Research Output

2020

Accurate sex identification of ancient elephant and other animal remains using low-coverage DNA shotgun sequencing data

Flamingh, A., Coutu, A., Roca, A. L. & Malhi, R. S., Apr 1 2020, In : G3: Genes, Genomes, Genetics. 10, 4, p. 1427-1432 6 p.

Research output: Contribution to journalArticle

Open Access

Acidification in corn monocultures favor fungi, ammonia oxidizing bacteria, and nirK-denitrifier groups

Behnke, G. D., Zabaloy, M. C., Riggins, C. W., Rodríguez-Zas, S., Huang, L. & Villamil, M. B., Jun 10 2020, In : Science of the Total Environment. 720, 137514.

Research output: Contribution to journalArticle

Open Access

Adhesion to oviduct glycans regulates porcine sperm Ca2+ influx and viability

Machado, S. A., Sharif, M., Kadirvel, G., Bovin, N. & Miller, D. J., 2020, In : PloS one. 15, 8, p. e0237666

Research output: Contribution to journalArticle

Open Access

Air temperature, carbon dioxide, and ammonia assessment inside a commercial cage layer barn with manure-drying tunnels

Zheng, W., Xiong, Y., Gates, R. S., Wang, Y. & Koelkebeck, K. W., Aug 2020, In : Poultry science. 99, 8, p. 3885-3896 12 p.

Research output: Contribution to journalArticle

Open Access

Altered Hippocampal Epigenetic Regulation Underlying Reduced Cognitive Development in Response to Early Life Environmental Insults

Schachtschneider, K. M., Welge, M. E., Auvil, L., Chaki, S., Rund, L. A., Madsen, O., Elmore, M. R. P., Johnson, R. W., Groenen, M. A. M. & Schook, L. B., Feb 4 2020, In : Genes. 11, 2, 162.

Research output: Contribution to journalArticle

Open Access

Amino acids and the regulation of oxidative stress and immune function in dairy cattle

Coleman, D. N., Lopreiato, V., Alharthi, A. & Loor, J. J., Aug 18 2020, In : Journal of animal science. 98, 1, p. S175-S193

Research output: Contribution to journalArticle

Open Access

An ambient temperature collection and stabilization strategy for canine microbiota studies

Lin, C. Y., Cross, T. W. L., Doukhanine, E. & Swanson, K. S., Dec 1 2020, In : Scientific reports. 10, 1, 13383.

Research output: Contribution to journalArticle

Open Access

An improved pig reference genome sequence to enable pig genetics and genomics research

Warr, A., Affara, N., Aken, B., Beiki, H., Bickhart, D. M., Billis, K., Chow, W., Eory, L., Finlayson, H. A., Flicek, P., Girón, C. G., Griffin, D. K., Hall, R., Hannum, G., Hourlier, T., Howe, K., Hume, D. A., Izuogu, O., Kim, K., Koren, S. & 20 others, Liu, H., Manchanda, N., Martin, F. J., Nonneman, D. J., O'Connor, R. E., Phillippy, A. M., Rohrer, G. A., Rosen, B. D., Rund, L. A., Sargent, C. A., Schook, L. B., Schroeder, S. G., Schwartz, A. S., Skinner, B. M., Talbot, R., Tseng, E., Tuggle, C. K., Watson, M., Smith, T. P. L. & Archibald, A. L., Jun 1 2020, In : GigaScience. 9, 6

Research output: Contribution to journalArticle

Open Access

An interview with Dr. Francesca E. Duncan

Flaws, J. A., Feb 14 2020, In : Biology of reproduction. 102, 2, p. 261-264 4 p.

Research output: Contribution to journalComment/debate

Open Access

Apparent energy, dry matter and amino acid digestibility of differently sourced soybean meal fed to Pacific white shrimp Litopenaeus vannamei

Galkanda-Arachchige, H. S. C., Guo, J., Stein, H. H. & Allen Davis, D., Jan 1 2020, In : Aquaculture Research. 51, 1, p. 326-340 15 p.

Research output: Contribution to journalArticle

A prospective cohort analysis of gut microbial co-metabolism in Alaska Native and rural African people at high and low risk of colorectal cancer

Ocvirk, S., Wilson, A. S., Posma, J. M., Li, J. V., Koller, K. R., Day, G. M., Flanagan, C. A., Otto, J. E., Sacco, P. E., Sacco, F. D., Sapp, F. R., Wilson, A. S., Newton, K., Brouard, F., Delany, J. P., Behnning, M., Appolonia, C. N., Soni, D., Bhatti, F., Methé, B. & 7 others, Fitch, A., Morris, A., Gaskins, H. R., Kinross, J., Nicholson, J. K., Thomas, T. K. & O'Keefe, S. J. D., Feb 1 2020, In : American Journal of Clinical Nutrition. 111, 2, p. 406-419 14 p.

