagosomes
Mycobacterium tuberculosis
Intracellular Membranes
Membrane Fusion
Organelle Biogenesis

The enzymatic biotinylation of proteins: A post-translational modification of exceptional specificity

Chapman-Smith, A. & Cronan, J. E., Sep 1 1999, In : Trends in Biochemical Sciences. 24, 9, p. 359-363 5 p.

Research output: Contribution to journalReview article

Biotinylation
Staphylococcal Protein A
Post Translational Protein Processing
Biotin
Proteins
2000

Novel cofactors via post-translational mocifications of enzyme active sites

Okeley, N. M. & Van Der Donk, W. A., Jul 1 2000, In : Chemistry and Biology. 7, 7, p. R159-R171

Research output: Contribution to journalReview article

Biosynthesis
Post Translational Protein Processing
Catalytic Domain
Enzymes

Proton pumping by cytochrome oxidase: Progress, problems and postulates

Zaslavsky, D. & Gennis, R. B., May 12 2000, In : Biochimica et Biophysica Acta - Bioenergetics. 1458, 1, p. 164-179 16 p.

Research output: Contribution to journalReview article

Electron Transport Complex IV
Protons
Proton transfer
Electrons
Metals
2001

Bacterial fatty acid biosynthesis: Targets for antibacterial drug discovery

Campbell, J. W. & Cronan, J., Oct 29 2001, In : Annual review of microbiology. 55, p. 305-332 28 p.

Research output: Contribution to journalReview article

Drug Discovery
Fatty Acids
Pharmaceutical Preparations
Anti-Bacterial Agents
Bacteria

CD antigens 2001

Mason, D., André, P., Bensussan, A., Buckley, C., Civin, C., Clark, E., De Haas, M., Goyert, S., Hadam, M., Hart, D., Hǒrejší, V., Meuer, S., Morrissey, J., Schwartz-Albiez, R., Shaw, S., Simmons, D., Uguccioni, M., Van Der Schoot, E., Vivier, E. & Zola, H., Dec 21 2001, In : Journal of Leukocyte Biology. 70, 5, p. 685-690 6 p.

Research output: Contribution to journalReview article

CD Antigens
Education
Antibodies

CD antigens 2001

Mason, D., André, P., Bensussan, A., Buckley, C., Civin, C., Clark, E., De Haas, M., Goyert, S., Hadam, M., Hart, D., Hořejší, V., Meuer, S., Morrissey, J., Schwartz-Albiez, R., Shaw, S., Simmons, D., Uguccioni, M., Van Der Schoot, E., Vivier, E. & Zola, H., Aug 23 2001, In : Immunology. 103, 4, p. 401-406 6 p.

Research output: Contribution to journalReview article

CD antigens 2001

Mason, D., André, P., Bensussan, A., Buckley, C., Civin, C., Clark, E., De Haas, M., Goyert, S., Hadam, M., Hart, D., Hořejší, V., Meuer, S., Morrissey, J., Schwartz-Albiez, R., Shaw, S., Simmons, D., Uguccioni, M., Van Der Schoot, E., Vivier, E. & Zola, H., Jan 1 2001, In : International Immunology. 13, 9, p. 1095-1098 4 p.

Research output: Contribution to journalReview article

Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies

Gerlt, J. A. & Babbitt, P. C., Jul 30 2001, In : Annual review of biochemistry. 70, p. 209-246 38 p.

Research output: Contribution to journalReview article

Protein Databases
Enzymes
Enoyl-CoA Hydratase
Amidohydrolases
Reaction intermediates

Tyrosyl radical cofactors

Pesavento, R. P. & van der Donk, W. A., Jan 1 2001, In : Advances in Protein Chemistry. 58, p. 317-385 69 p.

Research output: Contribution to journalReview article

2002
Nucleic Acids
Pressure
Proteins
DNA
Hydrostatic Pressure

High pressure, a tool for exploring heme protein active sites

Hui Bon Hoa, G., McLean, M. A. & Sligar, S. G., Mar 25 2002, In : Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology. 1595, 1-2, p. 297-308 12 p.

Research output: Contribution to journalReview article

Hemeproteins
Cytochromes
Catalytic Domain
Pressure
Camphor 5-Monooxygenase

Mechanistic enzymology of oxygen activation by the cytochromes P450

Makris, T. M., Davydov, R., Denisov, I. G., Hoffman, B. M. & Sligar, S. G., Jan 1 2002, In : Drug Metabolism Reviews. 34, 4, p. 691-708 18 p.

Research output: Contribution to journalReview article

Cytochrome P-450 Enzyme System
Camphor 5-Monooxygenase
Oxygen
Camphor
Xenobiotics

Multi-subunit acetyl-CoA carboxylases

Cronan, J. E. & Waldrop, G. L., Jul 11 2002, In : Progress in Lipid Research. 41, 5, p. 407-435 29 p.

