Research Output 1969 2020

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2019

Quantifying protein dynamics and stability in a living organism

Feng, R., Gruebele, M. & Davis, C. M., Dec 1 2019, In : Nature communications. 10, 1, 1179.

Research output: Contribution to journalArticle

Open Access
Protein Stability
organisms
Fluorescence
Cytology
proteins

Quantitative Histopathology of Stained Tissues using Color Spatial Light Interference Microscopy (cSLIM)

Majeed, H., Keikhosravi, A., Kandel, M. E., Nguyen, T. H., Liu, Y., Kajdacsy-Balla, A., Tangella, K., Eliceiri, K. W. & Popescu, G., Dec 1 2019, In : Scientific reports. 9, 1, 14679.

Research output: Contribution to journalArticle

Open Access
Interference Microscopy
Color
Light
Technology
Refractometry

Quantitative Image Analysis of Fractal-Like Thin Films of Organic Semiconductors

Zhu, W., Mohammadi, E. & Diao, Y., Dec 1 2019, In : Journal of Polymer Science, Part B: Polymer Physics. 57, 23, p. 1622-1634 13 p.

Research output: Contribution to journalArticle

Semiconducting organic compounds
organic semiconductors
image analysis
Fractals
Image analysis

Quantitative Imaging of Organic Ligand Density on Anisotropic Inorganic Nanocrystals

Janicek, B. E., Hinman, J. G., Hinman, J. J., Bae, S. H., Wu, M., Turner, J., Chang, H. H., Park, E., Lawless, R., Suslick, K. S., Murphy, C. J. & Huang, P. Y., Sep 11 2019, In : Nano letters. 19, 9, p. 6308-6314 7 p.

Research output: Contribution to journalArticle

Nanocrystals
nanocrystals
Ligands
Nanoparticles
Imaging techniques

Quantitative phase imaging (QPI) in neuroscience

Hu, C. & Popescu, G., Feb 2019, In : IEEE Journal of Selected Topics in Quantum Electronics. 25, 1, 8458413.

Research output: Contribution to journalArticle

neurology
Imaging techniques
interferometry
figure of merit
imaging techniques

Quantitative phase imaging reveals matrix stiffness-dependent growth and migration of cancer cells

Li, Y., Fanous, M. J., Kilian, K. A. & Popescu, G., Dec 1 2019, In : Scientific reports. 9, 1, 248.

Research output: Contribution to journalArticle

Cell Movement
Growth
Interference Microscopy
Neoplasms
Extracellular Matrix

Quantum-classical path integral with a harmonic treatment of the back-reaction

Wang, F. & Makri, N., May 14 2019, In : Journal of Chemical Physics. 150, 18, 184102.

Research output: Contribution to journalArticle

harmonics
Molecular dynamics
Trajectories
trajectories
molecular dynamics

Quasiclassical Correlation Functions from the Wigner Density Using the Stability Matrix

Bose, A. & Makri, N., May 28 2019, In : Journal of Chemical Information and Modeling. 59, 5, p. 2165-2174 10 p.

Research output: Contribution to journalArticle

Stiffness matrix
Sampling
Hamiltonians
Equations of motion
Mathematical operators

Quasinormal Modes and the Hawking-Unruh Effect in Quantum Hall Systems: Lessons from Black Hole Phenomena

Hegde, S. S., Subramanyan, V., Bradlyn, B. & Vishveshwara, S., Oct 11 2019, In : Physical review letters. 123, 15, 156802.

Research output: Contribution to journalArticle

saddles
scattering
commonality
bears
harmonic oscillators

Rapid and Accurate Determination of Nanopore Ionic Current Using a Steric Exclusion Model

Wilson, J., Sarthak, K., Si, W., Gao, L. & Aksimentiev, A., Mar 22 2019, In : ACS Sensors. 4, 3, p. 634-644 11 p.

Research output: Contribution to journalArticle

Nanopores
exclusion
atomic structure
amino acids
solid state

Rapid Degradation of Poly(lactic acid) with Organometallic Catalysts

Garg, M., White, S. R. & Sottos, N. R., Dec 11 2019, In : ACS Applied Materials and Interfaces. 11, 49, p. 46226-46232 7 p.

Research output: Contribution to journalArticle

Organometallics
Lactic acid
Specific surface area
Degradation
Catalysts

Rat bone properties and their relationship to gait during growth

Song, H., Polk, J. D. & Kersh, M. E., Jan 1 2019, In : Journal of Experimental Biology. 222, 18, jeb203554.

Research output: Contribution to journalArticle

Open Access
gait
Gait
bone
bones
tibia

Rational Design of a Red Fluorescent Sensor for ALDH1A1 Displaying Enhanced Cellular Uptake and Reactivity

Bearrood, T. E., Aguirre-Figueroa, G. & Chan, J., Jan 1 2019, (Accepted/In press) In : Bioconjugate Chemistry.

