Research Output per year
This set of scripts accompanies the manuscript describing the R package polyRAD, which uses DNA sequence read depth to estimate allele dosage in diploids and polyploids. Using several high-confidence SNP datasets from various species, allelic read depth from a typical RAD-seq dataset was simulated, then genotypes were estimated with polyRAD and other software and compared to the true genotypes, yielding error estimates.
|Date made available||Nov 21 2018|
|Publisher||University of Illinois at Urbana-Champaign|
- R programming language
- Bayesian genotype calling
- restriction site-associated DNA sequencing (RAD-seq)
- genotyping-by-sequencing (GBS)
- single nucleotide polymorphism (SNP)
Lipka, A. E. & Sacks, E. J., Mar 1 2019, In : G3: Genes, Genomes, Genetics. 9, 3, p. 663-673 11 p.
Research output: Contribution to journal › Article
Clark, L. V. (Creator), Lipka, A. E. (Creator), Sacks, E. J. (Creator) (Nov 21 2018). Scripts for testing the error rate of polyRAD. University of Illinois at Urbana-Champaign. 10.13012/B2IDB-9729830_V2