Miscanthus sinensis multi-location trial: phenotypic analysis, genome-wide association, and genomic prediction

  • Lindsay V. Clark (Creator)
  • Maria Stefanie Dwiyanti (Creator)
  • Kossonou G. Anzoua (Creator)
  • Joe E. Brummer (Creator)
  • Bimal Kumar Ghimire (Creator)
  • Katarzyna Głowacka (Creator)
  • Megan Hall (Creator)
  • Kweon Heo (Creator)
  • Xiaoli Jin (Creator)
  • Alexander Edward Lipka (Creator)
  • Junhua Peng (Creator)
  • Toshihiko Yamada (Creator)
  • Ji Hye Yoo (Creator)
  • Chang Yeon Yu (Creator)
  • Hua Zhao (Creator)
  • Stephen P Long (Creator)
  • Erik J Sacks (Creator)

Dataset

Description

This dataset contains genotypic and phenotypic data, R scripts, and the results of analysis pertaining to a multi-location field trial of Miscanthus sinensis. Genome-wide association and genomic prediction were performed for biomass yield and 14 yield-component traits across six field trial locations in Asia and North America, using 46,177 single-nucleotide polymorphism (SNP) markers mined from restriction site-associated DNA sequencing (RAD-seq) and 568 M. sinensis accessions. Genomic regions and candidate genes were identified that can be used for breeding improved varieties of M. sinensis, which in turn will be used to generate new M. xgiganteus clones for biomass.
Date made availableMar 25 2019
PublisherUniversity of Illinois at Urbana-Champaign

Keywords

  • genome-wide association studies (GWAS)
  • genomic selection
  • miscanthus
  • genotyping-by-sequencing (GBS)

Research Output

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1125-1145 21 p.

Research output: Contribution to journalArticle

Open Access
  • Genome-wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America

    Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 988-1007 20 p.

    Research output: Contribution to journalArticle

    Open Access
  • Cite this

    Clark, L. V. (Creator), Dwiyanti, M. S. (Creator), Anzoua, K. G. (Creator), Brummer, J. E. (Creator), Ghimire, B. K. (Creator), Głowacka, K. (Creator), Hall, M. (Creator), Heo, K. (Creator), Jin, X. (Creator), Lipka, A. E. (Creator), Peng, J. (Creator), Yamada, T. (Creator), Yoo, J. H. (Creator), Yu, C. Y. (Creator), Zhao, H. (Creator), Long, S. P. (Creator), Sacks, E. J. (Creator) (Mar 25 2019). Miscanthus sinensis multi-location trial: phenotypic analysis, genome-wide association, and genomic prediction . University of Illinois at Urbana-Champaign. 10.13012/B2IDB-0790815_V3