Research output: Contribution to journalArticle

Arginine Supply Impacts the Expression of Candidate microRNA Controlling Milk Casein Yield in Bovine Mammary Tissue

Zhang, X., Wang, Y., Wang, M., Zhou, G., Chen, L., Ding, L., Bu, D. & Loor, J., May 5 2020, In : Animals. 10, 5, 797.

Research output: Contribution to journalArticle

Open Access

Assessment of Commercial Companion Animal Kefir Products for Label Accuracy of Microbial Composition and Quantity

Metras, B. N., Holle, M. J., Parker, V. J., Miller, M. J. & Swanson, K. S., Sep 11 2020, (Accepted/In press) In : Journal of animal science. skaa301.

Research output: Contribution to journalArticle

Assessment of microbial diversity associated with CH4 emission from sugarcane vinasse storage and transportation systems

Oliveira, B. G., Mendes, L. W., Smyth, E. M., Tsai, S. M., Feigl, B. J. & Mackie, R. I., Sep 1 2020, In : Journal of Environmental Management. 269, 110748.

Research output: Contribution to journalArticle

Association of chronic wasting disease susceptibility with prion protein variation in white-tailed deer (Odocoileus virginianus)

Ishida, Y., Tian, T., Brandt, A. L., Kelly, A. C., Shelton, P., Roca, A. L., Novakofski, J. & Mateus-Pinilla, N. E., Jan 1 2020, In : Prion. 14, 1, p. 214-225 12 p.

Research output: Contribution to journalArticle

Open Access

A Staphylococcus pro-apoptotic peptide induces acute exacerbation of pulmonary fibrosis

D’alessandro-gabazza, C. N., Kobayashi, T., Yasuma, T., Toda, M., Kim, H., Fujimoto, H., Hataji, O., Takeshita, A., Nishihama, K., Okano, T., Okano, Y., Nishii, Y., Tomaru, A., Fujiwara, K., D’alessandro, V. F., Abdel-hamid, A. M., Ren, Y., Pereira, G. V., Wright, C. L., Hernandez, A. & 15 others, Fields, C. J., Yau, P. M., Wang, S., Mizoguchi, A., Fukumura, M., Ohtsuka, J., Nosaka, T., Kataoka, K., Kondoh, Y., Wu, J., Kawagishi, H., Yano, Y., Mackie, R. I., Cann, I. & Gabazza, E. C., Mar 24 2020, In : Nature Communications. 11, 1, 1539.

Research output: Contribution to journalArticle

Open Access

Body condition alters glutathione and nuclear factor erythroid 2-like 2 (NFE2L2)–related antioxidant network abundance in subcutaneous adipose tissue of periparturient Holstein cows

Liang, Y., Alharthi, A. S., Bucktrout, R., Elolimy, A. A., Lopreiato, V., Martinez-Cortés, I., Xu, C., Fernandez, C., Trevisi, E. & Loor, J. J., Jul 2020, In : Journal of Dairy Science. 103, 7, p. 6439-6453 15 p.

Research output: Contribution to journalArticle

Open Access

Catalytic Microgelators for Decoupled Control of Gelation Rate and Rigidity of the Biological Gels

Hong, Y. T., Bregante, D. T., Lee, J. C. W., Seo, Y., Kim, D. H., Lee, Y. J., Schook, L. B., Jeon, H., Sung, H. J., Flaherty, D. W., Rogers, S. A. & Kong, H., Jan 10 2020, In : Journal of Controlled Release. 317, p. 166-180 15 p.

Research output: Contribution to journalArticle

Open Access
Open Access

Circ09863 Regulates Unsaturated Fatty Acid Metabolism by Adsorbing miR-27a-3p in Bovine Mammary Epithelial Cells

Chen, Z., Zhou, J., Wang, M., Liu, J., Zhang, L., Loor, J. J., Liang, Y., Wu, H. & Yang, Z., Aug 12 2020, In : Journal of Agricultural and Food Chemistry. 68, 32, p. 8589-8601 13 p.

