Description

Thank you for using these datasets!

These files contain trees and reference alignments, as well as the selected query sequences for testing phylogenetic placement methods against and within the SCAMPP framework.

There are four datasets from three different sources, each containing their source alignment and "true" tree, any estimated trees that may have been generated, and any re-estimated branch lengths that were created to be used with their requisite phylogenetic placement method.

Three biological datasets (16S.B.ALL, PEWO/LTP_s128_SSU, and PEWO/green85) and one simulated dataset (nt78) is contained. See README.txt in each file for more information.
Date made availableApr 29 2022
PublisherUniversity of Illinois at Urbana-Champaign

Keywords

  • Phylogenetic Placement
  • EPA-ng
  • pplacer
  • Maximum Likelihood
  • Phylogenetics

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