AllanLab fluidigm pipeline test dataset



The Allan Lab has published a Fluidigm pipeline online. This is the url:
This url includes a tutorial for running the pipeline. However it does not have test datasets yet.
This tarball hosted at the Illinois Data Bank is the dataset that completes the github tutorial.
It includes inputs (custom database of tick pathogens and fluidigm raw reads) and output files (tables of samples with taxonomic classifications).
Date made availableAug 25 2020
PublisherUniversity of Illinois Urbana-Champaign


  • fluidigm pipeline
  • fluidigm paired reads
  • custom database of tick pathogens
  • fluidigm tutorial

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