Research output: Contribution to journalArticle

Citrobacter species increase energy harvest by modulating intestinal microbiota in fish: Nondominant species play important functions

Zhang, M. L., Li, M., Sheng, Y., Tan, F., Chen, L., Cann, I., Cann, I., Cann, I., Cann, I. & Du, Z. Y., Jun 2020, In : mSystems. 5, 3, e00303-20.

Research output: Contribution to journalArticle

Open Access

Co-expression networks uncover regulation of splicing and transcription markers of disease

Zhang, P., Southey, B. R. & Rodriguez-Zas, S. L., Mar 11 2020, In : EPiC Series in Computing. 70, p. 119-128 10 p.

Research output: Contribution to journalConference article

Open Access

Concentration of digestible and metabolizable energy in L-threonine and L-valine biomass products fed to weanling pigs

Oliveira, M. S. F., Espinosa, C. D., Berrocoso, J. D., Rojas, O. J., Htoo, J. K. & Stein, H. H., May 2020, In : Animal Feed Science and Technology. 263, 114463.

Research output: Contribution to journalArticle

Concentrations of digestible and metabolizable energy and amino acid digestibility by growing pigs may be reduced by autoclaving soybean meal

Oliveira, M. S. F., Wiltafsky, M. K., Lee, S. A., Kwon, W. B. & Stein, H. H., Nov 2020, In : Animal Feed Science and Technology. 269, 114621.

Research output: Contribution to journalArticle

Cyanidin-3-O-glucoside improves non-alcoholic fatty liver disease by promoting PINK1-mediated mitophagy in mice

Li, X., Shi, Z., Zhu, Y., Shen, T., Wang, H., Shui, G., Loor, J. J., Fang, Z., Chen, M., Wang, X., Peng, Z., Song, Y., Wang, Z., Du, X. & Liu, G., Aug 1 2020, In : British Journal of Pharmacology. 177, 15, p. 3591-3607 17 p.

Research output: Contribution to journalArticle

Determination of the trace minerals requirements for maintenance and growth of 35–50 kg Dorper × Hu crossbred ram lambs

Zhang, H., Zhang, Y., Peng, A., Nie, H., Wang, F., Elsabagh, M., Loor, J. J. & Amini, N. C., Dec 14 2020, In : Italian Journal of Animal Science. 19, 1, p. 203-212 10 p.

Research output: Contribution to journalArticle

Open Access

Development and comprehensive characterization of porcine hepatocellular carcinoma for translational liver cancer investigation

Gaba, R. C., Elkhadragy, L., Edward Boas, F., Chaki, S., Chen, H. H., El-Kebir, M., Garcia, K. D., Giurini, E. F., Guzman, G., LoBianco, F. V., Neto, M. F., Newson, J. L., Qazi, A., Regan, M., Rund, L. A., Schwind, R. M., Stewart, M. C., Thomas, F. M., Whiteley, H. E., Wu, J. & 2 others, Schook, L. B. & Schachtschneider, K. M., Jul 14 2020, In : Oncotarget. 11, 28, p. 2686-2701 16 p.

Research output: Contribution to journalArticle

Open Access

Development of a dynamic energy-partitioning model for enteric methane emissions and milk production in goats using energy balance data from indirect calorimetry studies

Fernández, C., Hernando, I., Moreno-Latorre, E. & Loor, J. J., 2020, (Accepted/In press) In : Animal.

Research output: Contribution to journalArticle

Dietary methylsulfonylmethane supplementation and oxidative stress in broiler chickens

Rasheed, M. S. A., Oelschlager, M. L., Smith, B. N., Bauer, L. L., Whelan, R. A. & Dilger, R. N., Feb 2020, In : Poultry science. 99, 2, p. 914-925 12 p.

Research output: Contribution to journalArticle

Open Access

Dietary Oligofructose Alone or in Combination with 2′-Fucosyllactose Differentially Improves Recognition Memory and Hippocampal mRNA Expression

Fleming, S. A., Mudd, A. T., Hauser, J., Yan, J., Metairon, S., Steiner, P., Donovan, S. M. & Dilger, R. N., 2020, In : Nutrients. 12, 7, 2131.

Research output: Contribution to journalArticle

Open Access

Dietary pectin at 0.2% in milk replacer did not inhibit growth, feed intake, or nutrient digestibility in a 3-week neonatal pig study

Fleming, S. A., Richards, J. D., Bradley, C. L., Pan, X., Li, Q. & Dilger, R. N., Jul 2020, In : Regulatory Toxicology and Pharmacology. 114, 104669.