Research output: Contribution to journalReview article

Acetyl-CoA Carboxylase
Carboxylation
Malonyl Coenzyme A
Acetyl Coenzyme A
Mammals

Phospholipid modifications in bacteria

Cronan, J. E., Jan 1 2002, In : Current Opinion in Microbiology. 5, 2, p. 202-205 4 p.

Research output: Contribution to journalReview article

Periplasmic Proteins
Heme
Mycobacterium tuberculosis
Phospholipids
Escherichia coli

The cyclooxygenase reaction mechanism

van der Donk, W. A., Tsai, A. L. & Kulmacz, R. J., Dec 31 2002, In : Biochemistry. 41, 52, p. 15451-15458 8 p.

Research output: Contribution to journalReview article

Prostaglandins G
Molecular Conformation
Cyclooxygenase 1
Cyclooxygenase 2
Prostaglandin-Endoperoxide Synthases

Tissue factor as a proinflammatory agent

Bokarewa, M. I., Morrissey, J. H. & Tarkowski, A., May 13 2002, In : Arthritis Research. 4, 3, p. 190-195 6 p.

Research output: Contribution to journalReview article

Thromboplastin
Monocytes
Inflammation
Chemokines
Arthritis
2003

A model T-cell receptor system for studying memory T-cell development

Chen, J., Eisen, H. N. & Kranz, D. M., Mar 1 2003, In : Microbes and Infection. 5, 3, p. 233-240 8 p.

Research output: Contribution to journalReview article

T-Cell Antigen Receptor
T-Lymphocytes
Clone Cells
Peptides
Antigen Receptors

Bacterial Membrane Lipids: Where Do We Stand?

Cronan, J. E., Nov 20 2003, In : Annual review of microbiology. 57, p. 203-224 22 p.

Research output: Contribution to journalReview article

Membrane Lipids
Phospholipids
Protein Precursors
DNA Replication
Permeability

Comparison of the properties of prostaglandin H synthase-1 and -2

Kulmacz, R. J., Van Der Donk, W. A. & Tsai, A. L., Sep 2003, In : Progress in Lipid Research. 42, 5, p. 377-404 28 p.

Research output: Contribution to journalReview article

Cyclooxygenase 1
Cyclooxygenase 2
Protein Isoforms
Prostaglandin-Endoperoxide Synthases
Biosynthesis

Evolution of function in (β/α)8-barrel enzymes

Gerlt, J. A. & Raushel, F. M., Apr 2003, In : Current Opinion in Chemical Biology. 7, 2, p. 252-264 13 p.

Research output: Contribution to journalReview article

Enzymes
Databases

Functional Genomics of P450s

Schuler, M. A. & Werck-Reichhart, D., Nov 24 2003, In : Annual Review of Plant Biology. 54, p. 629-667 39 p.

Research output: Contribution to journalReview article

Biosynthetic Pathways
Genomics
Mixed Function Oxygenases
biochemical pathways
Physiological Phenomena

How to Find "missing" Genes

Gerlt, J. A., Dec 2003, In : Chemistry and Biology. 10, 12, p. 1141-1142 2 p.

Research output: Contribution to journalReview article

Microbial Genome
Metabolic Networks and Pathways
Genes
Proteins

Recent developments in pyridine nucleotide regeneration

van der Donk, W. A. & Zhao, H., Aug 2003, In : Current Opinion in Biotechnology. 14, 4, p. 421-426 6 p.

Research output: Contribution to journalReview article

Nucleotides
Pyridine
Regeneration
Oxidoreductases
Enzymes

Regeneration of cofactors for use in biocatalysis

Zhao, H. & van der Donk, W. A., Dec 2003, In : Current Opinion in Biotechnology. 14, 6, p. 583-589 7 p.

Research output: Contribution to journalReview article

Biocatalysis
Regeneration
Enzymes
Phosphoadenosine Phosphosulfate
Adenosinetriphosphate

RNA Gel Shift Assays for Analysis of Hormone Control of mRNA Stability

Dodson, R. E., Goolsby, K. M., Acena-Nagel, M., Mao, C. & Shapiro, D. J., Jan 1 2003, In : Methods in enzymology. 364, p. 350-361 12 p.

Research output: Contribution to journalReview article

RNA Stability
Electrophoretic Mobility Shift Assay
Hormones
RNA

TCRs with high affinity for foreign pMHC show self-reactivity

Holler, P. D., Chlewicki, L. K. & Kranz, D. M., Jan 1 2003, In : Nature Immunology. 4, 1, p. 55-62 8 p.

Research output: Contribution to journalReview article

T-Cell Antigen Receptor
Major Histocompatibility Complex
Peptides
T-Lymphocytes
Complementarity Determining Regions
2004

Coupled proton and electron transfer reactions in cytochrome oxidase

Gennis, R. B., Jan 1 2004, In : Frontiers in Bioscience. 9, p. 581-591 11 p.

Research output: Contribution to journalReview article

Electron Transport Complex IV
Protons
Electrons
Membranes
Proton Pumps