Research output: Contribution to journalArticle

Aldehyde Dehydrogenase
Stem cells
Aldehydes
Stem Cells
Sensors

Rational Design of Hierarchically Open-Porous Spherical Hybrid Architectures for Lithium-Ion Batteries

Yun, S., Bak, S. M., Kim, S., Yeon, J. S., Kim, M. G., Yang, X. Q., Braun, P. V. & Park, H. S., Feb 7 2019, In : Advanced Energy Materials. 9, 6, 1802816.

Research output: Contribution to journalArticle

Microspheres
Graphite
Oxides
Graphene
Microstructure

Realization of alignment-tolerant grating couplers for z-cut thin-film lithium niobate

Kar, A., Bahadori, M., Gong, S. & Goddard, L. L., Jan 1 2019, In : Optics Express. 27, 11, p. 15856-15867 12 p.

Research output: Contribution to journalArticle

lithium niobates
misalignment
couplers
alignment
gratings

Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology

You, S., Sun, Y., Yang, L., Park, J., Tu, H., Marjanovic, M., Sinha, S. & Boppart, S. A., Dec 17 2019, In : npj Precision Oncology. 3, 1, 33.

Research output: Contribution to journalArticle

Open Access
Histology
Area Under Curve
Neoplasms
Learning
Technology

Recent Trends in Catalytic Polymerizations

Walsh, D. J., Hyatt, M. G., Miller, S. A. & Guironnet, D., Dec 6 2019, In : ACS Catalysis. 9, 12, p. 11153-11188 36 p.

Research output: Contribution to journalArticle

Polymerization
Materials properties
Polymers
Productivity
Costs

Reconfigurable Poly(urea-urethane) Thermoset Based on Hindered Urea Bonds with Triple-Shape-Memory Performance

Jia, Y., Ying, H., Zhang, Y., He, H. & Cheng, J., Jun 2019, In : Macromolecular Chemistry and Physics. 220, 12, 1900148.

Research output: Contribution to journalArticle

urethanes
Urethane
Thermosets
Shape memory effect
ureas

Reconfiguration of brain networks supporting inhibition of emotional challenge

Bartholomew, M. E., Yee, C. M., Heller, W., Miller, G. A. & Spielberg, J. M., Feb 1 2019, In : NeuroImage. 186, p. 350-357 8 p.

Research output: Contribution to journalArticle

Emotions
Brain
Prefrontal Cortex
Aptitude
Arousal

Recovery rheology via rheo-SANS: Application to step strains under out-of-equilibrium conditions

Lee, J. C. W., Porcar, L. & Rogers, S. A., Dec 1 2019, In : AIChE Journal. 65, 12, e16797.

Research output: Contribution to journalArticle

Rheology
Exercise Test
Small Angle Scattering
Recovery
Nonlinear Dynamics
Open Access
Polyelectrolytes
Activated carbon
activated carbon
electrode
Fluxes

Regularized pseudo-phase imaging for inspecting and sensing nanoscale features

Zhu, J., Zhou, R., Zhang, L., Ge, B., Luo, C. & Goddard, L. L., Jan 1 2019, In : Optics Express. 27, 5, p. 6719-6733 15 p.

Research output: Contribution to journalArticle

signal to noise ratios
Rayleigh scattering
hardware
microscopes
microscopy

Regulatory networks in mechanotransduction reveal key genes in promoting cancer cell stemness and proliferation

Huang, W., Hu, H., Zhang, Q., Wu, X., Wei, F., Yang, F., Gan, L., Wang, N., Yang, X. & Guo, A. Y., Oct 17 2019, In : Oncogene. 38, 42, p. 6818-6834 17 p.

Research output: Contribution to journalArticle

Open Access
Cell Proliferation
Genes
Neoplasms
Neoplasm Genes
Membranes

Relations between mode of birth delivery and timing of developmental milestones and adiposity in preadolescence: A retrospective study

Chojnacki, M. R., Holscher, H. D., Balbinot, A. R., Raine, L. B., Biggan, J. R., Walk, A. M., Kramer, A. F., Cohen, N. J., Hillman, C. H. & Khan, N. A., Feb 2019, In : Early Human Development. 129, p. 52-59 8 p.

Research output: Contribution to journalArticle

Adiposity
Retrospective Studies
Parturition
Toilet Training
Emergencies

Relaying of the local enhanced electric-field using stacked gold bowtie nanoantennas

Ding, Q. & Toussaint, K. C., Jun 18 2019, In : Nanotechnology. 30, 36, 365202.

