Beckman Institute for Advanced Science and Technology

2019

Quantifying protein dynamics and stability in a living organism

Feng, R., Gruebele, M. & Davis, C. M., Dec 1 2019, In : Nature communications. 10, 1, 1179.

Research output: Contribution to journal › Article

Open Access

Protein Stability

organisms

Fluorescence

Cytology

proteins

Quantitative Histopathology of Stained Tissues using Color Spatial Light Interference Microscopy (cSLIM)

Majeed, H., Keikhosravi, A., Kandel, M. E., Nguyen, T. H., Liu, Y., Kajdacsy-Balla, A., Tangella, K., Eliceiri, K. W. & Popescu, G., Dec 1 2019, In : Scientific reports. 9, 1, 14679.

Research output: Contribution to journal › Article

Open Access

Interference Microscopy

Color

Light

Technology

Refractometry

Quantitative Image Analysis of Fractal-Like Thin Films of Organic Semiconductors

Zhu, W., Mohammadi, E. & Diao, Y., Dec 1 2019, In : Journal of Polymer Science, Part B: Polymer Physics. 57, 23, p. 1622-1634 13 p.

Research output: Contribution to journal › Article

Semiconducting organic compounds

organic semiconductors

image analysis

Fractals

Image analysis

Quantitative Imaging of Organic Ligand Density on Anisotropic Inorganic Nanocrystals

Janicek, B. E., Hinman, J. G., Hinman, J. J., Bae, S. H., Wu, M., Turner, J., Chang, H. H., Park, E., Lawless, R., Suslick, K. S., Murphy, C. J. & Huang, P. Y., Sep 11 2019, In : Nano letters. 19, 9, p. 6308-6314 7 p.

Research output: Contribution to journal › Article

Nanocrystals

nanocrystals

Ligands

Nanoparticles

Imaging techniques

Quantitative phase imaging (QPI) in neuroscience

Hu, C. & Popescu, G., Feb 2019, In : IEEE Journal of Selected Topics in Quantum Electronics. 25, 1, 8458413.

Research output: Contribution to journal › Article

neurology

Imaging techniques

interferometry

figure of merit

imaging techniques

Quantitative phase imaging reveals matrix stiffness-dependent growth and migration of cancer cells

Li, Y., Fanous, M. J., Kilian, K. A. & Popescu, G., Dec 1 2019, In : Scientific reports. 9, 1, 248.

Research output: Contribution to journal › Article

Cell Movement

Growth

Interference Microscopy

Neoplasms

Extracellular Matrix

Quantum-classical path integral with a harmonic treatment of the back-reaction

Wang, F. & Makri, N., May 14 2019, In : Journal of Chemical Physics. 150, 18, 184102.

Research output: Contribution to journal › Article

harmonics

Molecular dynamics

Trajectories

trajectories

molecular dynamics

Quasiclassical Correlation Functions from the Wigner Density Using the Stability Matrix

Bose, A. & Makri, N., May 28 2019, In : Journal of Chemical Information and Modeling. 59, 5, p. 2165-2174 10 p.

Research output: Contribution to journal › Article

Stiffness matrix

Sampling

Hamiltonians

Equations of motion

Mathematical operators

Quasinormal Modes and the Hawking-Unruh Effect in Quantum Hall Systems: Lessons from Black Hole Phenomena

Hegde, S. S., Subramanyan, V., Bradlyn, B. & Vishveshwara, S., Oct 11 2019, In : Physical review letters. 123, 15, 156802.

Research output: Contribution to journal › Article

saddles

scattering

commonality

bears

harmonic oscillators

Rapid and Accurate Determination of Nanopore Ionic Current Using a Steric Exclusion Model

Wilson, J., Sarthak, K., Si, W., Gao, L. & Aksimentiev, A., Mar 22 2019, In : ACS Sensors. 4, 3, p. 634-644 11 p.

