RAD-seq genotypes for a Miscanthus sacchariflorus diversity panel

  • Lindsay Clark (Creator)
  • Joyce Njuguna (Creator)
  • Xiaoli Jin (Creator)
  • Karen Petersen (Creator)
  • Kossanou G. Anzoua (Creator)
  • Larissa Bagmet (Creator)
  • Pavel Chebukin (Creator)
  • Martin Deuter (Creator)
  • Elena Dzyubenko (Creator)
  • Nicolay Dzyubenko (Creator)
  • Kweon Heo (Creator)
  • Douglas A. Johnson (Creator)
  • Uffe Jørgensen (Creator)
  • Jens B. Kjeldsen (Creator)
  • Hironori Nagano (Creator)
  • Junhua Peng (Creator)
  • Andrey Sabitov (Creator)
  • Toshihiko Yamada (Creator)
  • Ji Hye Yoo (Creator)
  • Chang Yeon Yu (Creator)
  • Stephen P Long (Creator)
  • Erik J Sacks (Creator)

Dataset

Description

Restriction site-associated DNA sequencing (RAD-seq) data from 643 Miscanthus accessions from a diversity panel, including 613 Miscanthus sacchariflorus, three M. sinensis, and 27 M. xgiganteus. DNA was digested with PstI and MspI, and single-end Illumina sequencing was performed adjacent to the PstI site. Variant and genotype calling was performed with TASSEL-GBSv2, using the Miscanthus sinensis v7.1 reference genome from Phytozome 12 (https://phytozome.jgi.doe.gov). Additional ploidy-aware genotype calling was performed by polyRAD v1.1.
Date made availableSep 18 2020
PublisherUniversity of Illinois at Urbana-Champaign

Keywords

  • genetic diversity
  • variant call format (VCF)
  • biomass
  • grass
  • genotyping-by-sequencing (GBS)
  • single nucleotide polymorphism (SNP)

Cite this

Clark, L. (Creator), Njuguna, J. (Creator), Jin, X. (Creator), Petersen, K. (Creator), Anzoua, K. G. (Creator), Bagmet, L. (Creator), Chebukin, P. (Creator), Deuter, M. (Creator), Dzyubenko, E. (Creator), Dzyubenko, N. (Creator), Heo, K. (Creator), Johnson, D. A. (Creator), Jørgensen, U. (Creator), Kjeldsen, J. B. (Creator), Nagano, H. (Creator), Peng, J. (Creator), Sabitov, A. (Creator), Yamada, T. (Creator), Yoo, J. H. (Creator), Yu, C. Y. (Creator), Long, S. P. (Creator), Sacks, E. J. (Creator) (Sep 18 2020). RAD-seq genotypes for a Miscanthus sacchariflorus diversity panel. University of Illinois at Urbana-Champaign. 10.13012/B2IDB-8170405_V1