Research output: Contribution to journalArticle

Open Access

Dietary soy isoflavones reduce pathogen-related mortality in growing pigs under porcine reproductive and respiratory syndrome viral challenge

Smith, B. N., Oelschlager, M. L., Abdul Rasheed, M. S. & Dilger, R. N., Jan 24 2020, In : Journal of animal science. 98, 2, skaa024.

Research output: Contribution to journalArticle

Diet Composition Affects Liver and Mammary Tissue Transcriptome in Primiparous Holstein Dairy Cows

Gao, S., Zhou, Z., Wang, J., Loor, J., Bionaz, M., Ma, L. & Bu, D., Jul 14 2020, In : Animals. 10, 7, 1191.

Research output: Contribution to journalArticle

Open Access

Digestible and metabolizable energy in soybean meal sourced from different countries and fed to pigs

Lopez, D. A., Lagos, L. V. & Stein, H. H., Oct 2020, In : Animal Feed Science and Technology. 268, 114600.

Research output: Contribution to journalArticle

Early-Life Supplementation of Bovine Milk Osteopontin Supports Neurodevelopment and Influences Exploratory Behavior

Joung, S., Fil, J. E., Heckmann, A. B., Kvistgaard, A. S. & Dilger, R. N., Jul 24 2020, In : Nutrients. 12, 8, 2206.

Research output: Contribution to journalArticle

Open Access

Effect of fructans, prebiotics and fibres on the human gut microbiome assessed by 16S rRNA-based approaches: A review

Swanson, K. S., de Vos, W. M., Martens, E. C., Gilbert, J. A., Menon, R. S., Soto-Vaca, A., Hautvast, J., Meyer, P. D., Borewicz, K., Vaughan, E. E. & Slavin, J. L., 2020, In : Beneficial Microbes. 11, 2, p. 101-129 29 p.

Research output: Contribution to journalReview article

Effect of porcine reproductive and respiratory syndrome virus infection and soy isoflavone supplementation on carcass cutability and meat quality of pigs

Bryan, E. E., Smith, B. N., Honegger, L. T., Boler, D. D., Dilger, R. N. & Dilger, A. C., Apr 6 2020, In : Journal of animal science. 98, 4, skaa080.

Research output: Contribution to journalArticle

Effect of soybean oil and fish oil on lipid-related transcripts in subcutaneous adipose tissue of dairy cows

Vargas-Bello-Pérez, E., Bionaz, M., Garrido-Sartore, M., Cancino-Padilla, N., Morales, M. S., Romero, J., Leskinen, H., Garnsworthy, P. C. & Loor, J. J., Jan 2020, In : Animals. 10, 1, 54.

Research output: Contribution to journalArticle

Open Access

Effects of copper hydroxychloride and dietary fiber on intestinal permeability, growth performance, and blood characteristics of nursery pigs

Espinosa, C. D., Fry, R. S., Kocher, M. E. & Stein, H. H., May 2020, In : Animal Feed Science and Technology. 263, 114447.

Research output: Contribution to journalArticle

Effects of copper hydroxychloride on growth performance and abundance of genes involved in lipid metabolism of growing pigs

Espinosa, C. D., Fry, R. S., Kocher, M. E. & Stein, H. H., Jan 1 2020, In : Journal of animal science. 98, 1

Research output: Contribution to journalArticle

Effects of dietary vegetable oils on mammary lipid-related genes in holstein dairy cows

Vargas-Bello-pérez, E., Geldsetzer-Mendoza, C., Cancino-Padilla, N., Morales, M. S., Leskinen, H., Garnsworthy, P. C., Loor, J. J. & Romero, J., Jan 2020, In : Animals. 10, 1, 57.

Research output: Contribution to journalArticle

Open Access

Effects of different carbohydrate sources on taurine status in healthy Beagle dogs

Pezzali, J. G., Acuff, H. L., Henry, W., Alexander, C., Swanson, K. S. & Aldrich, C. G., Jan 24 2020, In : Journal of animal science. 98, 2, skaa010.

Research output: Contribution to journalArticle

Open Access

Effects of far-off and close-up transition cow feeding on uterine health, postpartum anestrous interval, and reproductive outcomes in pasture-based dairy cows

Meier, S., Kay, J. K., Kuhn-Sherlock, B., Heiser, A., Mitchell, M. D., Crookenden, M. A., Riboni, M. V., Loor, J. J. & Roche, J. R., Feb 6 2020, In : Journal of Animal Science and Biotechnology. 11, 1, 17.

Research output: Contribution to journalArticle

Open Access