Research output: Contribution to journal › Article

Nanopores

exclusion

atomic structure

amino acids

solid state

Rapid Degradation of Poly(lactic acid) with Organometallic Catalysts

Garg, M., White, S. R. & Sottos, N. R., Dec 11 2019, In : ACS Applied Materials and Interfaces. 11, 49, p. 46226-46232 7 p.

Research output: Contribution to journal › Article

Organometallics

Lactic acid

Specific surface area

Degradation

Catalysts

Rat bone properties and their relationship to gait during growth

Song, H., Polk, J. D. & Kersh, M. E., Jan 1 2019, In : Journal of Experimental Biology. 222, 18, jeb203554.

Research output: Contribution to journal › Article

Open Access

gait

Gait

bone

bones

tibia

Rational Design of a Red Fluorescent Sensor for ALDH1A1 Displaying Enhanced Cellular Uptake and Reactivity

Bearrood, T. E., Aguirre-Figueroa, G. & Chan, J., Jan 1 2019, (Accepted/In press) In : Bioconjugate Chemistry.

Research output: Contribution to journal › Article

Aldehyde Dehydrogenase

Stem cells

Aldehydes

Stem Cells

Sensors

Rational Design of Hierarchically Open-Porous Spherical Hybrid Architectures for Lithium-Ion Batteries

Yun, S., Bak, S. M., Kim, S., Yeon, J. S., Kim, M. G., Yang, X. Q., Braun, P. V. & Park, H. S., Feb 7 2019, In : Advanced Energy Materials. 9, 6, 1802816.

Research output: Contribution to journal › Article

Microspheres

Graphite

Oxides

Graphene

Microstructure

Realization of alignment-tolerant grating couplers for z-cut thin-film lithium niobate

Kar, A., Bahadori, M., Gong, S. & Goddard, L. L., Jan 1 2019, In : Optics Express. 27, 11, p. 15856-15867 12 p.

Research output: Contribution to journal › Article

lithium niobates

misalignment

couplers

alignment

gratings

Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology

You, S., Sun, Y., Yang, L., Park, J., Tu, H., Marjanovic, M., Sinha, S. & Boppart, S. A., Dec 17 2019, In : npj Precision Oncology. 3, 1, 33.

Research output: Contribution to journal › Article

Open Access

Histology

Area Under Curve

Neoplasms

Learning

Technology

Recent Trends in Catalytic Polymerizations

Walsh, D. J., Hyatt, M. G., Miller, S. A. & Guironnet, D., Dec 6 2019, In : ACS Catalysis. 9, 12, p. 11153-11188 36 p.

Research output: Contribution to journal › Article

Polymerization

Materials properties

Polymers

Productivity

Costs

Reconfigurable Poly(urea-urethane) Thermoset Based on Hindered Urea Bonds with Triple-Shape-Memory Performance

Jia, Y., Ying, H., Zhang, Y., He, H. & Cheng, J., Jun 2019, In : Macromolecular Chemistry and Physics. 220, 12, 1900148.

Research output: Contribution to journal › Article

urethanes

Urethane

Thermosets

Shape memory effect

ureas

Reconfiguration of brain networks supporting inhibition of emotional challenge

Bartholomew, M. E., Yee, C. M., Heller, W., Miller, G. A. & Spielberg, J. M., Feb 1 2019, In : NeuroImage. 186, p. 350-357 8 p.

Research output: Contribution to journal › Article

Emotions

Brain

Prefrontal Cortex

Aptitude

Arousal

Recovery rheology via rheo-SANS: Application to step strains under out-of-equilibrium conditions

Lee, J. C. W., Porcar, L. & Rogers, S. A., Dec 1 2019, In : AIChE Journal. 65, 12, e16797.

Research output: Contribution to journal › Article

Rheology

Exercise Test

Small Angle Scattering

Recovery

Nonlinear Dynamics

Reducing impedance to ionic flux in capacitive deionization with Bi-tortuous activated carbon electrodes coated with asymmetrically charged polyelectrolytes

Bhat, A. P., Reale, E. R., del Cerro, M., Smith, K. C. & Cusick, R., Apr 1 2019, In : Water Research X. 3, 100027.

