Diversity - PubMed Dataset

Dataset

Description

Diversity - PubMed dataset
Contact: Apratim Mishra (Oct, 2024)

This dataset presents article-level (pmid) and author-level (auid) diversity data for PubMed articles. The chosen selection includes articles retrieved from Authority 2018 [1], 907 024 papers, and 1 316 838 authors, and is an expanded dataset of V1. The sample of articles consists of the top 40 journals in the dataset, limited to 2-12 authors published between 1991 – 2014, which are article type "journal type" written in English. Files are 'gzip' compressed and separated by tab space, and V3 includes the correct author count for the included papers (pmids) and updated results with no NaNs.
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File1: auids_plos_3.csv.gz (Important columns defined, 5 in total)
• AUID: a unique ID for each author
• Genni: gender prediction
• Ethnea: ethnicity prediction
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File2: pmids_plos_3.csv.gz (Important columns defined)
• pmid: unique paper
• auid: all unique auids (author-name unique identification)
• year: Year of paper publication
• no_authors: Author count
• journal: Journal name
• years: first year of publication for every author
• Country-temporal: Country of affiliation for every author
• h_index: Journal h-index
• TimeNovelty: Paper Time novelty [2]
• nih_funded: Binary variable indicating funding for any author
• prior_cit_mean: Mean of all authors’ prior citation rate
• Insti_impact: All unique institutions’ citation rate
• mesh_vals: Top MeSH values for every author of that paper
• relative_citation_ratio: RCR

The ‘Readme’ includes a description for all columns.
[1] Torvik, Vetle; Smalheiser, Neil (2021): Author-ity 2018 - PubMed author name disambiguated dataset. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-2273402_V1
[2] Mishra, Shubhanshu; Torvik, Vetle I. (2018): Conceptual novelty scores for PubMed articles. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5060298_V1
Date made availableOct 10 2024
PublisherUniversity of Illinois Urbana-Champaign

Keywords

  • Diversity
  • PubMed
  • Citation

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