Multiple sequence alignments from concatenated nuclear and mitochondrial genes and resulting phylogenetic tree files of fruit doves and their close relatives. Files include: BEAST input XML file (fruit_dove_beast_input.xml); a maximum clade credibility tree from a BEAST analysis (fruit_dove_beast_mcc.tre); concatenated multiple sequence alignment NEXUS files for the novel dataset (fruit_dove_concatenated_alignment.nex, 76 taxa, 4,277 characters) and the dataset with additional sequences (fruit_dove_plus_cibois_data_concatenated_alignment.nex, 204 taxa, 4,277 characters), both of which contain a MrBayes block including partition information; and 50% majority-rule consensus trees generated from MrBayes analyses, using the NEXUS alignment files as inputs (fruit_dove_mrbayes_consensus.tre, fruit_dove_plus_cibois_data_mrbayes_consensus.tre).
|Date made available||Aug 13 2019|
|Publisher||University of Illinois at Urbana-Champaign|
- fruit doves
- Aves: Columbidae
- multiple sequence alignment
Nowak, J. E. (Creator), Sweet, A. D. (Creator), Weckstein, J. D. (Creator), Johnson, K. P. (Creator) (Aug 13 2019). Data for: A molecular phylogenetic analysis of the genera of fruit doves and their allies using dense taxonomic sampling. University of Illinois at Urbana-Champaign. 10.13012/B2IDB-9797270_V1