Research output: Contribution to journal › Article

Open Access

Polyelectrolytes

Activated carbon

activated carbon

electrode

Fluxes

Regularized pseudo-phase imaging for inspecting and sensing nanoscale features

Zhu, J., Zhou, R., Zhang, L., Ge, B., Luo, C. & Goddard, L. L., Jan 1 2019, In : Optics Express. 27, 5, p. 6719-6733 15 p.

Research output: Contribution to journal › Article

signal to noise ratios

Rayleigh scattering

hardware

microscopes

microscopy

Regulatory networks in mechanotransduction reveal key genes in promoting cancer cell stemness and proliferation

Huang, W., Hu, H., Zhang, Q., Wu, X., Wei, F., Yang, F., Gan, L., Wang, N., Yang, X. & Guo, A. Y., Oct 17 2019, In : Oncogene. 38, 42, p. 6818-6834 17 p.

Research output: Contribution to journal › Article

Open Access

Cell Proliferation

Genes

Neoplasms

Neoplasm Genes

Membranes

Relations between mode of birth delivery and timing of developmental milestones and adiposity in preadolescence: A retrospective study

Chojnacki, M. R., Holscher, H. D., Balbinot, A. R., Raine, L. B., Biggan, J. R., Walk, A. M., Kramer, A. F., Cohen, N. J., Hillman, C. H. & Khan, N. A., Feb 2019, In : Early Human Development. 129, p. 52-59 8 p.

Research output: Contribution to journal › Article

Adiposity

Retrospective Studies

Parturition

Toilet Training

Emergencies

Relaying of the local enhanced electric-field using stacked gold bowtie nanoantennas

Ding, Q. & Toussaint, K. C., Jun 18 2019, In : Nanotechnology. 30, 36, 365202.

Research output: Contribution to journal › Article

Gold

Electric fields

Nonlinear optics

Metamaterials

Antenna feeders

Reliability and validity of the function in sitting test among non-ambulatory individuals with spinal cord injury

Abou, L., Sung, J. H., Sosnoff, J. J. & Rice, L. A., Jan 1 2019, In : Journal of Spinal Cord Medicine.

Research output: Contribution to journal › Article

Spinal Cord Injuries

Reproducibility of Results

Activities of Daily Living

Posture

Outcome Assessment (Health Care)

Repetitive Negative Thought and Executive Dysfunction: An Interactive Pathway to Emotional Distress

Madian, N., Bredemeier, K., Heller, W., Miller, G. A. & Warren, S. L., Apr 1 2019, In : Cognitive Therapy and Research. 43, 2, p. 464-480 17 p.

Research output: Contribution to journal › Article

Executive Function

Depression

Anxiety

Anxiety Disorders

Cognition

Replicability of neural and behavioral measures of tinnitus handicap in civilian and military populations: Preliminary results

Husain, F. T., Schmidt, S. A., Tai, Y., Granato, E. C., Ramos, P., Sherman, P. & Esquivel, C., Apr 2019, In : American journal of audiology. 28, 1S, p. 191-208 18 p.

Research output: Contribution to journal › Article

Tinnitus

Magnetic Resonance Imaging

Population

Parietal Lobe

Magnets

Representational gesturing as an epistemic tool for the development of mechanistic explanatory models

Mathayas, N., Brown, D. E., Wallon, R. C. & Lindgren, R. W., Jul 2019, In : Science Education. 103, 4, p. 1047-1079 33 p.

Research output: Contribution to journal › Article

student

technical language

air

semantics

instruction

Repurposing: Another R to prioritize in data curation

Twidale, M., Blake, C., Souden, M., Stelmack, J. & Kim, J., Jan 1 2019, In : Proceedings of the Association for Information Science and Technology. 56, 1, p. 785-787 3 p.

