Research Output 1969 2020

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2019

Coaction of Electrostatic an Hyrophobic Interactions: Dynamic Constraints on Disorere TrkA Juxtamembrane Domain

Wang, Z., Fan, H., Hu, X., Khamo, J., Diao, J., Zhang, K. & Pogorelov, T. V., Dec 19 2019, In : Journal of Physical Chemistry B. 123, 50, p. 10709-10717 9 p.

Research output: Contribution to journalArticle

Tropomyosin
Electrostatics
Phosphotransferases
electrostatics
Membranes

Co-electrolysis of CO2 and glycerol as a pathway to carbon chemicals with improved technoeconomics due to low electricity consumption

Verma, S., Lu, S. & Kenis, P. J. A., Jun 1 2019, In : Nature Energy. 4, 6, p. 466-474 9 p.

Research output: Contribution to journalArticle

Glycerol
Electrolysis
Carbon
Electricity
Oxygen

Cognitive and neural architecture of decision making competence

Román, F. J., Colom, R., Hillman, C. H., Kramer, A. F., Cohen, N. J. & Barbey, A. K., Oct 1 2019, In : NeuroImage. 199, p. 172-183 12 p.

Research output: Contribution to journalArticle

Mental Competency
Decision Making
Intelligence
Individuality
Vocabulary

Coherent State-Based Path Integral Methodology for Computing the Wigner Phase Space Distribution

Bose, A. & Makri, N., May 16 2019, In : Journal of Physical Chemistry A. 123, 19, p. 4284-4294 11 p.

Research output: Contribution to journalArticle

Hamiltonians
Noise abatement
Monte Carlo methods
Trajectories
Statistics

Collision avoidance in cooperative missions: Bézier surfaces for circumnavigating uncertain speed profiles

Mehdi, S. B., Choe, R. & Hovakimyan, N., Jan 1 2019, In : Journal of Guidance, Control, and Dynamics. 42, 8, p. 1779-1796 18 p.

Research output: Contribution to journalArticle

collision avoidance
Collision Avoidance
Collision avoidance
Collision
collision

Combined Targeting of Estrogen Receptor Alpha and XPO1 Prevent Akt Activation, Remodel Metabolic Pathways and Induce Autophagy to Overcome Tamoxifen Resistance

Kulkoyluoglu-Cotul, E., Smith, B. P., Wrobel, K., Zhao, Y. C., Chen, K. L. A., Hieronymi, K., Imir, O. B., Duong, K., O’Callaghan, C., Mehta, A., Sahoo, S., Haley, B., Chang, H., Landesman, Y. & Madak-Erdogan, Z., Apr 4 2019, In : Cancers. 11, 4, 479.

Research output: Contribution to journalArticle

Open Access
Estrogen Receptor alpha
Autophagy
Tamoxifen
Metabolic Networks and Pathways
Neoplasms

Combined ∆ 9 -tetrahydrocannabinol and moderate alcohol administration: effects on ingestive behaviors in adolescent male rats

Nelson, N. G., Law, W. X., Weingarten, M. J., Carnevale, L. N., Das, A. & Liang, N. C., Feb 14 2019, In : Psychopharmacology. 236, 2, p. 671-684 14 p.

Research output: Contribution to journalArticle

Adolescent Behavior
Dronabinol
Alcohols
Alcohol Drinking
Saccharin

Comparative analysis of brain and fat body gene splicing patterns in the honey bee, Apis mellifera

Kannan, K., Shook, M., Li, Y., Robinson, G. E. & Ma, J., Jan 1 2019, In : G3: Genes, Genomes, Genetics. 9, 4, p. 1055-1063 9 p.

Research output: Contribution to journalArticle

Open Access
Fat Body
Honey
Bees
Alternative Splicing
Brain

Comparison between optical coherence tomographic and histopathologic appearances of artifacts caused by common surgical conditions and instrumentation

Cocca, C. J., Selmic, L. E., Samuelson, J., Huang, P. C., Wang, J. & Boppart, S. A., Nov 1 2019, In : Veterinary Surgery. 48, 8, p. 1361-1371 11 p.