Research output: Contribution to journalArticle

Gold
Electric fields
Nonlinear optics
Metamaterials
Antenna feeders
Spinal Cord Injuries
Reproducibility of Results
Activities of Daily Living
Posture
Outcome Assessment (Health Care)

Repetitive Negative Thought and Executive Dysfunction: An Interactive Pathway to Emotional Distress

Madian, N., Bredemeier, K., Heller, W., Miller, G. A. & Warren, S. L., Apr 1 2019, In : Cognitive Therapy and Research. 43, 2, p. 464-480 17 p.

Research output: Contribution to journalArticle

Executive Function
Depression
Anxiety
Anxiety Disorders
Cognition

Replicability of neural and behavioral measures of tinnitus handicap in civilian and military populations: Preliminary results

Husain, F. T., Schmidt, S. A., Tai, Y., Granato, E. C., Ramos, P., Sherman, P. & Esquivel, C., Apr 2019, In : American journal of audiology. 28, 1S, p. 191-208 18 p.

Research output: Contribution to journalArticle

Tinnitus
Magnetic Resonance Imaging
Population
Parietal Lobe
Magnets

Representational gesturing as an epistemic tool for the development of mechanistic explanatory models

Mathayas, N., Brown, D. E., Wallon, R. C. & Lindgren, R. W., Jul 2019, In : Science Education. 103, 4, p. 1047-1079 33 p.

Research output: Contribution to journalArticle

student
technical language
air
semantics
instruction

Repurposing: Another R to prioritize in data curation

Twidale, M., Blake, C., Souden, M., Stelmack, J. & Kim, J., Jan 1 2019, In : Proceedings of the Association for Information Science and Technology. 56, 1, p. 785-787 3 p.

Research output: Contribution to journalArticle

Group
Values

Repurposing DNA-binding agents as H-bonded organic semiconductors

Zhang, F., Lemaur, V., Choi, W., Kafle, P., Seki, S., Cornil, J., Beljonne, D. & Diao, Y., Dec 1 2019, In : Nature communications. 10, 1, 4217.

Research output: Contribution to journalArticle

Open Access
Semiconductors
Semiconducting organic compounds
organic semiconductors
Hydrogen bonds
Hole mobility

Repurposing Protein Degradation for Optogenetic Modulation of Protein Activities

Mondal, P., Krishnamurthy, V. V., Sharum, S. R., Haack, N., Zhou, H., Cheng, J., Yang, J. & Zhang, K., Nov 15 2019, In : ACS synthetic biology. 8, 11, p. 2585-2592 8 p.

Research output: Contribution to journalArticle

Optogenetics
Proteolysis
Modulation
Proteins
Degradation

Retinoic acid signaling in ovarian folliculogenesis and steroidogenesis

Damdimopoulou, P., Chiang, C. & Flaws, J. A., Aug 2019, In : Reproductive Toxicology. 87, p. 32-41 10 p.

Research output: Contribution to journalArticle

Tretinoin
Retinoids
Ovary
Retinoic Acid Receptors
Physiology

Revealing the Thermodynamic Properties of Elementary Chemical Reactions at the Single-Molecule Level

Liu, X., Chen, T., Jain, P. K. & Xu, W., Jun 27 2019, In : Journal of Physical Chemistry B. 123, 29, p. 6253-6259 7 p.

Research output: Contribution to journalArticle

Chemical reactions
chemical reactions
Thermodynamic properties
thermodynamic properties
Molecules

Reversal shift in phonotactic learning during language production: Evidence for incremental learning

Anderson, N. D., Holmes, E. W., Dell, G. S. & Middleton, E. L., Jun 2019, In : Journal of Memory and Language. 106, p. 135-149 15 p.

Research output: Contribution to journalArticle

Language
Learning
language
learning
evidence

Reversible Bonding of Aromatic Thermosetting Copolyesters for In-Space Assembly

Meyer, J. L., Bakir, M., Lan, P., Economy, J., Jasiuk, I. M., Bonhomme, G. & Polycarpou, A. A., Apr 2019, In : Macromolecular Materials and Engineering. 304, 4, 1800647.

Research output: Contribution to journalArticle

Debonding
Adhesives
Coatings
Transesterification
Substrates

Reversible Conversion Reactions and Small First Cycle Irreversible Capacity Loss in Metal Sulfide-Based Electrodes Enabled by Solid Electrolytes

Kim, S., Choi, J., Bak, S. M., Sang, L., Li, Q., Patra, A. & Braun, P. V., Jul 4 2019, In : Advanced Functional Materials. 29, 27, 1901719.

Research output: Contribution to journalArticle

Solid electrolytes
solid electrolytes
Sulfides
sulfides
Metals

Revisiting 2π phase slip suppression in topological Josephson junctions

Rodríguez-Mota, R., Vishveshwara, S. & Pereg-Barnea, T., Jan 30 2019, In : Physical Review B. 99, 2, 024517.

