Data from: host and parasite morphology influence congruence between host and parasite phylogenies

  • Andrew Sweet (Creator)
  • Sarah Bush (Creator)
  • Daniel Gustafsson (Creator)
  • Julie Allen (Creator)
  • Emily DiBlasi (Creator)
  • Heather Skeen (Creator)
  • Jason Weckstein (Creator)
  • Kevin Paul Johnson (Creator)

Dataset

Description

Concatenated sequence alignment, phylogenetic analysis files, and relevant software parameter files from a cophylogenetic study of Brueelia-complex lice and their avian hosts. The sequence alignment file includes a list of character blocks for each gene alignment and the parameters used for the MrBayes phylogenetic analysis.

1) Files from the MrBayes analyses:
a) a file with 100 random post-burnin trees (50% burnin) used in the cophylogenetic analysis - analysisrandom100_trees_brueelia.tre
b) a majority rule consensus tree - treeconsensus_tree_brueelia.tre
c) a maximum clade credibility tree - mcc_tree_brueelia.tre
The tree tips are labeled with louse voucher names, and can be referenced in Supplementary Table 1 of the associated publication.

2) Files related to a BEAST analysis with COI data:
a) the XML file used as input for the BEAST run, including model parameters, MCMC chain length, and priors - beast_parameters_coi_brueelia.xml
b) a file with 100 random post-burnin trees (10% burnin) from the BEAST posterior distribution of trees; used in OTU analysis - beast_100random_trees_brueelia.tre
c) an ultrametric maximum clade credibility tree - mcc_tree_beast_brueelia.tre

3) A maximum clade credibility tree of Brueelia-complex host species generated from a distribution of trees downloaded from https://birdtree.org/subsets/ - mcc_tree_brueelia_hosts.tre

4) Concatenated sequence alignment - concatenated_alignment_brueelia.nex
Date made availableJan 3 2018
PublisherUniversity of Illinois at Urbana-Champaign

Keywords

  • multiple sequence alignment
  • phylogenetic tree
  • Bayesian phylogenetic analysis
  • BEAST
  • passerines
  • Brueelia-complex
  • MrBayes
  • bird lice

Cite this

Sweet, A. (Creator), Bush, S. (Creator), Gustafsson, D. (Creator), Allen, J. (Creator), DiBlasi, E. (Creator), Skeen, H. (Creator), Weckstein, J. (Creator), Johnson, K. P. (Creator) (Jan 3 2018). Data from: host and parasite morphology influence congruence between host and parasite phylogenies. University of Illinois at Urbana-Champaign. 10.13012/B2IDB-2011663_V1