Research output: Contribution to journalArticle

tomography
Optical Coherence Tomography
instrumentation
Artifacts
scalpels

Competition of individual domain folding with inter-domain interaction in WW domain engineered repeat proteins

Dave, K., Gasic, A. G., Cheung, M. S. & Gruebele, M., Jan 1 2019, In : Physical Chemistry Chemical Physics. 21, 44, p. 24393-24405 13 p.

Research output: Contribution to journalArticle

folding
proteins
Agglomeration
Monomers
Proteins

Complete 3D Scene Parsing from an RGBD Image

Zou, C., Guo, R., Li, Z. & Hoiem, D. W., Feb 15 2019, In : International Journal of Computer Vision. 127, 2, p. 143-162 20 p.

Research output: Contribution to journalArticle

Computer vision
Computer aided design
Robotics
Neural networks
Sensors

Complexity of the pediatric trauma care process: implications for multi-level awareness

Wooldridge, A., Carayon, P., Hoonakker, P., Hose, B. Z., Ross, J., Kohler, J. E., Brazelton, T., Eithun, B., Kelly, M. M., Dean, S. M., Rusy, D., Durojaiye, A. & Gurses, A. P., Aug 1 2019, In : Cognition, Technology and Work. 21, 3, p. 397-416 20 p.

Research output: Contribution to journalArticle

Pediatrics
Human engineering
Health care
Large scale systems
Decision making

Computational holographic Maxwellian near-eye display with an expanded eyebox

Chang, C., Cui, W., Park, J. & Gao, L., Dec 1 2019, In : Scientific reports. 9, 1, 18749.

Research output: Contribution to journalArticle

Open Access
Pupil
Liquid Crystals
Retina
Light
Costs and Cost Analysis

Conductivity and lithiophilicity gradients guide lithium deposition to mitigate short circuits

Pu, J., Li, J., Zhang, K., Zhang, T., Li, C., Ma, H., Zhu, J., Braun, P. V., Lu, J. & Zhang, H., Dec 1 2019, In : Nature communications. 10, 1, 1896.

Research output: Contribution to journalArticle

Open Access
short circuits
Lithium
Short circuit currents
dendrites
Anodes

Contextualizing numeric clinical test results for gist comprehension: Implications for EHR patient portals

Morrow, D. G., Azevedo, R. F. L., Garcia-Retamero, R., Hasegawa-Johnson, M. A., Huang, T. S., Schuh, W., Gu, K. & Zhang, Y., Mar 2019, In : Journal of Experimental Psychology: Applied. 25, 1, p. 41-61 21 p.

Research output: Contribution to journalArticle

Electronic Health Records
Self Care
Cholesterol
Patient Portals

Controlling aggregation of cholesterol-modified DNA nanostructures

Ohmann, A., Göpfrich, K., Joshi, H., Thompson, R. F., Sobota, D., Ranson, N. A., Aksimentiev, A. & Keyser, U. F., Dec 2 2019, In : Nucleic acids research. 47, 21, p. 11441-11451 11 p.

Research output: Contribution to journalArticle

Open Access
Nanostructures
Cholesterol
DNA
Nanotechnology
Molecular Dynamics Simulation

Controlling expansion in lithium manganese oxide composite electrodes via surface modification

Çapraz, Rajput, S., Bassett, K. L., Gewirth, A. A., White, S. R. & Sottos, N. R., Jan 1 2019, In : Journal of the Electrochemical Society. 166, 12, p. A2357-A2362

Research output: Contribution to journalArticle

Manganese oxide
Surface treatment
Lithium
Electrodes
Composite materials

Controlling Rotation of Two-Dimensional Material Flakes

Zhu, S., Pochet, P. & Johnson, H. T., Jun 25 2019, In : ACS Nano. 13, 6, p. 6925-6931 7 p.

Research output: Contribution to journalArticle

flakes
interlayers
Electronic equipment
electronics
Electronic properties

Controlling Speciation during CO2 Reduction on Cu-Alloy Electrodes

Chen, X., Henckel, D. A., Nwabara, U. O., Li, Y., Frenkel, A. I., Fister, T. T., Kenis, P. J. A. & Gewirth, A. A., Jan 1 2019, (Accepted/In press) In : ACS Catalysis. p. 672-682 11 p.