Research output: Contribution to journal › Article

Group

Values

Repurposing DNA-binding agents as H-bonded organic semiconductors

Zhang, F., Lemaur, V., Choi, W., Kafle, P., Seki, S., Cornil, J., Beljonne, D. & Diao, Y., Dec 1 2019, In : Nature communications. 10, 1, 4217.

Research output: Contribution to journal › Article

Open Access

Semiconductors

Semiconducting organic compounds

organic semiconductors

Hydrogen bonds

Hole mobility

Repurposing Protein Degradation for Optogenetic Modulation of Protein Activities

Mondal, P., Krishnamurthy, V. V., Sharum, S. R., Haack, N., Zhou, H., Cheng, J., Yang, J. & Zhang, K., Nov 15 2019, In : ACS synthetic biology. 8, 11, p. 2585-2592 8 p.

Research output: Contribution to journal › Article

Optogenetics

Proteolysis

Modulation

Proteins

Degradation

Retinoic acid signaling in ovarian folliculogenesis and steroidogenesis

Damdimopoulou, P., Chiang, C. & Flaws, J. A., Aug 2019, In : Reproductive Toxicology. 87, p. 32-41 10 p.

Research output: Contribution to journal › Article

Tretinoin

Retinoids

Ovary

Retinoic Acid Receptors

Physiology

Revealing the Thermodynamic Properties of Elementary Chemical Reactions at the Single-Molecule Level

Liu, X., Chen, T., Jain, P. K. & Xu, W., Jun 27 2019, In : Journal of Physical Chemistry B. 123, 29, p. 6253-6259 7 p.

Research output: Contribution to journal › Article

Chemical reactions

chemical reactions

Thermodynamic properties

thermodynamic properties

Molecules

Reversal shift in phonotactic learning during language production: Evidence for incremental learning

Anderson, N. D., Holmes, E. W., Dell, G. S. & Middleton, E. L., Jun 2019, In : Journal of Memory and Language. 106, p. 135-149 15 p.

Research output: Contribution to journal › Article

Language

Learning

language

learning

evidence

Reversible Bonding of Aromatic Thermosetting Copolyesters for In-Space Assembly

Meyer, J. L., Bakir, M., Lan, P., Economy, J., Jasiuk, I. M., Bonhomme, G. & Polycarpou, A. A., Apr 2019, In : Macromolecular Materials and Engineering. 304, 4, 1800647.

Research output: Contribution to journal › Article

Debonding

Adhesives

Coatings

Transesterification

Substrates

Reversible Conversion Reactions and Small First Cycle Irreversible Capacity Loss in Metal Sulfide-Based Electrodes Enabled by Solid Electrolytes

Kim, S., Choi, J., Bak, S. M., Sang, L., Li, Q., Patra, A. & Braun, P. V., Jul 4 2019, In : Advanced Functional Materials. 29, 27, 1901719.

Research output: Contribution to journal › Article

Solid electrolytes

solid electrolytes

Sulfides

sulfides

Metals

Revisiting 2π phase slip suppression in topological Josephson junctions

Rodríguez-Mota, R., Vishveshwara, S. & Pereg-Barnea, T., Jan 30 2019, In : Physical Review B. 99, 2, 024517.

Research output: Contribution to journal › Article

Josephson junctions

slip

Physics

retarding

Fermions

Reward anticipation and punishment anticipation are instantiated in the brain via opponent mechanisms

Lake, J. I., Spielberg, J. M., Infantolino, Z. P., Crocker, L. D., Yee, C. M., Heller, W. & Miller, G. A., Aug 2019, In : Psychophysiology. 56, 8, e13381.

Research output: Contribution to journal › Article

Punishment

Reward

Brain

Motivation

Cues

Rheological Analysis of the Gelation Kinetics of an Enzyme Cross-linked PEG Hydrogel

Sun Han Chang, R., Lee, J. C. W., Pedron Haba, S., Harley, B. A. & Rogers, S., Jun 10 2019, In : Biomacromolecules. 20, 6, p. 2198-2206 9 p.

