Datasets for "Analyses of expanded anchored-hybrid phylogenomic datasets support revisions to the higher classification of leafhoppers (Hemiptera: Cicadellidae)"

The following 5 files were used to reconstruct the phylogeny of the Membracoidea.

1. Taxon_sampling.csv: contains the sample IDs (1st column, used in the alignments) and the taxonomic information (2nd to 6th columns) for 269 samples.

2. concatenated_aa_.phy: a concatenated amino acid dataset with 52,987 amino acid positions. This dataset was used for the maximum likelihood analysis by IQ-TREE v1.6.12. Hyphens are used to represent gaps.

3. concatenated_nt.phy: a concatenated nucleotide dataset with all codon positions included (158,961 nucleotide positions). This dataset was used for the maximum likelihood analysis by IQ-TREE v1.6.12. Hyphens are used to represent gaps.

4. concatenated_12nt.phy: a concatenated nucleotide dataset with the third codon positions excluded (105,974 nucleotide positions). This dataset was used for the maximum likelihood analysis by IQ-TREE v1.6.12. Hyphens are used to represent gaps.

5. Individual_gene_alignment.zip: contains 427 FASTA files, each one represents the nucleotide alignment for a gene. Hyphens are used to represent gaps. These files were used to construct gene trees using IQ-TREE v1.6.12, followed by multispecies coalescent analysis using ASTRAL v 4.10.5.