Research output: Contribution to journalArticle

Carbon Monoxide
Electrodes
Electrodeposition
Oxides
Raman spectroscopy

Control of lamellar eutectic orientation via template-directed solidification

Kulkarni, A. A., Kohanek, J., Hanson, E., Thornton, K. & Braun, P. V., Mar 2019, In : Acta Materialia. 166, p. 715-722 8 p.

Research output: Contribution to journalArticle

Crystal orientation
Eutectics
Solidification
Heat transfer
Undercooling

Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny

Amato, K. R., Mallott, E. K., McDonald, D., Dominy, N. J., Goldberg, T., Lambert, J. E., Swedell, L., Metcalf, J. L., Gomez, A., Britton, G. A. O., Stumpf, R. M., Leigh, S. R. & Knight, R., Oct 8 2019, In : Genome biology. 20, 1, 201.

Research output: Contribution to journalArticle

Open Access
Cercopithecidae
Microbiota
Phylogeny
Ecology
primate

Correction Factors for δ18O-Derived Global Sea Surface Temperature Reconstructions From Diagenetically Altered Intervals of Coral Skeletal Density Banding

Sivaguru, M., Fouke, K. W., Todorov, L., Kingsford, M. J., Fouke, K. E., Trop, J. M. & Fouke, B. W., Jun 18 2019, In : Frontiers in Marine Science. 6, JUN, 306.

Research output: Contribution to journalArticle

Open Access
surface temperature
corals
coral
sea surface temperature
aragonite

Correlated evolution of nest and egg characteristics in birds

Nagy, J., Hauber, M. E., Hartley, I. R. & Mainwaring, M. C., Dec 2019, In : Animal Behaviour. 158, p. 211-225 15 p.

Research output: Contribution to journalArticle

egg quality
nest
nests
egg
bird

Counting growth factors in single cells with infrared quantum dots to measure discrete stimulation distributions

Le, P., Lim, S. J., Baculis, B. C., Chung, H. J., Kilian, K. A. & Smith, A. M., Dec 1 2019, In : Nature communications. 10, 1, 909.

Research output: Contribution to journalArticle

Open Access
Quantum Dots
stimulation
Semiconductor quantum dots
Intercellular Signaling Peptides and Proteins
counting

Coupling point defects and potential energy surface exploration

McGuigan, B. C., Johnson, H. T. & Pochet, P., Aug 2019, In : Computational Materials Science. 166, p. 1-8 8 p.

Research output: Contribution to journalArticle

Potential Energy Surface
Point Defects
Potential energy surfaces
Point defects
point defects

Critical Knowledge Gaps in Mass Transport through Single-Digit Nanopores: A Review and Perspective

Faucher, S., Aluru, N. R., Bazant, M. Z., Blankschtein, D., Brozena, A. H., Cumings, J., Pedro De Souza, J., Elimelech, M., Epsztein, R., Fourkas, J. T., Rajan, A. G., Kulik, H. J., Levy, A., Majumdar, A., Martin, C., McEldrew, M., Misra, R. P., Noy, A., Pham, T. A., Reed, M. & 4 others, Schwegler, E., Siwy, Z., Wang, Y. & Strano, M., Sep 5 2019, In : Journal of Physical Chemistry C. 123, 35, p. 21309-21326 18 p.

Research output: Contribution to journalArticle

Nanopores
digits
Mass transfer
porosity
water treatment

Critical Phenomena in the Temperature-Pressure-Crowding Phase Diagram of a Protein

Gasic, A. G., Boob, M. M., Prigozhin, M. B., Homouz, D., Daugherty, C. M., Gruebele, M. & Cheung, M. S., Nov 18 2019, In : Physical Review X. 9, 4, 041035.

Research output: Contribution to journalArticle

Open Access
crowding
phase diagrams
proteins
critical point
integrity

Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge

Saul, M. C., Blatti, C., Yang, W., Bukhari, S. A., Shpigler, H. Y., Troy, J. M., Seward, C. H., Sloofman, L., Chandrasekaran, S., Bell, A. M., Stubbs, L., Robinson, G. E., Zhao, S. D. & Sinha, S., Jan 2019, In : Genes, Brain and Behavior. p. e12502

Research output: Contribution to journalArticle

Systems Analysis
Synaptic Transmission
Genetic Phenomena
Genes
Smegmamorpha

Cross-type biomedical named entity recognition with deep multi-task learning

Wang, X., Zhang, Y., Ren, X., Zhang, Y., Zitnik, M., Shang, J., Langlotz, C. & Han, J., May 15 2019, In : Bioinformatics. 35, 10, p. 1745-1752 8 p.