Research output: Contribution to journal › Article

Enzyme kinetics

Hydrogel

Gelation

Hydrogels

Polyethylene glycols

Ring polymer dynamics and tumbling-stretch transitions in planar mixed flows

Young, C. D., Qian, J. R., Marvin, M. & Sing, C. E., Jun 10 2019, In : Physical Review E. 99, 6, 062502.

Research output: Contribution to journal › Article

Polymer Dynamics

multiphase flow

Stretch

Polymers

Ring

Robust probabilistic classification applicable to irregularly sampled functional data

Park, Y. & Simpson, D. G., Mar 2019, In : Computational Statistics and Data Analysis. 131, p. 37-49 13 p.

Research output: Contribution to journal › Article

Functional Data

Curve

Classifiers

Irregular Sampling

Bayes Classifier

Robust structured-light depth mapping via recursive decomposition of binary codes

Feng, X. & Gao, L., Jun 1 2019, In : Optical Engineering. 58, 6, 060501.

Research output: Contribution to journal › Article

binary codes

Binary codes

Cameras

Decomposition

decomposition

Room-temperature superionic-phase nanocrystals synthesized with a twinned lattice

Gong, J. & Jain, P. K., Dec 1 2019, In : Nature communications. 10, 1, 3285.

Research output: Contribution to journal › Article

Open Access

Crystal lattices

Nanoparticles

Nanocrystals

nanocrystals

Temperature

Rotation equivariant and invariant neural networks for microscopy image analysis

Chidester, B., Zhou, T., Do, M. N. & Ma, J., Jul 15 2019, In : Bioinformatics. 35, 14, p. i530-i537 btz353.

Research output: Contribution to journal › Article

Open Access

Image Analysis

Microscopy

Equivariant

Image analysis

Microscopic examination

Salt elimination reactions do not always eliminate. Mechanistic study of the reaction of NdCl ₃ with sodium N,N-dimethylaminodiboranate

Chang, N. N., Daly, S. R. & Girolami, G. S., Apr 1 2019, In : Polyhedron. 162, p. 52-58 7 p.

Research output: Contribution to journal › Article

elimination

Salts

Sodium

sodium

salts

Sanitary pads and diapers contain higher phthalate contents than those in common commercial plastic products

Park, C. J., Barakat, R., Ulanov, A., Li, Z., Lin, P. C., Chiu, K., Zhou, S., Perez, P., Lee, J., Flaws, J. & Ko, C. M. J., Mar 2019, In : Reproductive Toxicology. 84, p. 114-121 8 p.

Research output: Contribution to journal › Article

Plastic products

Volatile Organic Compounds

Plastics

Diethylhexyl Phthalate

Xylenes

Scalable 360° Video Stream Delivery: Challenges, Solutions, and Opportunities

Zink, M., Sitaraman, R. & Nahrstedt, K., Apr 2019, In : Proceedings of the IEEE. 107, 4, p. 639-650 12 p., 8643410.

Research output: Contribution to journal › Article

Video streaming

Video recording

Augmented reality

Virtual reality

Data structures

Scalable GW software for quasiparticle properties using OpenAtom

Kim, M., Mandal, S., Mikida, E., Chandrasekar, K., Bohm, E., Jain, N., Li, Q., Kanakagiri, R., Martyna, G. J., Kale, L. V. & Ismail-Beigi, S., Nov 2019, In : Computer Physics Communications. 244, p. 427-441 15 p.

Research output: Contribution to journal › Article

Electronic states

Supercomputers

computer programs

Density functional theory

electronics

Scanning electrochemical microscopy with conducting polymer probes: Validation and applications

Claudio-Cintrón, M. A. & Rodriguez Lopez, J., Sep 3 2019, In : Analytica Chimica Acta. 1069, p. 36-46 11 p.

Research output: Contribution to journal › Article

Electrochemical Scanning Microscopy

Conducting polymers

microscopy

Scanning Probe Microscopy

Microscopic examination