RAD-seq genotypes for a Miscanthus sacchariflorus diversity panel

  • Lindsay Clark (Creator)
  • Joyce Njuguna (Creator)
  • Xiaoli Jin (Creator)
  • Karen Petersen (Creator)
  • Kossanou G. Anzoua (Creator)
  • Larissa Bagmet (Creator)
  • Pavel Chebukin (Creator)
  • Martin Deuter (Creator)
  • Elena Dzyubenko (Creator)
  • Nicolay Dzyubenko (Creator)
  • Kweon Heo (Creator)
  • Douglas A. Johnson (Creator)
  • Uffe Jørgensen (Creator)
  • Jens B. Kjeldsen (Creator)
  • Hironori Nagano (Creator)
  • Junhua Peng (Creator)
  • Andrey Sabitov (Creator)
  • Toshihiko Yamada (Creator)
  • Ji Hye Yoo (Creator)
  • Chang Yeon Yu (Creator)
  • Stephen P Long (Creator)
  • Erik J Sacks (Creator)

Dataset

Description

Restriction site-associated DNA sequencing (RAD-seq) data from 643 Miscanthus accessions from a diversity panel, including 613 Miscanthus sacchariflorus, three M. sinensis, and 27 M. xgiganteus. DNA was digested with PstI and MspI, and single-end Illumina sequencing was performed adjacent to the PstI site. Variant and genotype calling was performed with TASSEL-GBSv2, using the Miscanthus sinensis v7.1 reference genome from Phytozome 12 (https://phytozome.jgi.doe.gov). Additional ploidy-aware genotype calling was performed by polyRAD v1.1.
Date made availableSep 18 2020
PublisherUniversity of Illinois at Urbana-Champaign

Keywords

  • genetic diversity
  • variant call format (VCF)
  • biomass
  • grass
  • genotyping-by-sequencing (GBS)
  • single nucleotide polymorphism (SNP)

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