Research output: Contribution to journalArticle

Multi-task Learning
Named Entity Recognition
Learning
Labeling
Benchmarking

CuGaS 2 -CuInE 2 (E = S, Se) Colloidal Nanorod Heterostructures

Oh, N., Keating, L. P., Drake, G. A. & Shim, M., Mar 26 2019, In : Chemistry of Materials. 31, 6, p. 1973-1980 8 p.

Research output: Contribution to journalArticle

Nanorods
Heterojunctions
Photoluminescence
Brushes
Optical properties

Cupredoxin engineered upconversion nanoparticles for ratiometric luminescence sensing of Cu2+

Liu, C., Yu, Y., Chen, D., Zhao, J., Yu, Y., Li, L. & Lu, Y., Jan 1 2019, In : Nanoscale Advances. 1, 7, p. 2580-2585 6 p.

Research output: Contribution to journalArticle

Open Access
Luminescence
luminescence
Nanoparticles
nanoparticles
Azurin

Data-driven elasticity imaging using cartesian neural network constitutive models and the autoprogressive method

Hoerig, C., Ghaboussi, J. & Insana, M., May 2019, In : IEEE Transactions on Medical Imaging. 38, 5, p. 1150-1160 11 p., 8522049.

Research output: Contribution to journalArticle

Neural Networks (Computer)
Elasticity
Constitutive models
Neural networks
Imaging techniques

Data-driven pricing for sensing effort elicitation in mobile crowd sensing systems

Jin, H., He, B., Su, L., Nahrstedt, K. & Wang, X., Dec 2019, In : IEEE/ACM Transactions on Networking. 27, 6, p. 2208-2221 14 p., 8894398.

Research output: Contribution to journalArticle

Costs
Mobile devices
Agglomeration

Data-theoretic methodology and computational platform to quantify organizational factors in socio-technical risk analysis

Pence, J., Sakurahara, T., Zhu, X., Mohaghegh, Z., Ertem, M., Ostroff, C. & Kee, E., May 2019, In : Reliability Engineering and System Safety. 185, p. 240-260 21 p.

Research output: Contribution to journalArticle

Risk analysis
Risk assessment
Reliability analysis
Nuclear power plants
Sensitivity analysis

Debiasing-based noise suppression for ultrafast ultrasound microvessel imaging

Huang, C., Song, P., Gong, P., Trzasko, J. D., Manduca, A. & Chen, S., Aug 2019, In : IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control. 66, 8, p. 1281-1291 11 p., 8720262.

Research output: Contribution to journalArticle

Acoustic noise
Ultrasonics
retarding
Imaging techniques
decomposition
Open Access
Helium
Tungsten
titanium carbides
Titanium carbide
Surface morphology

Decision-driven scheduling

Kim, J. E., Abdelzaher, T., Sha, L., Bar-Noy, A., Hobbs, R. L. & Dron, W., Jul 15 2019, In : Real-Time Systems. 55, 3, p. 514-551 38 p.

Research output: Contribution to journalArticle

Event-driven
Scheduling
Sensor
Periodic Tasks
Sensors

Declining ages at menarche in an agrarian rural region of Poland

Rogers, M. P., Lee, K. M. N., Galbarczyk, A., Klimek, M., Klein, L. D., Zabłocka-Słowińska, K., Jasienska, G. & Clancy, K. B. H., Jan 1 2019, (Accepted/In press) In : American Journal of Human Biology. e23362.

Research output: Contribution to journalArticle

menarche
Menarche
Poland
rural areas
rural area

Defects in Self-Assembled Monolayers on Nanoparticles Prompt Phospholipid Extraction and Bilayer-Curvature-Dependent Deformations

Chong, G., Foreman-Ortiz, I. U., Wu, M., Bautista, A., Murphy, C. J., Pedersen, J. A. & Hernandez, R., Jan 1 2019, In : Journal of Physical Chemistry C.

