NJMerge: A generic technique for scaling phylogeny estimation methods and its application to species trees

Dataset

Description

This repository includes scripts, datasets, and supplementary materials for the study, "NJMerge: A generic technique for scaling phylogeny estimation methods and its application to species trees", presented at RECOMB-CG 2018. The supplementary figures and tables referenced in the main paper can be found in njmerge-supplementary-materials.pdf. The latest version of NJMerge can be downloaded from Github: https://github.com/ekmolloy/njmerge. When downloading datasets, please note that there is an error in the README; the file names on lines 37/38 should be switched so that the README reads:
+ fasttree-exon.tre contains lines 1-25, 1-100, or 1-1000 of fasttree-total.tre
+ fasttree-intron.tre contains lines 26-50, 101-200, or 1001-2000 of fasttree-total.tre
Date made availableJul 29 2018
PublisherUniversity of Illinois at Urbana-Champaign

Keywords

  • phylogenomics
  • species trees
  • incomplete lineage sorting
  • divide-and-conquer

Cite this

Molloy, E. K. (Creator), Warnow, T. (Creator). (Jul 29 2018). NJMerge: A generic technique for scaling phylogeny estimation methods and its application to species trees. University of Illinois at Urbana-Champaign. 10.13012/B2IDB-1424746_V1