Research output: Contribution to journalArticle

Josephson junctions
slip
Physics
retarding
Fermions

Reward anticipation and punishment anticipation are instantiated in the brain via opponent mechanisms

Lake, J. I., Spielberg, J. M., Infantolino, Z. P., Crocker, L. D., Yee, C. M., Heller, W. & Miller, G. A., Aug 2019, In : Psychophysiology. 56, 8, e13381.

Research output: Contribution to journalArticle

Punishment
Reward
Brain
Motivation
Cues

Rheological Analysis of the Gelation Kinetics of an Enzyme Cross-linked PEG Hydrogel

Sun Han Chang, R., Lee, J. C. W., Pedron Haba, S., Harley, B. A. & Rogers, S., Jun 10 2019, In : Biomacromolecules. 20, 6, p. 2198-2206 9 p.

Research output: Contribution to journalArticle

Enzyme kinetics
Hydrogel
Gelation
Hydrogels
Polyethylene glycols

Ring polymer dynamics and tumbling-stretch transitions in planar mixed flows

Young, C. D., Qian, J. R., Marvin, M. & Sing, C. E., Jun 10 2019, In : Physical Review E. 99, 6, 062502.

Research output: Contribution to journalArticle

Polymer Dynamics
multiphase flow
Stretch
Polymers
Ring

Robust probabilistic classification applicable to irregularly sampled functional data

Park, Y. & Simpson, D. G., Mar 2019, In : Computational Statistics and Data Analysis. 131, p. 37-49 13 p.

Research output: Contribution to journalArticle

Functional Data
Curve
Classifiers
Irregular Sampling
Bayes Classifier

Robust structured-light depth mapping via recursive decomposition of binary codes

Feng, X. & Gao, L., Jun 1 2019, In : Optical Engineering. 58, 6, 060501.

Research output: Contribution to journalArticle

binary codes
Binary codes
Cameras
Decomposition
decomposition

Room-temperature superionic-phase nanocrystals synthesized with a twinned lattice

Gong, J. & Jain, P. K., Dec 1 2019, In : Nature communications. 10, 1, 3285.

Research output: Contribution to journalArticle

Open Access
Crystal lattices
Nanoparticles
Nanocrystals
nanocrystals
Temperature

Rotation equivariant and invariant neural networks for microscopy image analysis

Chidester, B., Zhou, T., Do, M. N. & Ma, J., Jul 15 2019, In : Bioinformatics. 35, 14, p. i530-i537 btz353.

Research output: Contribution to journalArticle

Open Access
Image Analysis
Microscopy
Equivariant
Image analysis
Microscopic examination

Salt elimination reactions do not always eliminate. Mechanistic study of the reaction of NdCl 3 with sodium N,N-dimethylaminodiboranate

Chang, N. N., Daly, S. R. & Girolami, G. S., Apr 1 2019, In : Polyhedron. 162, p. 52-58 7 p.

Research output: Contribution to journalArticle

elimination
Salts
Sodium
sodium
salts

Sanitary pads and diapers contain higher phthalate contents than those in common commercial plastic products

Park, C. J., Barakat, R., Ulanov, A., Li, Z., Lin, P. C., Chiu, K., Zhou, S., Perez, P., Lee, J., Flaws, J. & Ko, C. M. J., Mar 2019, In : Reproductive Toxicology. 84, p. 114-121 8 p.

Research output: Contribution to journalArticle

Plastic products
Volatile Organic Compounds
Plastics
Diethylhexyl Phthalate
Xylenes

Scalable 360° Video Stream Delivery: Challenges, Solutions, and Opportunities

Zink, M., Sitaraman, R. & Nahrstedt, K., Apr 2019, In : Proceedings of the IEEE. 107, 4, p. 639-650 12 p., 8643410.

Research output: Contribution to journalArticle

Video streaming
Video recording
Augmented reality
Virtual reality
Data structures

Scalable GW software for quasiparticle properties using OpenAtom

Kim, M., Mandal, S., Mikida, E., Chandrasekar, K., Bohm, E., Jain, N., Li, Q., Kanakagiri, R., Martyna, G. J., Kale, L. V. & Ismail-Beigi, S., Nov 2019, In : Computer Physics Communications. 244, p. 427-441 15 p.

Research output: Contribution to journalArticle

Electronic states
Supercomputers
computer programs
Density functional theory
electronics

Scanning electrochemical microscopy with conducting polymer probes: Validation and applications

Claudio-Cintrón, M. A. & Rodriguez Lopez, J., Sep 3 2019, In : Analytica Chimica Acta. 1069, p. 36-46 11 p.

Research output: Contribution to journalArticle

Electrochemical Scanning Microscopy
Conducting polymers
microscopy
Scanning Probe Microscopy
Microscopic examination