Research output: Contribution to journalArticle

Phospholipids
Self assembled monolayers
lipids
curvature
Nanoparticles

Dependent relevance determination for smooth and structured sparse regression

Wu, A., Koyejo, O. O. & Pillow, J., May 1 2019, In : Journal of Machine Learning Research. 20

Research output: Contribution to journalArticle

Regression
Laplace Approximation
Dependent
Monte Carlo Markov Chain
Convex Relaxation

Depressive Symptoms as a Predictor of Memory Complaints in the PRISM Sample

Yoon, J. S., Charness, N., Boot, W. R., Czaja, S. J. & Rogers, W. A., Jan 10 2019, In : Journals of Gerontology - Series B Psychological Sciences and Social Sciences. 74, 2, p. 254-263 10 p.

Research output: Contribution to journalArticle

complaint
Depression
Cognition
questionnaire
social management
Plastics
Cracks
Acrylonitrile
Styrene
Butadiene

Designing and transforming yield-stress fluids

Nelson, A. Z., Schweizer, K. S., Rauzan, B. M., Nuzzo, R. G., Vermant, J. & Ewoldt, R. H., Oct 2019, In : Current Opinion in Solid State and Materials Science. 23, 5, 100758.

Research output: Contribution to journalArticle

Yield stress
Fluids
Functional materials
Materials science
Printing

Designing bioactive porous titanium interfaces to balance mechanical properties and in vitro cells behavior towards increased osseointegration

Civantos, A., Domínguez, C., Pino, R. J., Setti, G., Pavón, J. J., Martínez-Campos, E., Garcia Garcia, F. J., Rodríguez, J. A., Allain, J. P. & Torres, Y., Jun 25 2019, In : Surface and Coatings Technology. 368, p. 162-174 13 p.

Research output: Contribution to journalArticle

activity (biology)
Titanium
Bone
titanium
mechanical properties

Designing Electrostatic Interactions via Polyelectrolyte Monomer Sequence

Lytle, T. K., Chang, L. W., Markiewicz, N., Perry, S. L. & Sing, C. E., Apr 24 2019, In : ACS Central Science. 5, 4, p. 709-718 10 p.

Research output: Contribution to journalArticle

Open Access
Coulomb interactions
Polyelectrolytes
Monomers
Phase behavior
Polymers

Designing Nanostructured Ti6Al4V Bioactive Interfaces with Directed Irradiation Synthesis toward Cell Stimulation to Promote Host-Tissue-Implant Integration

Civantos, A., Barnwell, A., Shetty, A. R., Pavón, J. J., El-Atwani, O., Arias, S. L., Lang, E., Reece, L. M., Chen, M. & Allain, J. P., Jul 8 2019, In : ACS Biomaterials Science and Engineering. 5, 7, p. 3325-3339 15 p.

Research output: Contribution to journalArticle

Irradiation
Tissue
Biocompatible Materials
Biomaterials
Ions

Design of anapole mode electromagnetic field enhancement structures for biosensing applications

Sabri, L., Huang, Q., Liu, J. N. & Cunningham, B. T., Jan 1 2019, In : Optics Express. 27, 5, p. 7196-7212 17 p.

Research output: Contribution to journalArticle

electromagnetic fields
electromagnetism
electromagnetic coupling
augmentation
finite difference time domain method

Detecting Majorana modes through Josephson junction ring-quantum dot hybrid architectures

Rodríguez-Mota, R., Vishveshwara, S. & Pereg-Barnea, T., May 2019, In : Journal of Physics and Chemistry of Solids. 128, p. 179-187 9 p.

Research output: Contribution to journalArticle

Laser modes
Josephson junctions
Semiconductor quantum dots
quantum dots
periodic variations

Detecting topological variations of DNA at single-molecule level

Liu, K., Pan, C., Kuhn, A., Nievergelt, A. P., Fantner, G. E., Milenkovic, O. & Radenovic, A., Dec 1 2019, In : Nature communications. 10, 1, 3.

Research output: Contribution to journalArticle

deoxyribonucleic acid
Molecules
DNA
molecules
orifices

Detection of weak near-infrared optical imaging signals under ambient light by optical parametric amplification

Sun, Y., Tu, H., You, S., Zhang, C., Liu, Y. Z. & Boppart, S. A., Sep 1 2019, In : Optics Letters. 44, 17, p. 4391-4394 4 p.

Research output: Contribution to journalArticle

parametric amplifiers
light amplifiers
high gain
photomultiplier tubes
lithium niobates