Data for changes in neuropeptide prohormone genes among Cetartio-dactyla livestock and wild species associated with evolution and domestication

Dataset

Description

This dataset contain information for the paper "Changes in neuropeptide prohormone genes among Cetartio-dactyla livestock and wild species associated with evolution and domestication" Veterinary Sciences, MDPI. Protein sequences were predicted using GeneWise for 98 neuropeptide prohormone genes from publicly available genomes of 118 Cetartiodactyla species. All predictions (CetartiodactylaSequences2022.zip) were manually verified. Sequences were aligned within each prohormone using MAFFT (MDPImultalign2022.zip includes multiple sequence alignment of all species available for each prohormone). Phylogenetic gene trees were constructed using PhyML and the species tree was constructed using ASTRAL (MDPItree2022.zip). The data is released under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0).
Date made availableJun 1 2022
PublisherUniversity of Illinois at Urbana-Champaign

Keywords

  • neuropeptide
  • prohormone
  • gene tree
  • Cetartiodactyla
  • species tree
  • phylogenetics

Cite this